Wall clock time and date at job start Tue Mar 31 2020 01:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.33999 * 125.03616 * 2 1 4 4 C 1.38313 * 107.87659 * 179.97438 * 3 2 1 5 5 C 1.41021 * 134.88077 * 179.97438 * 4 3 2 6 6 C 1.35648 * 120.47289 * 180.02562 * 5 4 3 7 7 C 1.39200 * 122.54628 * 0.02562 * 6 5 4 8 8 C 1.38108 * 121.41413 * 359.97438 * 7 6 5 9 9 C 1.48003 * 120.68388 * 179.97438 * 8 7 6 10 10 C 1.39117 * 119.63440 * 0.02562 * 9 8 7 11 11 C 1.40797 * 118.74477 * 179.97438 * 10 9 8 12 12 C 1.41525 * 120.97961 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99872 * 330.83685 * 12 11 10 14 14 C 1.40040 * 120.00403 * 150.84266 * 12 11 10 15 15 N 1.30730 * 120.00514 * 161.63586 * 14 12 11 16 16 Si 1.86809 * 119.99695 * 341.63664 * 14 12 11 17 17 H 1.48495 * 109.47134 * 95.39496 * 16 14 12 18 18 H 1.48502 * 109.46985 * 215.39482 * 16 14 12 19 19 H 1.48502 * 109.46908 * 335.39171 * 16 14 12 20 20 C 1.41172 * 118.04445 * 359.97438 * 11 10 9 21 21 C 1.37714 * 119.11543 * 359.97438 * 20 11 10 22 22 N 1.31933 * 121.17886 * 359.74193 * 21 20 11 23 23 C 1.46445 * 118.63178 * 0.02562 * 8 7 6 24 24 N 1.31647 * 134.96600 * 180.32094 * 23 8 7 25 25 H 1.09002 * 109.46480 * 89.99999 * 1 2 3 26 26 H 1.08993 * 109.47652 * 209.99944 * 1 2 3 27 27 H 1.09004 * 109.47013 * 330.00621 * 1 2 3 28 28 H 1.08004 * 126.06522 * 359.94195 * 3 2 1 29 29 H 1.08000 * 119.76574 * 0.02663 * 5 4 3 30 30 H 1.07994 * 118.72415 * 179.97438 * 6 5 4 31 31 H 1.07999 * 119.29186 * 180.02562 * 7 6 5 32 32 H 1.07994 * 120.62841 * 359.97438 * 10 9 8 33 33 H 0.97003 * 120.00223 * 179.97438 * 15 14 12 34 34 H 1.08008 * 120.44517 * 179.97438 * 20 11 10 35 35 H 1.07994 * 119.41319 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2343 1.0972 0.0000 4 6 3.5558 0.6891 0.0006 5 6 4.8014 1.3503 0.0004 6 6 5.9572 0.6402 0.0007 7 6 5.9810 -0.7516 0.0005 8 6 4.8148 -1.4915 0.0007 9 6 4.8589 -2.9709 0.0000 10 6 6.0881 -3.6224 -0.0003 11 6 6.1083 -5.0302 -0.0004 12 6 7.3319 -5.7413 -0.0012 13 1 8.2089 -5.3064 -0.4576 14 6 7.4057 -7.0089 0.5895 15 7 8.3927 -7.8126 0.2914 16 14 6.0936 -7.5513 1.8035 17 1 5.0577 -8.3424 1.0921 18 1 6.7143 -8.3871 2.8625 19 1 5.4659 -6.3554 2.4210 20 6 4.8719 -5.7117 0.0003 21 6 3.7043 -4.9815 0.0017 22 7 3.7237 -3.6623 0.0073 23 6 3.5337 -0.7821 0.0004 24 7 2.2686 -1.1462 0.0057 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8901 0.5138 28 1 1.8845 2.1190 -0.0009 29 1 4.8355 2.4297 0.0001 30 1 6.8952 1.1754 0.0001 31 1 6.9318 -1.2639 0.0012 32 1 7.0095 -3.0590 -0.0004 33 1 8.4439 -8.6905 0.7008 34 1 4.8421 -6.7914 -0.0001 35 1 2.7558 -5.4979 0.0018 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241465433.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:47 Heat of formation + Delta-G solvation = 126.180394 kcal Electronic energy + Delta-G solvation = -20164.112715 eV Core-core repulsion = 17128.423064 eV Total energy + Delta-G solvation = -3035.689651 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.88828 -38.58658 -36.75202 -34.03246 -32.54132 -32.17652 -31.24788 -29.64133 -27.71333 -27.11391 -25.82374 -23.28884 -22.03322 -21.50192 -20.80480 -19.60482 -17.64780 -16.70135 -16.59008 -15.87889 -15.44868 -15.21467 -14.78373 -14.41186 -14.05514 -13.41881 -13.22350 -13.13246 -12.92359 -12.81879 -12.73191 -12.52726 -11.63486 -11.54687 -11.19070 -11.12230 -10.89760 -10.76460 -10.58758 -9.94784 -9.90283 -9.77557 -9.35883 -8.51011 -8.20633 -8.00852 -7.97396 -7.03476 -6.83378 -4.67209 0.75126 2.08403 2.44047 2.53509 2.63839 2.95463 3.10723 3.19309 3.31134 3.93749 4.16529 4.36050 4.63196 4.66814 4.93704 5.01661 5.10927 5.22923 5.28092 5.47752 5.59719 5.62438 5.65218 5.94956 6.06671 6.29921 6.43288 6.48306 6.62128 6.71843 6.84872 6.92182 6.97511 7.04366 7.15532 7.24051 7.29812 7.68203 7.94344 8.04006 8.24886 8.48044 8.69254 9.44088 9.98139 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025792 B = 0.004730 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.352053 B = 5918.714921 C = 6799.155517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.342 5.342 3 C 0.055 3.945 4 C -0.208 4.208 5 C -0.062 4.062 6 C -0.141 4.141 7 C -0.092 4.092 8 C 0.012 3.988 9 C 0.161 3.839 10 C -0.235 4.235 11 C 0.109 3.891 12 C -0.442 4.442 13 H 0.094 0.906 14 C 0.088 3.912 15 N -0.800 5.800 16 Si 0.912 3.088 17 H -0.268 1.268 18 H -0.289 1.289 19 H -0.246 1.246 20 C -0.286 4.286 21 C 0.118 3.882 22 N -0.541 5.541 23 C 0.120 3.880 24 N -0.252 5.252 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.178 0.822 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.133 0.867 32 H 0.113 0.887 33 H 0.287 0.713 34 H 0.107 0.893 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.131 15.207 0.768 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.118 5.118 3 C -0.099 4.099 4 C -0.218 4.218 5 C -0.082 4.082 6 C -0.161 4.161 7 C -0.115 4.115 8 C 0.008 3.992 9 C 0.030 3.970 10 C -0.258 4.258 11 C 0.101 3.899 12 C -0.472 4.472 13 H 0.112 0.888 14 C -0.132 4.132 15 N -0.424 5.424 16 Si 0.738 3.262 17 H -0.194 1.194 18 H -0.216 1.216 19 H -0.169 1.169 20 C -0.308 4.308 21 C -0.038 4.038 22 N -0.255 5.255 23 C -0.037 4.037 24 N -0.076 5.076 25 H 0.097 0.903 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.195 0.805 29 H 0.134 0.866 30 H 0.137 0.863 31 H 0.151 0.849 32 H 0.131 0.869 33 H 0.098 0.902 34 H 0.125 0.875 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.799 14.411 0.781 18.642 hybrid contribution 0.807 -0.263 0.454 0.963 sum -10.992 14.148 1.236 17.959 Atomic orbital electron populations 1.21948 0.74267 1.04720 1.03706 1.48797 1.07456 1.04525 1.50980 1.22450 0.90569 0.93045 1.03809 1.19570 0.93061 0.93587 1.15620 1.20009 0.90109 0.98478 0.99602 1.20283 0.97657 0.93744 1.04382 1.21028 0.97325 0.93565 0.99581 1.18818 0.88267 0.90687 1.01446 1.19152 0.89729 0.90645 0.97492 1.21940 0.96425 0.94637 1.12776 1.17835 0.92897 0.91568 0.87636 1.19476 0.96470 0.99165 1.32073 0.88771 1.26152 0.96109 0.94931 0.96036 1.69647 1.30102 1.07568 1.35082 0.86292 0.80170 0.79851 0.79855 1.19391 1.21635 1.16902 1.21975 0.93939 0.99308 1.15594 1.21923 0.96548 0.89864 0.95415 1.67605 1.28704 1.08056 1.21088 1.21828 0.91792 0.91511 0.98588 1.78031 1.01410 1.01860 1.26296 0.90291 0.88759 0.89431 0.80520 0.86628 0.86297 0.84895 0.86865 0.90223 0.87535 0.85722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.80 11.39 59.85 0.68 1.48 16 2 N -0.34 -4.81 3.95 -67.59 -0.27 -5.07 16 3 C 0.05 0.68 11.51 -16.58 -0.19 0.49 16 4 C -0.21 -3.27 6.34 -105.20 -0.67 -3.94 16 5 C -0.06 -0.84 10.03 -39.45 -0.40 -1.23 16 6 C -0.14 -2.00 9.83 -40.15 -0.39 -2.40 16 7 C -0.09 -1.60 9.37 -39.27 -0.37 -1.96 16 8 C 0.01 0.24 6.06 -102.64 -0.62 -0.38 16 9 C 0.16 3.84 6.74 -83.06 -0.56 3.28 16 10 C -0.24 -5.68 9.26 -38.29 -0.35 -6.03 16 11 C 0.11 2.81 5.13 -106.56 -0.55 2.27 16 12 C -0.44 -11.89 9.63 -37.65 -0.36 -12.25 16 13 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16 14 C 0.09 2.30 5.42 -17.35 -0.09 2.20 16 15 N -0.80 -21.00 13.92 55.55 0.77 -20.23 16 16 Si 0.91 20.87 24.54 -169.99 -4.17 16.70 16 17 H -0.27 -5.92 6.70 56.52 0.38 -5.54 16 18 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.25 -5.90 6.85 56.52 0.39 -5.51 16 20 C -0.29 -7.11 7.28 -38.66 -0.28 -7.39 16 21 C 0.12 2.80 11.15 -17.70 -0.20 2.60 16 22 N -0.54 -13.33 9.33 -9.97 -0.09 -13.42 16 23 C 0.12 2.40 7.26 -81.03 -0.59 1.81 16 24 N -0.25 -4.94 11.93 34.32 0.41 -4.53 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 0.42 8.13 -51.93 -0.42 0.00 16 28 H 0.18 1.29 8.06 -52.48 -0.42 0.87 16 29 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.13 2.15 6.15 -52.49 -0.32 1.83 16 32 H 0.11 2.47 6.21 -52.49 -0.33 2.15 16 33 H 0.29 6.81 8.29 -40.82 -0.34 6.47 16 34 H 0.11 2.58 4.76 -52.48 -0.25 2.33 16 35 H 0.13 2.57 8.06 -52.49 -0.42 2.15 16 LS Contribution 300.83 15.07 4.53 4.53 Total: -1.00 -33.11 300.83 -7.21 -40.31 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -3.45 Total: 3.16 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -4.94 Total: -21.44 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.82 Total: -43.26 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.17 Total: 16.70 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.11 -7.21 -40.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241465433.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.493 kcal (2) G-P(sol) polarization free energy of solvation -33.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds