Wall clock time and date at job start Tue Mar 31 2020 01:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34054 * 125.03536 * 2 1 4 4 C 1.38408 * 107.82963 * 179.90486 * 3 2 1 5 5 C 1.40906 * 134.86662 * 180.02562 * 4 3 2 6 6 C 1.35949 * 120.56213 * 180.33511 * 5 4 3 7 7 C 1.38845 * 122.57419 * 359.97438 * 6 5 4 8 8 C 1.38782 * 121.35065 * 0.02562 * 7 6 5 9 9 C 1.47303 * 120.72008 * 179.97438 * 8 7 6 10 10 C 1.40226 * 119.47308 * 359.74681 * 9 8 7 11 11 C 1.36409 * 119.45393 * 179.76313 * 10 9 8 12 12 C 1.41407 * 118.44052 * 0.49980 * 11 10 9 13 13 C 1.40878 * 120.53555 * 179.76527 * 12 11 10 14 14 H 1.07994 * 120.00218 * 155.55731 * 13 12 11 15 15 C 1.39903 * 119.99881 * 335.55663 * 13 12 11 16 16 N 1.30870 * 120.00181 * 342.92855 * 15 13 12 17 17 Si 1.86799 * 119.99927 * 162.92453 * 15 13 12 18 18 H 1.48497 * 109.47160 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46860 * 120.00173 * 17 15 13 20 20 H 1.48502 * 109.47188 * 240.00100 * 17 15 13 21 21 C 1.41059 * 118.93068 * 359.74211 * 12 11 10 22 22 N 1.31138 * 120.42274 * 0.02562 * 21 12 11 23 23 C 1.46629 * 118.55930 * 359.97438 * 8 7 6 24 24 N 1.31519 * 134.95353 * 179.97438 * 23 8 7 25 25 H 1.09003 * 109.47025 * 269.71430 * 1 2 3 26 26 H 1.08996 * 109.47362 * 29.71484 * 1 2 3 27 27 H 1.09003 * 109.46967 * 149.72578 * 1 2 3 28 28 H 1.08007 * 126.08460 * 0.04081 * 3 2 1 29 29 H 1.08001 * 119.71898 * 0.34655 * 5 4 3 30 30 H 1.07993 * 118.71422 * 180.02562 * 6 5 4 31 31 H 1.07998 * 119.32194 * 180.02562 * 7 6 5 32 32 H 1.08004 * 120.27470 * 0.02562 * 10 9 8 33 33 H 1.08006 * 120.78061 * 180.26171 * 11 10 9 34 34 H 0.96995 * 120.00040 * 180.02562 * 16 15 13 35 35 H 1.08002 * 119.78560 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2346 1.0976 0.0000 4 6 3.5567 0.6882 0.0022 5 6 4.8017 1.3482 0.0037 6 6 5.9607 0.6376 -0.0010 7 6 5.9865 -0.7506 -0.0070 8 6 4.8149 -1.4945 -0.0090 9 6 4.8585 -2.9669 -0.0159 10 6 6.0991 -3.6203 -0.0259 11 6 6.1390 -4.9838 -0.0273 12 6 4.9159 -5.6934 -0.0295 13 6 4.9056 -7.1021 -0.0360 14 1 4.0506 -7.6377 0.3493 15 6 6.0030 -7.8073 -0.5417 16 7 6.8781 -7.1990 -1.3013 17 14 6.2192 -9.6171 -0.1327 18 1 5.1017 -10.0650 0.7366 19 1 6.2190 -10.4115 -1.3873 20 1 7.5086 -9.8135 0.5774 21 6 3.7061 -4.9679 -0.0244 22 7 3.7183 -3.6566 -0.0184 23 6 3.5328 -0.7830 -0.0040 24 7 2.2687 -1.1460 -0.0045 25 1 -0.3633 -0.0051 1.0277 26 1 -0.3634 0.8925 -0.5094 27 1 -0.3633 -0.8875 -0.5181 28 1 1.8851 2.1196 0.0006 29 1 4.8354 2.4276 0.0089 30 1 6.8981 1.1739 0.0007 31 1 6.9378 -1.2619 -0.0102 32 1 7.0156 -3.0488 -0.0281 33 1 7.0827 -5.5092 -0.0307 34 1 7.6387 -7.6880 -1.6522 35 1 2.7639 -5.4958 -0.0264 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241465442.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:52 Heat of formation + Delta-G solvation = 122.938532 kcal Electronic energy + Delta-G solvation = -20037.375883 eV Core-core repulsion = 17001.545654 eV Total energy + Delta-G solvation = -3035.830229 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.66717 -38.36498 -36.49809 -34.26362 -32.35171 -31.80443 -30.62570 -29.67615 -28.06323 -26.94411 -25.31759 -22.68203 -22.14903 -21.32581 -20.65884 -19.37383 -17.51079 -16.78598 -16.39839 -15.71545 -15.33505 -15.26783 -14.58004 -14.27808 -13.89426 -13.20587 -13.02082 -12.88665 -12.77377 -12.63808 -12.32591 -11.89673 -11.66079 -11.49373 -11.26097 -11.09970 -10.91111 -10.83474 -10.66718 -9.93060 -9.77627 -9.66307 -9.41963 -8.30358 -8.27140 -7.95476 -7.78436 -7.03677 -6.66458 -4.50258 0.97870 2.27497 2.59898 2.71574 2.88037 2.95092 3.01020 3.04071 3.29619 3.74199 4.29080 4.54404 4.68957 4.82526 5.10130 5.15860 5.38353 5.41375 5.47651 5.70594 5.81421 5.87223 5.92391 6.11130 6.33493 6.53148 6.61146 6.70542 6.83753 6.92776 7.03374 7.10681 7.18599 7.21257 7.29839 7.46378 7.72232 7.80736 7.91723 8.23202 8.34018 8.52153 8.64677 9.67775 9.87921 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027717 B = 0.004176 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.980685 B = 6702.868588 C = 7628.765965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.345 5.345 3 C 0.040 3.960 4 C -0.195 4.195 5 C -0.097 4.097 6 C -0.120 4.120 7 C -0.147 4.147 8 C 0.062 3.938 9 C -0.011 4.011 10 C -0.117 4.117 11 C -0.148 4.148 12 C 0.069 3.931 13 C -0.429 4.429 14 H 0.087 0.913 15 C 0.071 3.929 16 N -0.774 5.774 17 Si 0.916 3.084 18 H -0.257 1.257 19 H -0.271 1.271 20 H -0.269 1.269 21 C -0.016 4.016 22 N -0.425 5.425 23 C 0.110 3.890 24 N -0.251 5.251 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.175 0.825 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.103 0.897 33 H 0.126 0.874 34 H 0.287 0.713 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.536 11.266 1.571 12.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.122 5.122 3 C -0.112 4.112 4 C -0.205 4.205 5 C -0.118 4.118 6 C -0.140 4.140 7 C -0.170 4.170 8 C 0.058 3.942 9 C -0.144 4.144 10 C -0.137 4.137 11 C -0.172 4.172 12 C 0.065 3.935 13 C -0.458 4.458 14 H 0.106 0.894 15 C -0.150 4.150 16 N -0.397 5.397 17 Si 0.739 3.261 18 H -0.180 1.180 19 H -0.196 1.196 20 H -0.194 1.194 21 C -0.182 4.182 22 N -0.131 5.131 23 C -0.048 4.048 24 N -0.075 5.075 25 H 0.095 0.905 26 H 0.104 0.896 27 H 0.111 0.889 28 H 0.192 0.808 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.142 0.858 32 H 0.121 0.879 33 H 0.144 0.856 34 H 0.098 0.902 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.118 10.672 1.420 12.383 hybrid contribution 1.457 -0.552 0.018 1.558 sum -4.661 10.120 1.438 11.234 Atomic orbital electron populations 1.21901 0.74528 1.04539 1.03515 1.48727 1.07249 1.04481 1.51717 1.22393 0.90619 0.92847 1.05372 1.19544 0.92959 0.93531 1.14441 1.19849 0.90147 0.98063 1.03739 1.20170 0.97167 0.93843 1.02787 1.20765 0.96768 0.93341 1.06145 1.18804 0.87781 0.90715 0.96868 1.18715 0.89227 0.90472 1.15972 1.21329 0.96517 0.95401 1.00446 1.21267 0.98950 0.92366 1.04651 1.18684 0.92270 0.94337 0.88258 1.19692 1.01911 0.91419 1.32728 0.89445 1.26095 0.94559 1.01853 0.92477 1.69831 1.10078 1.39070 1.20768 0.86123 0.79681 0.80781 0.79491 1.18020 1.19644 1.19380 1.22503 0.96669 0.88918 1.10158 1.67166 1.29418 1.09191 1.07366 1.21925 0.91828 0.91656 0.99354 1.77912 1.01601 1.02115 1.25905 0.90502 0.89599 0.88881 0.80821 0.87215 0.87022 0.85843 0.87877 0.85586 0.90236 0.85508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.95 11.39 59.85 0.68 1.63 16 2 N -0.35 -5.43 3.95 -67.55 -0.27 -5.69 16 3 C 0.04 0.57 11.52 -16.52 -0.19 0.38 16 4 C -0.19 -3.43 6.34 -105.21 -0.67 -4.09 16 5 C -0.10 -1.51 10.03 -39.39 -0.40 -1.91 16 6 C -0.12 -1.91 9.83 -40.18 -0.39 -2.31 16 7 C -0.15 -2.76 9.38 -39.16 -0.37 -3.13 16 8 C 0.06 1.39 6.06 -102.63 -0.62 0.77 16 9 C -0.01 -0.28 6.74 -82.81 -0.56 -0.83 16 10 C -0.12 -2.81 9.39 -39.49 -0.37 -3.18 16 11 C -0.15 -3.79 8.73 -39.04 -0.34 -4.13 16 12 C 0.07 1.83 5.59 -106.62 -0.60 1.24 16 13 C -0.43 -10.81 9.05 -37.96 -0.34 -11.15 16 14 H 0.09 2.08 7.90 -52.49 -0.41 1.67 16 15 C 0.07 1.67 5.17 -17.34 -0.09 1.58 16 16 N -0.77 -18.90 10.93 55.55 0.61 -18.29 16 17 Si 0.92 17.46 29.59 -169.99 -5.03 12.43 16 18 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 19 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 20 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 21 C -0.02 -0.40 10.97 -16.78 -0.18 -0.59 16 22 N -0.42 -11.19 9.30 -9.16 -0.09 -11.27 16 23 C 0.11 2.38 7.25 -81.00 -0.59 1.80 16 24 N -0.25 -5.36 11.90 34.34 0.41 -4.95 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.09 0.54 8.13 -51.93 -0.42 0.11 16 27 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.17 1.59 8.06 -52.48 -0.42 1.16 16 29 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 31 H 0.12 2.13 6.13 -52.49 -0.32 1.81 16 32 H 0.10 2.16 6.17 -52.48 -0.32 1.83 16 33 H 0.13 3.23 6.22 -52.48 -0.33 2.91 16 34 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 35 H 0.13 3.06 8.06 -52.49 -0.42 2.63 16 LS Contribution 305.80 15.07 4.61 4.61 Total: -1.00 -31.94 305.80 -8.26 -40.20 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -3.48 Total: 6.90 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -5.02 Total: -23.93 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.66 Total: -40.21 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.94 -8.26 -40.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241465442.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.138 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds