Wall clock time and date at job start Tue Mar 31 2020 01:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.33999 * 125.03616 * 2 1 4 4 C 1.38313 * 107.87659 * 179.97438 * 3 2 1 5 5 C 1.41021 * 134.88077 * 179.97438 * 4 3 2 6 6 C 1.35648 * 120.47289 * 180.02562 * 5 4 3 7 7 C 1.39200 * 122.54628 * 0.02562 * 6 5 4 8 8 C 1.38108 * 121.41413 * 359.97438 * 7 6 5 9 9 C 1.48003 * 120.68388 * 179.97438 * 8 7 6 10 10 C 1.39117 * 119.63440 * 0.02562 * 9 8 7 11 11 C 1.40797 * 118.74477 * 179.97438 * 10 9 8 12 12 C 1.41525 * 120.97961 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99872 * 330.83685 * 12 11 10 14 14 C 1.40040 * 120.00403 * 150.84266 * 12 11 10 15 15 N 1.30730 * 120.00514 * 161.63586 * 14 12 11 16 16 Si 1.86809 * 119.99695 * 341.63664 * 14 12 11 17 17 H 1.48495 * 109.47134 * 95.39496 * 16 14 12 18 18 H 1.48502 * 109.46985 * 215.39482 * 16 14 12 19 19 H 1.48502 * 109.46908 * 335.39171 * 16 14 12 20 20 C 1.41172 * 118.04445 * 359.97438 * 11 10 9 21 21 C 1.37714 * 119.11543 * 359.97438 * 20 11 10 22 22 N 1.31933 * 121.17886 * 359.74193 * 21 20 11 23 23 C 1.46445 * 118.63178 * 0.02562 * 8 7 6 24 24 N 1.31647 * 134.96600 * 180.32094 * 23 8 7 25 25 H 1.09002 * 109.46480 * 89.99999 * 1 2 3 26 26 H 1.08993 * 109.47652 * 209.99944 * 1 2 3 27 27 H 1.09004 * 109.47013 * 330.00621 * 1 2 3 28 28 H 1.08004 * 126.06522 * 359.94195 * 3 2 1 29 29 H 1.08000 * 119.76574 * 0.02663 * 5 4 3 30 30 H 1.07994 * 118.72415 * 179.97438 * 6 5 4 31 31 H 1.07999 * 119.29186 * 180.02562 * 7 6 5 32 32 H 1.07994 * 120.62841 * 359.97438 * 10 9 8 33 33 H 0.97003 * 120.00223 * 179.97438 * 15 14 12 34 34 H 1.08008 * 120.44517 * 179.97438 * 20 11 10 35 35 H 1.07994 * 119.41319 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2343 1.0972 0.0000 4 6 3.5558 0.6891 0.0006 5 6 4.8014 1.3503 0.0004 6 6 5.9572 0.6402 0.0007 7 6 5.9810 -0.7516 0.0005 8 6 4.8148 -1.4915 0.0007 9 6 4.8589 -2.9709 0.0000 10 6 6.0881 -3.6224 -0.0003 11 6 6.1083 -5.0302 -0.0004 12 6 7.3319 -5.7413 -0.0012 13 1 8.2089 -5.3064 -0.4576 14 6 7.4057 -7.0089 0.5895 15 7 8.3927 -7.8126 0.2914 16 14 6.0936 -7.5513 1.8035 17 1 5.0577 -8.3424 1.0921 18 1 6.7143 -8.3871 2.8625 19 1 5.4659 -6.3554 2.4210 20 6 4.8719 -5.7117 0.0003 21 6 3.7043 -4.9815 0.0017 22 7 3.7237 -3.6623 0.0073 23 6 3.5337 -0.7821 0.0004 24 7 2.2686 -1.1462 0.0057 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8901 0.5138 28 1 1.8845 2.1190 -0.0009 29 1 4.8355 2.4297 0.0001 30 1 6.8952 1.1754 0.0001 31 1 6.9318 -1.2639 0.0012 32 1 7.0095 -3.0590 -0.0004 33 1 8.4439 -8.6905 0.7008 34 1 4.8421 -6.7914 -0.0001 35 1 2.7558 -5.4979 0.0018 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241465433.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:46 Heat of formation + Delta-G solvation = 104.354078 kcal Electronic energy + Delta-G solvation = -20165.059175 eV Core-core repulsion = 17128.423064 eV Total energy + Delta-G solvation = -3036.636111 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.01197 -40.38309 -37.97756 -35.96493 -33.77398 -33.46333 -33.11873 -31.00886 -29.10114 -28.17132 -27.69116 -24.73011 -23.51594 -22.91333 -22.26181 -21.00770 -19.35338 -18.01476 -17.82505 -17.51153 -16.55677 -16.52256 -16.40917 -16.16491 -15.64570 -14.90980 -14.65643 -14.63510 -14.41189 -14.03129 -13.86658 -13.59877 -13.42208 -12.86808 -12.82715 -12.62025 -12.43402 -12.29217 -12.19363 -11.72536 -11.30995 -11.14358 -11.06220 -10.17000 -9.94296 -9.85613 -9.34371 -9.00789 -8.19385 -6.72030 -0.48609 0.66428 0.75968 1.05570 1.22746 1.36294 1.43468 1.64324 1.65868 2.07569 2.59324 2.99542 3.32806 3.56543 3.59925 3.74702 4.10838 4.24306 4.29141 4.42792 4.46222 4.49770 4.51674 4.57958 4.69660 4.73323 4.79215 4.97212 4.97359 5.19324 5.25954 5.33964 5.60008 5.64184 5.71453 5.75321 5.99410 6.08427 6.18440 6.23552 6.51798 6.67563 6.86470 7.58685 8.06486 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025792 B = 0.004730 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.352053 B = 5918.714921 C = 6799.155517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.340 5.340 3 C 0.099 3.901 4 C -0.245 4.245 5 C -0.020 4.020 6 C -0.174 4.174 7 C -0.063 4.063 8 C -0.065 4.065 9 C 0.167 3.833 10 C -0.260 4.260 11 C 0.096 3.904 12 C -0.474 4.474 13 H 0.067 0.933 14 C 0.059 3.941 15 N -0.831 5.831 16 Si 0.964 3.036 17 H -0.252 1.252 18 H -0.269 1.269 19 H -0.267 1.267 20 C -0.301 4.301 21 C 0.113 3.887 22 N -0.553 5.553 23 C 0.095 3.905 24 N -0.322 5.322 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.134 0.866 28 H 0.242 0.758 29 H 0.167 0.833 30 H 0.154 0.846 31 H 0.130 0.870 32 H 0.123 0.877 33 H 0.299 0.701 34 H 0.112 0.888 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.507 19.063 1.301 22.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.114 5.114 3 C -0.057 4.057 4 C -0.255 4.255 5 C -0.040 4.040 6 C -0.193 4.193 7 C -0.086 4.086 8 C -0.069 4.069 9 C 0.036 3.964 10 C -0.282 4.282 11 C 0.089 3.911 12 C -0.505 4.505 13 H 0.086 0.914 14 C -0.159 4.159 15 N -0.456 5.456 16 Si 0.787 3.213 17 H -0.177 1.177 18 H -0.195 1.195 19 H -0.192 1.192 20 C -0.324 4.324 21 C -0.042 4.042 22 N -0.267 5.267 23 C -0.061 4.061 24 N -0.148 5.148 25 H 0.113 0.887 26 H 0.102 0.898 27 H 0.153 0.847 28 H 0.258 0.742 29 H 0.184 0.816 30 H 0.172 0.828 31 H 0.148 0.852 32 H 0.141 0.859 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.176 18.232 1.304 23.132 hybrid contribution 1.346 -1.041 0.233 1.717 sum -12.830 17.191 1.538 21.506 Atomic orbital electron populations 1.22417 0.71279 1.06556 1.05336 1.49243 1.09208 1.03928 1.48987 1.23460 0.89015 0.94919 0.98317 1.20112 0.95512 0.91798 1.18098 1.20614 0.88714 1.00815 0.93850 1.20602 0.99930 0.92174 1.06590 1.21314 0.96191 0.95408 0.95687 1.18844 0.90564 0.89166 1.08369 1.19718 0.89015 0.92840 0.94869 1.22107 0.97480 0.94324 1.14290 1.18026 0.93024 0.92486 0.87608 1.19458 0.96223 1.00501 1.34291 0.91440 1.26724 0.97789 0.94534 0.96822 1.69647 1.31350 1.08393 1.36218 0.85519 0.78414 0.78966 0.78399 1.17750 1.19506 1.19183 1.22065 0.93966 0.99634 1.16702 1.22422 0.97457 0.89987 0.94363 1.67749 1.29312 1.08303 1.21288 1.21959 0.91497 0.93843 0.98839 1.77912 1.02104 1.05017 1.29784 0.88707 0.89822 0.84746 0.74180 0.81576 0.82820 0.85202 0.85911 0.89029 0.87062 0.82814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 11.39 127.77 1.45 2.54 16 2 N -0.34 -8.48 3.95 -367.75 -1.45 -9.93 16 3 C 0.10 1.93 11.51 84.38 0.97 2.90 16 4 C -0.25 -6.85 6.34 -20.24 -0.13 -6.98 16 5 C -0.02 -0.45 10.03 22.35 0.22 -0.22 16 6 C -0.17 -4.46 9.83 21.90 0.22 -4.24 16 7 C -0.06 -2.21 9.37 22.47 0.21 -2.00 16 8 C -0.07 -2.81 6.06 -18.58 -0.11 -2.92 16 9 C 0.17 8.38 6.74 41.78 0.28 8.66 16 10 C -0.26 -13.36 9.26 23.11 0.21 -13.15 16 11 C 0.10 5.28 5.13 -21.12 -0.11 5.17 16 12 C -0.47 -27.17 9.63 23.52 0.23 -26.94 16 13 H 0.07 4.07 8.06 -2.91 -0.02 4.05 16 14 C 0.06 3.19 5.42 85.29 0.46 3.65 16 15 N -0.83 -45.02 13.92 21.84 0.30 -44.72 16 16 Si 0.96 43.88 24.54 68.60 1.68 45.57 16 17 H -0.25 -10.78 6.70 99.48 0.67 -10.11 16 18 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 19 H -0.27 -13.04 6.85 99.48 0.68 -12.36 16 20 C -0.30 -15.52 7.28 22.87 0.17 -15.36 16 21 C 0.11 5.52 11.15 84.55 0.94 6.47 16 22 N -0.55 -28.29 9.33 -185.47 -1.73 -30.02 16 23 C 0.09 3.75 7.26 43.65 0.32 4.06 16 24 N -0.32 -12.58 11.93 -45.34 -0.54 -13.12 16 25 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.13 0.51 8.13 -2.38 -0.02 0.49 16 28 H 0.24 1.40 8.06 -2.91 -0.02 1.38 16 29 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 30 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 31 H 0.13 4.38 6.15 -2.91 -0.02 4.36 16 32 H 0.12 5.80 6.21 -2.91 -0.02 5.79 16 33 H 0.30 14.41 8.29 -92.71 -0.77 13.64 16 34 H 0.11 5.50 4.76 -2.91 -0.01 5.49 16 35 H 0.15 6.37 8.06 -2.91 -0.02 6.35 16 Total: -1.00 -79.67 300.83 4.66 -75.01 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 1.06 Total: 15.58 kcal Atomic # 6 Polarization: -43.69 SS G_CDS: 5.34 Total: -38.36 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -3.42 Total: -97.80 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.68 Total: 45.57 kcal Total: -79.67 4.66 -75.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241465433.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.366 kcal (2) G-P(sol) polarization free energy of solvation -79.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds