Wall clock time and date at job start Tue Mar 31 2020 01:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34004 * 125.03426 * 2 1 4 4 C 1.38349 * 107.86515 * 180.02562 * 3 2 1 5 5 C 1.40975 * 134.88255 * 179.97438 * 4 3 2 6 6 C 1.35716 * 120.49387 * 180.02562 * 5 4 3 7 7 C 1.39119 * 122.54877 * 359.76526 * 6 5 4 8 8 C 1.38247 * 121.40140 * 0.52282 * 7 6 5 9 9 C 1.47879 * 120.69230 * 179.75920 * 8 7 6 10 10 C 1.40117 * 119.62797 * 354.26401 * 9 8 7 11 11 C 1.38620 * 119.45283 * 180.29920 * 10 9 8 12 12 C 1.38334 * 118.71510 * 359.47508 * 11 10 9 13 13 C 1.40716 * 119.22614 * 0.49932 * 12 11 10 14 14 C 1.41332 * 119.75996 * 179.74638 * 13 12 11 15 15 H 1.08003 * 120.00002 * 152.18803 * 14 13 12 16 16 C 1.39945 * 120.00220 * 332.18275 * 14 13 12 17 17 N 1.30784 * 120.00411 * 159.64259 * 16 14 13 18 18 Si 1.86800 * 119.99887 * 339.64787 * 16 14 13 19 19 H 1.48496 * 109.47275 * 91.36689 * 18 16 14 20 20 H 1.48499 * 109.47364 * 211.36989 * 18 16 14 21 21 H 1.48507 * 109.47127 * 331.36971 * 18 16 14 22 22 N 1.32415 * 119.62731 * 174.27835 * 9 8 7 23 23 C 1.46470 * 118.61380 * 359.48591 * 8 7 6 24 24 N 1.31628 * 134.96275 * 180.22747 * 23 8 7 25 25 H 1.08998 * 109.47376 * 89.99206 * 1 2 3 26 26 H 1.08999 * 109.47370 * 209.99663 * 1 2 3 27 27 H 1.09006 * 109.47403 * 329.99720 * 1 2 3 28 28 H 1.08005 * 126.06586 * 0.02717 * 3 2 1 29 29 H 1.08004 * 119.75238 * 0.05241 * 5 4 3 30 30 H 1.07995 * 118.72565 * 180.02562 * 6 5 4 31 31 H 1.08002 * 119.29686 * 180.26228 * 7 6 5 32 32 H 1.07998 * 120.27180 * 0.02562 * 10 9 8 33 33 H 1.08005 * 120.64047 * 179.69680 * 11 10 9 34 34 H 1.08000 * 120.38755 * 180.24738 * 12 11 10 35 35 H 0.96998 * 120.00114 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2343 1.0972 0.0000 4 6 3.5561 0.6888 -0.0006 5 6 4.8014 1.3496 -0.0013 6 6 5.9579 0.6393 -0.0023 7 6 5.9820 -0.7517 0.0022 8 6 4.8146 -1.4923 -0.0028 9 6 4.8585 -2.9705 -0.0033 10 6 6.0909 -3.6268 -0.1204 11 6 6.1273 -5.0125 -0.1267 12 6 4.9383 -5.7091 -0.0054 13 6 3.7318 -4.9942 0.1096 14 6 2.5100 -5.6945 0.2287 15 1 1.6768 -5.2427 0.7466 16 6 2.3796 -6.9733 -0.3245 17 7 1.4399 -7.7773 0.1011 18 14 3.5478 -7.5321 -1.6707 19 1 4.7150 -8.2177 -1.0602 20 1 2.8425 -8.4706 -2.5801 21 1 4.0147 -6.3522 -2.4422 22 7 3.7327 -3.6588 0.1066 23 6 3.5335 -0.7824 -0.0015 24 7 2.2685 -1.1462 -0.0013 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.8844 2.1191 0.0004 29 1 4.8354 2.4291 -0.0007 30 1 6.8958 1.1746 -0.0024 31 1 6.9329 -1.2638 0.0054 32 1 7.0045 -3.0578 -0.2094 33 1 7.0661 -5.5381 -0.2209 34 1 4.9357 -6.7891 -0.0031 35 1 1.3498 -8.6638 -0.2821 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241465198.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:44 Heat of formation + Delta-G solvation = 131.682307 kcal Electronic energy + Delta-G solvation = -20373.072904 eV Core-core repulsion = 17337.621833 eV Total energy + Delta-G solvation = -3035.451071 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.81007 -38.53899 -36.72932 -33.81577 -32.48227 -32.07196 -31.02029 -29.87085 -28.16460 -27.00504 -25.48336 -23.27309 -21.84983 -21.58929 -20.63470 -19.62823 -17.64979 -16.62079 -16.51304 -15.95801 -15.33799 -15.30627 -14.75463 -14.42120 -14.00803 -13.48543 -13.16133 -12.95824 -12.78303 -12.73935 -12.50181 -12.31106 -11.69206 -11.62259 -11.20809 -11.09453 -10.99494 -10.70316 -10.32564 -9.95702 -9.84150 -9.79478 -9.23902 -8.59302 -8.32789 -7.90451 -7.79842 -6.97954 -6.82714 -4.56819 0.78414 2.10884 2.50387 2.62254 2.64703 2.99470 3.09328 3.21111 3.30605 3.95823 4.17838 4.45347 4.60727 4.70412 5.02337 5.14856 5.17587 5.24139 5.46168 5.61459 5.63327 5.65963 5.70646 5.93280 6.02614 6.30552 6.32153 6.44099 6.53306 6.74476 6.84273 6.95122 6.99693 7.10687 7.14768 7.25382 7.49606 7.52780 7.82344 8.12715 8.35266 8.51838 8.74497 9.70189 10.04577 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018700 B = 0.005883 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.997201 B = 4758.297075 C = 6037.598239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.338 5.338 3 C 0.055 3.945 4 C -0.211 4.211 5 C -0.056 4.056 6 C -0.148 4.148 7 C -0.091 4.091 8 C 0.010 3.990 9 C 0.186 3.814 10 C -0.285 4.285 11 C -0.048 4.048 12 C -0.285 4.285 13 C 0.256 3.744 14 C -0.417 4.417 15 H 0.098 0.902 16 C 0.089 3.911 17 N -0.798 5.798 18 Si 0.914 3.086 19 H -0.267 1.267 20 H -0.289 1.289 21 H -0.251 1.251 22 N -0.509 5.509 23 C 0.117 3.883 24 N -0.240 5.240 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.178 0.822 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.130 0.870 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.559 15.171 -1.468 15.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.113 5.113 3 C -0.099 4.099 4 C -0.221 4.221 5 C -0.076 4.076 6 C -0.167 4.167 7 C -0.114 4.114 8 C 0.006 3.994 9 C 0.043 3.957 10 C -0.308 4.308 11 C -0.073 4.073 12 C -0.307 4.307 13 C 0.130 3.870 14 C -0.448 4.448 15 H 0.116 0.884 16 C -0.132 4.132 17 N -0.423 5.423 18 Si 0.740 3.260 19 H -0.193 1.193 20 H -0.216 1.216 21 H -0.174 1.174 22 N -0.222 5.222 23 C -0.041 4.041 24 N -0.064 5.064 25 H 0.098 0.902 26 H 0.116 0.884 27 H 0.106 0.894 28 H 0.195 0.805 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.147 0.853 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.480 14.269 -1.362 14.342 hybrid contribution 1.676 -0.176 -0.648 1.805 sum 2.155 14.093 -2.010 14.398 Atomic orbital electron populations 1.21988 0.74095 1.04896 1.03842 1.48876 1.07632 1.04483 1.50324 1.22476 0.90560 0.93096 1.03785 1.19555 0.93044 0.93565 1.15937 1.20017 0.90144 0.98433 0.99021 1.20232 0.97557 0.93721 1.05222 1.20949 0.96971 0.93519 0.99978 1.18851 0.88406 0.90652 1.01462 1.19469 0.89914 0.90973 0.95382 1.21262 0.96986 0.94475 1.18095 1.20878 0.96909 0.93862 0.95616 1.22051 0.93881 0.99643 1.15140 1.18582 0.92681 0.87535 0.88226 1.19157 0.98319 0.97255 1.30073 0.88414 1.26068 0.95310 0.95015 0.96807 1.69661 1.29696 1.07230 1.35683 0.86349 0.79513 0.79441 0.80685 1.19324 1.21613 1.17405 1.68463 1.27097 1.08071 1.18569 1.21836 0.91888 0.91441 0.98907 1.78197 1.01336 1.01555 1.25295 0.90191 0.88429 0.89421 0.80519 0.86670 0.86462 0.85267 0.87439 0.87699 0.87143 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 11.39 59.85 0.68 1.64 16 2 N -0.34 -5.29 3.95 -67.57 -0.27 -5.56 16 3 C 0.05 0.73 11.51 -16.56 -0.19 0.54 16 4 C -0.21 -3.44 6.34 -105.21 -0.67 -4.10 16 5 C -0.06 -0.76 10.03 -39.45 -0.40 -1.15 16 6 C -0.15 -2.04 9.83 -40.16 -0.39 -2.43 16 7 C -0.09 -1.51 9.37 -39.25 -0.37 -1.88 16 8 C 0.01 0.21 6.05 -102.63 -0.62 -0.41 16 9 C 0.19 4.50 6.74 -82.96 -0.56 3.94 16 10 C -0.29 -6.24 9.48 -38.74 -0.37 -6.61 16 11 C -0.05 -1.09 10.14 -39.41 -0.40 -1.49 16 12 C -0.28 -7.23 7.35 -38.61 -0.28 -7.51 16 13 C 0.26 7.14 5.98 -85.01 -0.51 6.63 16 14 C -0.42 -12.06 9.77 -37.77 -0.37 -12.43 16 15 H 0.10 3.03 8.06 -52.48 -0.42 2.60 16 16 C 0.09 2.40 5.38 -17.36 -0.09 2.31 16 17 N -0.80 -21.54 13.93 55.55 0.77 -20.76 16 18 Si 0.91 21.41 24.58 -169.99 -4.18 17.24 16 19 H -0.27 -5.96 6.45 56.52 0.36 -5.60 16 20 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.25 -6.18 7.07 56.52 0.40 -5.78 16 22 N -0.51 -13.98 9.32 -7.72 -0.07 -14.05 16 23 C 0.12 2.45 7.25 -81.03 -0.59 1.86 16 24 N -0.24 -5.18 11.95 34.32 0.41 -4.77 16 25 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.09 0.56 8.13 -51.93 -0.42 0.14 16 28 H 0.18 1.43 8.06 -52.48 -0.42 1.00 16 29 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 30 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.13 1.89 6.18 -52.49 -0.32 1.56 16 32 H 0.11 1.95 6.24 -52.49 -0.33 1.62 16 33 H 0.10 1.96 8.06 -52.48 -0.42 1.54 16 34 H 0.11 2.73 4.47 -52.49 -0.23 2.50 16 35 H 0.29 6.95 8.29 -40.82 -0.34 6.61 16 LS Contribution 300.85 15.07 4.53 4.53 Total: -1.00 -34.42 300.85 -7.36 -41.78 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -3.44 Total: 2.68 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -5.12 Total: -21.09 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.84 Total: -45.14 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.18 Total: 17.24 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.42 -7.36 -41.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241465198.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.463 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds