Wall clock time and date at job start Tue Mar 31 2020 01:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39868 * 125.43493 * 2 1 4 4 C 1.30281 * 110.00950 * 180.02562 * 3 2 1 5 5 C 1.45977 * 107.70601 * 0.02562 * 4 3 2 6 6 C 1.40075 * 133.83787 * 180.02562 * 5 4 3 7 7 C 1.37692 * 120.00200 * 179.97438 * 6 5 4 8 8 C 1.38529 * 120.68437 * 359.97438 * 7 6 5 9 9 C 1.39257 * 120.47822 * 0.02562 * 8 7 6 10 10 C 1.47584 * 120.22137 * 180.02562 * 9 8 7 11 11 C 1.39473 * 120.79861 * 64.72155 * 10 9 8 12 12 N 1.31613 * 120.63564 * 179.70544 * 11 10 9 13 13 C 1.32265 * 122.52256 * 0.59077 * 12 11 10 14 14 C 1.36405 * 121.55098 * 359.70050 * 13 12 11 15 15 C 1.41162 * 119.11814 * 359.97438 * 14 13 12 16 16 C 1.40811 * 121.11654 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00545 * 156.36734 * 16 15 14 18 18 C 1.40151 * 119.99911 * 336.36294 * 16 15 14 19 19 N 1.30700 * 120.00312 * 342.83421 * 18 16 15 20 20 Si 1.86807 * 119.99852 * 162.83292 * 18 16 15 21 21 H 1.48495 * 109.46943 * 90.00300 * 20 18 16 22 22 H 1.48503 * 109.46759 * 210.00397 * 20 18 16 23 23 H 1.48507 * 109.47027 * 330.00064 * 20 18 16 24 24 C 1.36657 * 125.43470 * 180.32340 * 2 1 3 25 25 H 1.09005 * 109.46816 * 89.97202 * 1 2 3 26 26 H 1.09001 * 109.47260 * 209.96926 * 1 2 3 27 27 H 1.09000 * 109.47055 * 329.97078 * 1 2 3 28 28 H 1.07994 * 126.14559 * 179.97438 * 4 3 2 29 29 H 1.07997 * 119.99935 * 0.02562 * 6 5 4 30 30 H 1.08002 * 119.66148 * 180.02562 * 7 6 5 31 31 H 1.07996 * 119.76277 * 180.02562 * 8 7 6 32 32 H 1.07995 * 119.68028 * 359.96948 * 11 10 9 33 33 H 1.08008 * 119.22379 * 179.72078 * 13 12 11 34 34 H 1.07999 * 120.44296 * 180.02562 * 14 13 12 35 35 H 0.96993 * 120.00144 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2759 1.1396 0.0000 4 6 3.5318 0.7931 -0.0005 5 6 3.5899 -0.6655 -0.0016 6 6 4.6381 -1.5947 -0.0020 7 6 4.3622 -2.9438 -0.0025 8 6 3.0534 -3.3977 -0.0020 9 6 1.9928 -2.4953 -0.0016 10 6 0.6007 -2.9852 -0.0005 11 6 0.0976 -3.7045 1.0834 12 7 -1.1462 -4.1349 1.0835 13 6 -1.9714 -3.9248 0.0714 14 6 -1.5782 -3.2376 -1.0394 15 6 -0.2591 -2.7396 -1.1078 16 6 0.1910 -2.0242 -2.2340 17 1 1.0207 -1.3389 -2.1424 18 6 -0.4376 -2.2014 -3.4740 19 7 -1.1976 -3.2450 -3.6783 20 14 -0.1893 -0.9461 -4.8350 21 1 0.9865 -1.3320 -5.6557 22 1 -1.3997 -0.9017 -5.6942 23 1 0.0425 0.3932 -4.2368 24 6 2.2573 -1.1134 -0.0063 25 1 -0.3633 0.0005 -1.0277 26 1 -0.3634 -0.8903 0.5134 27 1 -0.3633 0.8897 0.5143 28 1 4.3778 1.4643 -0.0011 29 1 5.6626 -1.2531 -0.0011 30 1 5.1747 -3.6554 -0.0024 31 1 2.8542 -4.4591 -0.0020 32 1 0.7335 -3.9065 1.9326 33 1 -2.9805 -4.3060 0.1260 34 1 -2.2671 -3.0761 -1.8553 35 1 -1.6330 -3.3674 -4.5363 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241457927.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:36 Heat of formation + Delta-G solvation = 99.023924 kcal Electronic energy + Delta-G solvation = -21451.918434 eV Core-core repulsion = 18415.051190 eV Total energy + Delta-G solvation = -3036.867244 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.13117 -40.16896 -37.81774 -36.17473 -34.74328 -32.62241 -32.08274 -30.64969 -30.00471 -27.88438 -27.09486 -24.46138 -23.50565 -22.75955 -22.61244 -20.94004 -19.53719 -17.81970 -17.75068 -17.38602 -16.49185 -16.30687 -16.13442 -15.94674 -15.47463 -15.03337 -14.69499 -14.44493 -14.12747 -14.00884 -13.82077 -13.42678 -13.23752 -13.14818 -12.90458 -12.64782 -12.36410 -12.26107 -12.06149 -11.75650 -11.51075 -11.28888 -10.78999 -9.95133 -9.87415 -9.62565 -9.37229 -8.80189 -8.43323 -6.56450 0.08312 0.69749 0.87656 0.95253 1.28908 1.38649 1.46586 1.61086 1.70045 2.07360 2.68434 2.99842 3.61434 3.67498 3.82388 3.93644 4.06284 4.27236 4.37093 4.42238 4.49113 4.52806 4.60895 4.78532 4.89530 4.95217 4.99454 5.09436 5.17808 5.22215 5.41734 5.52422 5.62502 5.71455 5.79315 5.89626 6.09693 6.15562 6.23716 6.48502 6.73902 6.77967 6.82879 7.71028 8.12359 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013353 B = 0.009223 C = 0.007079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.383229 B = 3035.210097 C = 3954.230733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.407 5.407 3 N -0.290 5.290 4 C 0.075 3.925 5 C -0.204 4.204 6 C -0.050 4.050 7 C -0.155 4.155 8 C -0.088 4.088 9 C -0.031 4.031 10 C -0.233 4.233 11 C 0.118 3.882 12 N -0.588 5.588 13 C 0.079 3.921 14 C -0.231 4.231 15 C 0.132 3.868 16 C -0.453 4.453 17 H 0.073 0.927 18 C 0.048 3.952 19 N -0.798 5.798 20 Si 0.963 3.037 21 H -0.264 1.264 22 H -0.257 1.257 23 H -0.267 1.267 24 C 0.120 3.880 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.238 0.762 29 H 0.163 0.837 30 H 0.156 0.844 31 H 0.123 0.877 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.116 0.884 35 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.605 4.539 1.957 9.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.195 5.195 3 N -0.103 5.103 4 C -0.122 4.122 5 C -0.212 4.212 6 C -0.070 4.070 7 C -0.175 4.175 8 C -0.109 4.109 9 C -0.036 4.036 10 C -0.238 4.238 11 C -0.039 4.039 12 N -0.303 5.303 13 C -0.069 4.069 14 C -0.254 4.254 15 C 0.124 3.876 16 C -0.483 4.483 17 H 0.091 0.909 18 C -0.171 4.171 19 N -0.422 5.422 20 Si 0.784 3.216 21 H -0.189 1.189 22 H -0.181 1.181 23 H -0.191 1.191 24 C 0.005 3.995 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.254 0.746 29 H 0.181 0.819 30 H 0.173 0.827 31 H 0.141 0.859 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.134 0.866 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.040 4.932 2.507 8.954 hybrid contribution 0.186 -0.036 -1.545 1.556 sum 7.227 4.896 0.962 8.782 Atomic orbital electron populations 1.21825 0.74398 1.02917 1.03191 1.47993 1.06002 1.01209 1.64265 1.76443 1.03750 1.09954 1.20145 1.25710 0.94907 0.93069 0.98498 1.20279 0.92739 0.94400 1.13817 1.20918 0.98334 0.91306 0.96486 1.21093 0.95920 0.96074 1.04364 1.21311 0.92222 0.98741 0.98638 1.17751 0.93095 0.88724 1.03996 1.19672 0.93901 1.10866 0.99370 1.22452 0.91842 0.93610 0.95982 1.67378 1.05314 1.27838 1.29780 1.22018 0.98562 0.96414 0.89935 1.21896 0.97275 1.06586 0.99627 1.17918 0.90346 0.88036 0.91272 1.19579 1.14361 1.21414 0.92965 0.90930 1.26632 0.92559 0.96172 1.01770 1.69769 1.22365 1.24119 1.25968 0.85471 0.79452 0.78970 0.77694 1.18855 1.18114 1.19083 1.19135 0.91419 0.89158 0.99816 0.91456 0.91169 0.89474 0.74587 0.81917 0.82679 0.85864 0.84340 0.84342 0.86596 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.73 9.29 127.77 1.19 5.92 16 2 N -0.41 -16.62 3.74 -360.30 -1.35 -17.97 16 3 N -0.29 -10.59 12.41 -53.04 -0.66 -11.24 16 4 C 0.07 2.20 12.29 86.93 1.07 3.26 16 5 C -0.20 -6.82 6.36 -20.25 -0.13 -6.95 16 6 C -0.05 -1.34 10.10 22.59 0.23 -1.12 16 7 C -0.16 -4.34 10.00 22.21 0.22 -4.12 16 8 C -0.09 -3.15 9.72 22.58 0.22 -2.93 16 9 C -0.03 -1.31 4.74 -19.97 -0.09 -1.40 16 10 C -0.23 -10.77 3.68 -19.49 -0.07 -10.84 16 11 C 0.12 5.32 10.92 85.02 0.93 6.25 16 12 N -0.59 -27.58 10.32 -196.13 -2.02 -29.61 16 13 C 0.08 3.67 11.08 84.20 0.93 4.60 16 14 C -0.23 -11.43 8.73 22.56 0.20 -11.24 16 15 C 0.13 6.56 3.92 -20.91 -0.08 6.48 16 16 C -0.45 -22.57 6.38 23.36 0.15 -22.42 16 17 H 0.07 3.73 5.60 -2.91 -0.02 3.71 16 18 C 0.05 2.27 5.19 85.33 0.44 2.72 16 19 N -0.80 -38.59 10.92 21.86 0.24 -38.35 16 20 Si 0.96 37.05 29.59 68.60 2.03 39.08 16 21 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 22 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 23 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 24 C 0.12 4.88 5.39 39.56 0.21 5.09 16 25 H 0.07 2.88 6.44 -2.38 -0.02 2.86 16 26 H 0.07 3.04 5.72 -2.39 -0.01 3.03 16 27 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 28 H 0.24 4.19 8.06 -2.91 -0.02 4.17 16 29 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 30 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 31 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 32 H 0.14 5.58 8.06 -2.91 -0.02 5.55 16 33 H 0.14 5.65 8.06 -2.91 -0.02 5.62 16 34 H 0.12 5.87 6.19 -2.91 -0.02 5.86 16 35 H 0.29 12.84 8.29 -92.71 -0.77 12.07 16 Total: -1.00 -61.21 294.84 4.78 -56.43 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: 1.13 Total: 28.37 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: 5.41 Total: -26.70 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -3.79 Total: -97.17 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 2.03 Total: 39.08 kcal Total: -61.21 4.78 -56.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241457927.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.449 kcal (2) G-P(sol) polarization free energy of solvation -61.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds