Wall clock time and date at job start Tue Mar 31 2020 01:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34004 * 125.03426 * 2 1 4 4 C 1.38349 * 107.86515 * 180.02562 * 3 2 1 5 5 C 1.40975 * 134.88255 * 179.97438 * 4 3 2 6 6 C 1.35716 * 120.49387 * 180.02562 * 5 4 3 7 7 C 1.39119 * 122.54877 * 359.76526 * 6 5 4 8 8 C 1.38247 * 121.40140 * 0.52282 * 7 6 5 9 9 C 1.47879 * 120.69230 * 179.75920 * 8 7 6 10 10 C 1.40117 * 119.62797 * 354.26401 * 9 8 7 11 11 C 1.38620 * 119.45283 * 180.29920 * 10 9 8 12 12 C 1.38334 * 118.71510 * 359.47508 * 11 10 9 13 13 C 1.40716 * 119.22614 * 0.49932 * 12 11 10 14 14 C 1.41332 * 119.75996 * 179.74638 * 13 12 11 15 15 H 1.08003 * 120.00002 * 152.18803 * 14 13 12 16 16 C 1.39945 * 120.00220 * 332.18275 * 14 13 12 17 17 N 1.30784 * 120.00411 * 159.64259 * 16 14 13 18 18 Si 1.86800 * 119.99887 * 339.64787 * 16 14 13 19 19 H 1.48496 * 109.47275 * 91.36689 * 18 16 14 20 20 H 1.48499 * 109.47364 * 211.36989 * 18 16 14 21 21 H 1.48507 * 109.47127 * 331.36971 * 18 16 14 22 22 N 1.32415 * 119.62731 * 174.27835 * 9 8 7 23 23 C 1.46470 * 118.61380 * 359.48591 * 8 7 6 24 24 N 1.31628 * 134.96275 * 180.22747 * 23 8 7 25 25 H 1.08998 * 109.47376 * 89.99206 * 1 2 3 26 26 H 1.08999 * 109.47370 * 209.99663 * 1 2 3 27 27 H 1.09006 * 109.47403 * 329.99720 * 1 2 3 28 28 H 1.08005 * 126.06586 * 0.02717 * 3 2 1 29 29 H 1.08004 * 119.75238 * 0.05241 * 5 4 3 30 30 H 1.07995 * 118.72565 * 180.02562 * 6 5 4 31 31 H 1.08002 * 119.29686 * 180.26228 * 7 6 5 32 32 H 1.07998 * 120.27180 * 0.02562 * 10 9 8 33 33 H 1.08005 * 120.64047 * 179.69680 * 11 10 9 34 34 H 1.08000 * 120.38755 * 180.24738 * 12 11 10 35 35 H 0.96998 * 120.00114 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2343 1.0972 0.0000 4 6 3.5561 0.6888 -0.0006 5 6 4.8014 1.3496 -0.0013 6 6 5.9579 0.6393 -0.0023 7 6 5.9820 -0.7517 0.0022 8 6 4.8146 -1.4923 -0.0028 9 6 4.8585 -2.9705 -0.0033 10 6 6.0909 -3.6268 -0.1204 11 6 6.1273 -5.0125 -0.1267 12 6 4.9383 -5.7091 -0.0054 13 6 3.7318 -4.9942 0.1096 14 6 2.5100 -5.6945 0.2287 15 1 1.6768 -5.2427 0.7466 16 6 2.3796 -6.9733 -0.3245 17 7 1.4399 -7.7773 0.1011 18 14 3.5478 -7.5321 -1.6707 19 1 4.7150 -8.2177 -1.0602 20 1 2.8425 -8.4706 -2.5801 21 1 4.0147 -6.3522 -2.4422 22 7 3.7327 -3.6588 0.1066 23 6 3.5335 -0.7824 -0.0015 24 7 2.2685 -1.1462 -0.0013 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.8844 2.1191 0.0004 29 1 4.8354 2.4291 -0.0007 30 1 6.8958 1.1746 -0.0024 31 1 6.9329 -1.2638 0.0054 32 1 7.0045 -3.0578 -0.2094 33 1 7.0661 -5.5381 -0.2209 34 1 4.9357 -6.7891 -0.0031 35 1 1.3498 -8.6638 -0.2821 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241465198.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:43 Heat of formation + Delta-G solvation = 107.226775 kcal Electronic energy + Delta-G solvation = -20374.133375 eV Core-core repulsion = 17337.621833 eV Total energy + Delta-G solvation = -3036.511542 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.00832 -40.34592 -37.98077 -35.75334 -33.76230 -33.48615 -32.85023 -31.38738 -29.56314 -28.07867 -27.35254 -24.73070 -23.37706 -22.98969 -22.21229 -21.00484 -19.41718 -17.95976 -17.76952 -17.67823 -16.74725 -16.43442 -16.41358 -16.20992 -15.46911 -14.93089 -14.73292 -14.44886 -14.11211 -14.06027 -13.85819 -13.64539 -13.42505 -13.10944 -12.73471 -12.57262 -12.31219 -12.28777 -12.17185 -11.80191 -11.29661 -11.05993 -11.01676 -10.38481 -9.88908 -9.67869 -9.33920 -8.99598 -8.20881 -6.68089 -0.46133 0.65467 0.82262 1.09491 1.17971 1.34981 1.39994 1.64057 1.67268 2.06230 2.51206 3.01374 3.34266 3.60869 3.69527 3.80788 4.06901 4.24215 4.31143 4.36936 4.46658 4.49360 4.55045 4.60355 4.64044 4.65543 4.79388 4.98362 5.00246 5.25025 5.30325 5.43352 5.61321 5.64688 5.71781 5.80309 5.93757 6.04461 6.17904 6.21084 6.49576 6.69945 6.90269 7.82657 8.10611 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018700 B = 0.005883 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.997201 B = 4758.297075 C = 6037.598239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.343 5.343 3 C 0.095 3.905 4 C -0.244 4.244 5 C -0.021 4.021 6 C -0.172 4.172 7 C -0.050 4.050 8 C -0.074 4.074 9 C 0.174 3.826 10 C -0.275 4.275 11 C -0.045 4.045 12 C -0.308 4.308 13 C 0.238 3.762 14 C -0.465 4.465 15 H 0.045 0.955 16 C 0.056 3.944 17 N -0.836 5.836 18 Si 0.975 3.025 19 H -0.242 1.242 20 H -0.267 1.267 21 H -0.274 1.274 22 N -0.551 5.551 23 C 0.088 3.912 24 N -0.332 5.332 25 H 0.093 0.907 26 H 0.073 0.927 27 H 0.139 0.861 28 H 0.243 0.757 29 H 0.166 0.834 30 H 0.162 0.838 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.114 0.886 35 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.653 19.151 -2.449 20.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.117 5.117 3 C -0.061 4.061 4 C -0.254 4.254 5 C -0.041 4.041 6 C -0.192 4.192 7 C -0.072 4.072 8 C -0.078 4.078 9 C 0.032 3.968 10 C -0.296 4.296 11 C -0.069 4.069 12 C -0.330 4.330 13 C 0.111 3.889 14 C -0.498 4.498 15 H 0.064 0.936 16 C -0.161 4.161 17 N -0.462 5.462 18 Si 0.797 3.203 19 H -0.167 1.167 20 H -0.192 1.192 21 H -0.199 1.199 22 N -0.265 5.265 23 C -0.068 4.068 24 N -0.158 5.158 25 H 0.112 0.888 26 H 0.092 0.908 27 H 0.157 0.843 28 H 0.259 0.741 29 H 0.184 0.816 30 H 0.180 0.820 31 H 0.167 0.833 32 H 0.171 0.829 33 H 0.170 0.830 34 H 0.132 0.868 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.572 18.236 -2.327 18.728 hybrid contribution 0.736 -0.885 -0.283 1.185 sum 4.308 17.351 -2.611 18.068 Atomic orbital electron populations 1.22374 0.71754 1.06263 1.05200 1.49248 1.09129 1.04094 1.49196 1.23530 0.89288 0.94767 0.98491 1.20137 0.95556 0.91564 1.18144 1.20656 0.88673 1.00865 0.93906 1.20679 0.99767 0.92435 1.06286 1.21380 0.96023 0.95097 0.94741 1.19007 0.90548 0.89293 1.09001 1.20267 0.89837 0.93203 0.93537 1.21831 0.97873 0.94778 1.15159 1.21410 0.97562 0.94325 0.93593 1.22106 0.94133 0.99935 1.16842 1.18736 0.93239 0.88305 0.88591 1.19046 0.98082 0.99205 1.33417 0.93644 1.26742 0.96995 0.94247 0.98130 1.69670 1.31339 1.08091 1.37142 0.85433 0.78480 0.78499 0.77846 1.16668 1.19246 1.19851 1.68462 1.29692 1.08119 1.20220 1.22217 0.91685 0.94196 0.98735 1.78095 1.02892 1.05139 1.29656 0.88827 0.90792 0.84279 0.74115 0.81625 0.82046 0.83338 0.82920 0.83001 0.86825 0.88996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.68 11.39 127.77 1.45 3.13 16 2 N -0.34 -10.60 3.95 -367.71 -1.45 -12.06 16 3 C 0.10 2.20 11.51 84.39 0.97 3.17 16 4 C -0.24 -7.30 6.34 -20.24 -0.13 -7.43 16 5 C -0.02 -0.46 10.03 22.36 0.22 -0.24 16 6 C -0.17 -3.92 9.83 21.90 0.22 -3.71 16 7 C -0.05 -1.52 9.37 22.48 0.21 -1.31 16 8 C -0.07 -3.17 6.05 -18.58 -0.11 -3.29 16 9 C 0.17 8.69 6.74 42.07 0.28 8.97 16 10 C -0.27 -11.68 9.48 22.82 0.22 -11.46 16 11 C -0.04 -1.94 10.14 22.38 0.23 -1.72 16 12 C -0.31 -16.06 7.35 22.90 0.17 -15.89 16 13 C 0.24 14.32 5.98 40.25 0.24 14.56 16 14 C -0.47 -29.81 9.77 23.44 0.23 -29.58 16 15 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 16 C 0.06 3.22 5.38 85.26 0.46 3.68 16 17 N -0.84 -48.19 13.93 21.82 0.30 -47.88 16 18 Si 0.97 45.81 24.58 68.60 1.69 47.49 16 19 H -0.24 -10.30 6.45 99.48 0.64 -9.66 16 20 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 21 H -0.27 -13.76 7.07 99.48 0.70 -13.05 16 22 N -0.55 -32.68 9.32 -178.32 -1.66 -34.34 16 23 C 0.09 3.78 7.25 43.66 0.32 4.10 16 24 N -0.33 -15.31 11.95 -45.33 -0.54 -15.86 16 25 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.14 1.30 8.13 -2.38 -0.02 1.28 16 28 H 0.24 2.15 8.06 -2.91 -0.02 2.13 16 29 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 30 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 31 H 0.15 3.73 6.18 -2.91 -0.02 3.71 16 32 H 0.15 4.94 6.24 -2.91 -0.02 4.92 16 33 H 0.15 5.08 8.06 -2.91 -0.02 5.06 16 34 H 0.11 5.70 4.47 -2.91 -0.01 5.68 16 35 H 0.30 15.17 8.29 -92.71 -0.77 14.41 16 Total: -1.00 -89.37 300.85 4.37 -85.00 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 1.06 Total: 14.64 kcal Atomic # 6 Polarization: -41.97 SS G_CDS: 4.98 Total: -37.00 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -3.35 Total: -110.13 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.69 Total: 47.49 kcal Total: -89.37 4.37 -85.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241465198.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.225 kcal (2) G-P(sol) polarization free energy of solvation -89.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds