Wall clock time and date at job start Tue Mar 31 2020 01:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34050 * 125.03436 * 2 1 4 4 C 1.38423 * 107.82219 * 180.02562 * 3 2 1 5 5 C 1.40895 * 134.86308 * 179.97438 * 4 3 2 6 6 C 1.35976 * 120.57274 * 180.02562 * 5 4 3 7 7 C 1.38797 * 122.58647 * 359.74804 * 6 5 4 8 8 C 1.38877 * 121.34005 * 0.54538 * 7 6 5 9 9 C 1.47115 * 120.73117 * 179.75010 * 8 7 6 10 10 N 1.33018 * 120.33679 * 131.30415 * 9 8 7 11 11 C 1.31475 * 121.63250 * 179.72477 * 10 9 8 12 12 C 1.38848 * 122.19211 * 0.02562 * 11 10 9 13 13 C 1.36699 * 120.44286 * 359.95467 * 12 11 10 14 14 C 1.41280 * 118.37165 * 0.04209 * 13 12 11 15 15 C 1.40668 * 120.98878 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00520 * 151.76808 * 15 14 13 17 17 C 1.39965 * 119.99753 * 331.76887 * 15 14 13 18 18 N 1.30846 * 119.99886 * 161.43980 * 17 15 14 19 19 Si 1.86797 * 120.00018 * 341.43713 * 17 15 14 20 20 H 1.48505 * 109.46952 * 90.85073 * 19 17 15 21 21 H 1.48502 * 109.47202 * 210.85036 * 19 17 15 22 22 H 1.48503 * 109.47467 * 330.85390 * 19 17 15 23 23 C 1.46684 * 118.54326 * 359.47272 * 8 7 6 24 24 N 1.31486 * 134.95088 * 180.25393 * 23 8 7 25 25 H 1.08994 * 109.46901 * 269.99256 * 1 2 3 26 26 H 1.09001 * 109.47086 * 29.99618 * 1 2 3 27 27 H 1.09001 * 109.46599 * 149.99240 * 1 2 3 28 28 H 1.07997 * 126.09042 * 0.02562 * 3 2 1 29 29 H 1.08003 * 119.71444 * 0.03581 * 5 4 3 30 30 H 1.08001 * 118.70486 * 180.02562 * 6 5 4 31 31 H 1.08007 * 119.32913 * 180.27286 * 7 6 5 32 32 H 1.08002 * 118.90331 * 179.97438 * 11 10 9 33 33 H 1.08007 * 119.78118 * 179.97438 * 12 11 10 34 34 H 1.07998 * 120.81383 * 180.02562 * 13 12 11 35 35 H 0.96997 * 119.99590 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2346 1.0976 0.0000 4 6 3.5568 0.6880 -0.0006 5 6 4.8017 1.3478 -0.0013 6 6 5.9611 0.6373 -0.0023 7 6 5.9874 -0.7504 0.0025 8 6 4.8151 -1.4951 -0.0026 9 6 4.8586 -2.9656 -0.0029 10 7 4.1175 -3.6598 0.8562 11 6 4.1326 -4.9744 0.8746 12 6 4.9188 -5.7174 0.0041 13 6 5.7144 -5.0926 -0.9154 14 6 5.7145 -3.6803 -0.9538 15 6 6.5117 -2.9810 -1.8780 16 1 6.2055 -2.0057 -2.2262 17 6 7.7019 -3.5493 -2.3464 18 7 8.2535 -3.1002 -3.4447 19 14 8.5030 -4.9489 -1.4037 20 1 7.9940 -6.2463 -1.9164 21 1 9.9757 -4.8886 -1.5847 22 1 8.1762 -4.8245 0.0396 23 6 3.5326 -0.7832 -0.0015 24 7 2.2688 -1.1461 -0.0010 25 1 -0.3633 -0.0001 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3632 -0.8899 -0.5140 28 1 1.8852 2.1195 0.0004 29 1 4.8355 2.4273 -0.0009 30 1 6.8984 1.1739 -0.0024 31 1 6.9388 -1.2615 0.0059 32 1 3.5135 -5.4936 1.5912 33 1 4.9015 -6.7962 0.0535 34 1 6.3279 -5.6646 -1.5956 35 1 9.0785 -3.4939 -3.7691 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241464412.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:41 Heat of formation + Delta-G solvation = 127.303198 kcal Electronic energy + Delta-G solvation = -20662.487472 eV Core-core repulsion = 17626.846509 eV Total energy + Delta-G solvation = -3035.640963 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.64172 -38.33208 -36.39791 -34.06427 -32.35119 -31.92255 -31.29217 -29.63356 -27.79813 -26.90799 -25.43337 -22.86764 -21.84436 -21.32967 -20.90258 -19.32030 -17.52719 -16.85729 -16.36587 -15.88038 -15.31897 -15.24944 -14.59311 -14.50273 -13.57389 -13.50264 -13.24027 -12.83544 -12.79380 -12.66306 -12.28691 -12.13526 -11.99820 -11.41005 -11.18904 -11.01984 -10.83240 -10.75353 -10.31346 -10.00886 -9.68155 -9.59301 -9.52485 -8.49506 -8.12636 -7.96208 -7.72359 -7.14783 -6.73474 -4.57546 1.08559 2.28641 2.54918 2.69454 2.75325 3.01031 3.02408 3.14121 3.23103 3.83516 4.42979 4.52879 4.56443 4.84433 5.11137 5.16467 5.36472 5.40148 5.41236 5.66993 5.84441 5.90346 5.97711 6.05147 6.27358 6.33716 6.45635 6.51915 6.72326 6.89571 6.98628 7.14722 7.19484 7.23924 7.31301 7.52349 7.53127 7.66470 7.83591 8.15782 8.23162 8.46929 8.56861 9.51568 9.83844 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019552 B = 0.006373 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.720099 B = 4392.272989 C = 5320.962094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.342 5.342 3 C 0.049 3.951 4 C -0.198 4.198 5 C -0.081 4.081 6 C -0.129 4.129 7 C -0.084 4.084 8 C 0.047 3.953 9 C 0.034 3.966 10 N -0.427 5.427 11 C -0.051 4.051 12 C -0.114 4.114 13 C -0.224 4.224 14 C 0.066 3.934 15 C -0.411 4.411 16 H 0.104 0.896 17 C 0.083 3.917 18 N -0.785 5.785 19 Si 0.913 3.087 20 H -0.266 1.266 21 H -0.287 1.287 22 H -0.245 1.245 23 C 0.119 3.881 24 N -0.281 5.281 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.176 0.824 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.133 0.867 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.722 7.112 4.045 10.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.118 5.118 3 C -0.105 4.105 4 C -0.209 4.209 5 C -0.101 4.101 6 C -0.149 4.149 7 C -0.108 4.108 8 C 0.043 3.957 9 C -0.109 4.109 10 N -0.134 5.134 11 C -0.208 4.208 12 C -0.134 4.134 13 C -0.248 4.248 14 C 0.061 3.939 15 C -0.439 4.439 16 H 0.121 0.879 17 C -0.139 4.139 18 N -0.407 5.407 19 Si 0.739 3.261 20 H -0.192 1.192 21 H -0.214 1.214 22 H -0.168 1.168 23 C -0.038 4.038 24 N -0.106 5.106 25 H 0.095 0.905 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.193 0.807 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.151 0.849 32 H 0.139 0.861 33 H 0.118 0.882 34 H 0.128 0.872 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.102 6.531 4.413 11.304 hybrid contribution 1.316 -0.471 -0.498 1.484 sum -6.785 6.060 3.916 9.905 Atomic orbital electron populations 1.21904 0.74543 1.04536 1.03496 1.48583 1.07124 1.04342 1.51712 1.22424 0.90620 0.92803 1.04629 1.19531 0.92958 0.93516 1.14849 1.19945 0.90117 0.98189 1.01886 1.20302 0.97338 0.94072 1.03149 1.21047 0.97598 0.92985 0.99123 1.18277 0.87449 0.90014 0.99928 1.20388 1.02844 0.90547 0.97095 1.67208 1.16914 1.08517 1.20723 1.21513 1.05824 0.89605 1.03884 1.21240 0.96968 0.98903 0.96272 1.21075 1.05670 0.94476 1.03618 1.19449 0.92294 0.91533 0.90636 1.19481 1.02892 1.05108 1.16385 0.87859 1.26278 0.97231 0.96931 0.93457 1.69694 1.17158 1.37493 1.16316 0.86322 0.76726 0.80290 0.82749 1.19250 1.21419 1.16784 1.22064 0.91728 0.91953 0.98049 1.77671 1.01685 1.03057 1.28179 0.90473 0.89502 0.89026 0.80651 0.87012 0.86673 0.84878 0.86131 0.88170 0.87166 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.96 11.39 59.85 0.68 1.64 16 2 N -0.34 -5.46 3.95 -67.54 -0.27 -5.73 16 3 C 0.05 0.71 11.52 -16.52 -0.19 0.52 16 4 C -0.20 -3.64 6.34 -105.21 -0.67 -4.30 16 5 C -0.08 -1.34 10.03 -39.39 -0.40 -1.73 16 6 C -0.13 -2.28 9.83 -40.19 -0.39 -2.68 16 7 C -0.08 -1.79 8.08 -39.14 -0.32 -2.10 16 8 C 0.05 1.12 5.36 -102.65 -0.55 0.57 16 9 C 0.03 0.87 6.55 -80.41 -0.53 0.34 16 10 N -0.43 -10.90 10.28 -8.10 -0.08 -10.98 16 11 C -0.05 -1.18 11.11 -17.48 -0.19 -1.38 16 12 C -0.11 -2.56 9.98 -39.91 -0.40 -2.96 16 13 C -0.22 -5.46 7.37 -38.98 -0.29 -5.75 16 14 C 0.07 1.72 5.28 -104.48 -0.55 1.17 16 15 C -0.41 -10.71 7.71 -38.02 -0.29 -11.01 16 16 H 0.10 2.85 7.01 -52.49 -0.37 2.48 16 17 C 0.08 2.06 5.42 -17.33 -0.09 1.97 16 18 N -0.78 -19.64 13.93 55.55 0.77 -18.87 16 19 Si 0.91 19.92 24.56 -169.99 -4.17 15.74 16 20 H -0.27 -5.66 6.46 56.52 0.36 -5.29 16 21 H -0.29 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.24 -5.56 7.02 56.52 0.40 -5.16 16 23 C 0.12 2.66 7.45 -80.99 -0.60 2.05 16 24 N -0.28 -6.08 12.51 34.35 0.43 -5.65 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.09 0.55 8.13 -51.93 -0.42 0.13 16 27 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.18 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 30 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.13 2.84 7.27 -52.48 -0.38 2.46 16 32 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 33 H 0.10 1.90 8.06 -52.48 -0.42 1.48 16 34 H 0.11 2.60 4.52 -52.49 -0.24 2.37 16 35 H 0.29 6.53 8.30 -40.82 -0.34 6.19 16 LS Contribution 301.04 15.07 4.54 4.54 Total: -1.00 -32.14 301.04 -7.11 -39.25 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -3.54 Total: 5.35 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -4.78 Total: -23.65 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.85 Total: -41.23 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.17 Total: 15.74 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.14 -7.11 -39.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241464412.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.554 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds