Wall clock time and date at job start Tue Mar 31 2020 01:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34054 * 125.03536 * 2 1 4 4 C 1.38408 * 107.82963 * 179.90486 * 3 2 1 5 5 C 1.40906 * 134.86662 * 180.02562 * 4 3 2 6 6 C 1.35949 * 120.56213 * 180.33511 * 5 4 3 7 7 C 1.38845 * 122.57419 * 359.97438 * 6 5 4 8 8 C 1.38782 * 121.35065 * 0.02562 * 7 6 5 9 9 C 1.47303 * 120.72008 * 179.97438 * 8 7 6 10 10 C 1.40226 * 119.47308 * 359.74681 * 9 8 7 11 11 C 1.36409 * 119.45393 * 179.76313 * 10 9 8 12 12 C 1.41407 * 118.44052 * 0.49980 * 11 10 9 13 13 C 1.40878 * 120.53555 * 179.76527 * 12 11 10 14 14 H 1.07994 * 120.00218 * 155.55731 * 13 12 11 15 15 C 1.39903 * 119.99881 * 335.55663 * 13 12 11 16 16 N 1.30870 * 120.00181 * 342.92855 * 15 13 12 17 17 Si 1.86799 * 119.99927 * 162.92453 * 15 13 12 18 18 H 1.48497 * 109.47160 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46860 * 120.00173 * 17 15 13 20 20 H 1.48502 * 109.47188 * 240.00100 * 17 15 13 21 21 C 1.41059 * 118.93068 * 359.74211 * 12 11 10 22 22 N 1.31138 * 120.42274 * 0.02562 * 21 12 11 23 23 C 1.46629 * 118.55930 * 359.97438 * 8 7 6 24 24 N 1.31519 * 134.95353 * 179.97438 * 23 8 7 25 25 H 1.09003 * 109.47025 * 269.71430 * 1 2 3 26 26 H 1.08996 * 109.47362 * 29.71484 * 1 2 3 27 27 H 1.09003 * 109.46967 * 149.72578 * 1 2 3 28 28 H 1.08007 * 126.08460 * 0.04081 * 3 2 1 29 29 H 1.08001 * 119.71898 * 0.34655 * 5 4 3 30 30 H 1.07993 * 118.71422 * 180.02562 * 6 5 4 31 31 H 1.07998 * 119.32194 * 180.02562 * 7 6 5 32 32 H 1.08004 * 120.27470 * 0.02562 * 10 9 8 33 33 H 1.08006 * 120.78061 * 180.26171 * 11 10 9 34 34 H 0.96995 * 120.00040 * 180.02562 * 16 15 13 35 35 H 1.08002 * 119.78560 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2346 1.0976 0.0000 4 6 3.5567 0.6882 0.0022 5 6 4.8017 1.3482 0.0037 6 6 5.9607 0.6376 -0.0010 7 6 5.9865 -0.7506 -0.0070 8 6 4.8149 -1.4945 -0.0090 9 6 4.8585 -2.9669 -0.0159 10 6 6.0991 -3.6203 -0.0259 11 6 6.1390 -4.9838 -0.0273 12 6 4.9159 -5.6934 -0.0295 13 6 4.9056 -7.1021 -0.0360 14 1 4.0506 -7.6377 0.3493 15 6 6.0030 -7.8073 -0.5417 16 7 6.8781 -7.1990 -1.3013 17 14 6.2192 -9.6171 -0.1327 18 1 5.1017 -10.0650 0.7366 19 1 6.2190 -10.4115 -1.3873 20 1 7.5086 -9.8135 0.5774 21 6 3.7061 -4.9679 -0.0244 22 7 3.7183 -3.6566 -0.0184 23 6 3.5328 -0.7830 -0.0040 24 7 2.2687 -1.1460 -0.0045 25 1 -0.3633 -0.0051 1.0277 26 1 -0.3634 0.8925 -0.5094 27 1 -0.3633 -0.8875 -0.5181 28 1 1.8851 2.1196 0.0006 29 1 4.8354 2.4276 0.0089 30 1 6.8981 1.1739 0.0007 31 1 6.9378 -1.2619 -0.0102 32 1 7.0156 -3.0488 -0.0281 33 1 7.0827 -5.5092 -0.0307 34 1 7.6387 -7.6880 -1.6522 35 1 2.7639 -5.4958 -0.0264 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241465442.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:49 Heat of formation + Delta-G solvation = 103.324709 kcal Electronic energy + Delta-G solvation = -20038.226402 eV Core-core repulsion = 17001.545654 eV Total energy + Delta-G solvation = -3036.680748 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -41.94012 -40.20750 -37.86149 -36.04951 -33.56114 -33.33237 -32.51020 -31.24015 -29.54605 -28.07609 -27.03326 -24.17776 -23.88222 -22.78125 -22.20264 -20.79037 -19.35904 -18.14546 -17.69806 -17.27165 -16.90859 -16.38121 -16.26124 -15.80159 -15.54094 -14.58868 -14.52177 -14.37362 -14.09537 -13.79088 -13.66338 -13.52520 -13.38574 -13.19313 -12.82942 -12.51095 -12.26889 -12.23128 -12.14097 -11.69253 -11.33248 -11.02043 -10.98535 -10.23358 -9.90653 -9.78048 -9.30041 -8.79256 -8.18303 -6.39729 -0.35458 0.75269 1.07741 1.14137 1.37293 1.43862 1.54184 1.67872 1.76603 2.15393 2.64634 3.10914 3.40802 3.72553 3.78564 3.90616 4.14097 4.30182 4.41750 4.43496 4.51192 4.56833 4.63264 4.68154 4.75653 4.87033 4.99072 5.01784 5.11792 5.27668 5.32799 5.64774 5.65147 5.75535 5.84886 5.96141 6.03723 6.11827 6.26927 6.43769 6.66027 6.74382 6.92454 7.76271 8.15626 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027717 B = 0.004176 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.980685 B = 6702.868588 C = 7628.765965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.342 5.342 3 C 0.087 3.913 4 C -0.236 4.236 5 C -0.053 4.053 6 C -0.156 4.156 7 C -0.108 4.108 8 C -0.019 4.019 9 C -0.009 4.009 10 C -0.128 4.128 11 C -0.160 4.160 12 C 0.042 3.958 13 C -0.466 4.466 14 H 0.088 0.912 15 C 0.034 3.966 16 N -0.809 5.809 17 Si 0.994 3.006 18 H -0.256 1.256 19 H -0.262 1.262 20 H -0.260 1.260 21 C -0.045 4.045 22 N -0.446 5.446 23 C 0.082 3.918 24 N -0.326 5.326 25 H 0.094 0.906 26 H 0.135 0.865 27 H 0.081 0.919 28 H 0.240 0.760 29 H 0.160 0.840 30 H 0.151 0.849 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.121 0.879 34 H 0.296 0.704 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.715 15.115 1.742 15.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.117 5.117 3 C -0.069 4.069 4 C -0.246 4.246 5 C -0.073 4.073 6 C -0.175 4.175 7 C -0.131 4.131 8 C -0.023 4.023 9 C -0.143 4.143 10 C -0.147 4.147 11 C -0.185 4.185 12 C 0.037 3.963 13 C -0.494 4.494 14 H 0.106 0.894 15 C -0.183 4.183 16 N -0.433 5.433 17 Si 0.813 3.187 18 H -0.179 1.179 19 H -0.187 1.187 20 H -0.184 1.184 21 C -0.209 4.209 22 N -0.153 5.153 23 C -0.073 4.073 24 N -0.152 5.152 25 H 0.112 0.888 26 H 0.153 0.847 27 H 0.099 0.901 28 H 0.256 0.744 29 H 0.178 0.822 30 H 0.169 0.831 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.139 0.861 34 H 0.107 0.893 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.336 14.491 1.589 15.895 hybrid contribution 1.350 -1.166 -0.043 1.784 sum -4.986 13.325 1.546 14.311 Atomic orbital electron populations 1.22387 0.71467 1.06423 1.05231 1.49214 1.09094 1.03897 1.49457 1.23428 0.89118 0.94749 0.99602 1.20110 0.95471 0.91782 1.17250 1.20490 0.88858 1.00430 0.97500 1.20541 0.99476 0.92462 1.05035 1.21156 0.95858 0.95071 1.00991 1.18910 0.90082 0.89463 1.03832 1.19372 0.88911 0.92526 1.13531 1.21601 0.97636 0.95098 1.00415 1.21325 0.98559 0.93160 1.05486 1.18939 0.92558 0.95329 0.89450 1.19887 1.03391 0.91331 1.34822 0.89435 1.26969 0.93479 1.06442 0.91453 1.69859 1.10789 1.41198 1.21437 0.84982 0.79713 0.74603 0.79399 1.17914 1.18696 1.18395 1.22634 0.96967 0.89406 1.11862 1.67210 1.30527 1.09121 1.08460 1.22119 0.91646 0.94007 0.99566 1.77825 1.02462 1.05246 1.29658 0.88785 0.84730 0.90054 0.74405 0.82240 0.83107 0.85177 0.85139 0.86090 0.89257 0.85375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.40 11.39 127.77 1.45 2.86 16 2 N -0.34 -9.90 3.95 -367.61 -1.45 -11.36 16 3 C 0.09 2.02 11.52 84.39 0.97 2.99 16 4 C -0.24 -7.51 6.34 -20.24 -0.13 -7.64 16 5 C -0.05 -1.37 10.03 22.39 0.22 -1.14 16 6 C -0.16 -4.40 9.83 21.88 0.22 -4.18 16 7 C -0.11 -3.96 9.38 22.55 0.21 -3.75 16 8 C -0.02 -0.88 6.06 -18.57 -0.11 -0.99 16 9 C -0.01 -0.45 6.74 41.80 0.28 -0.17 16 10 C -0.13 -6.50 9.39 22.33 0.21 -6.29 16 11 C -0.16 -8.79 8.73 22.62 0.20 -8.59 16 12 C 0.04 2.39 5.59 -21.16 -0.12 2.27 16 13 C -0.47 -25.12 9.05 23.32 0.21 -24.90 16 14 H 0.09 4.50 7.90 -2.91 -0.02 4.47 16 15 C 0.03 1.67 5.17 85.24 0.44 2.11 16 16 N -0.81 -41.18 10.93 21.82 0.24 -40.94 16 17 Si 0.99 36.72 29.59 68.60 2.03 38.75 16 18 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 19 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 20 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 21 C -0.04 -2.53 10.97 85.49 0.94 -1.59 16 22 N -0.45 -25.35 9.30 -182.90 -1.70 -27.05 16 23 C 0.08 3.59 7.25 43.72 0.32 3.91 16 24 N -0.33 -14.18 11.90 -45.26 -0.54 -14.72 16 25 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.13 0.94 8.13 -2.39 -0.02 0.92 16 27 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.24 2.28 8.06 -2.91 -0.02 2.26 16 29 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 31 H 0.13 4.40 6.13 -2.91 -0.02 4.38 16 32 H 0.13 5.65 6.17 -2.91 -0.02 5.63 16 33 H 0.12 6.61 6.22 -2.91 -0.02 6.59 16 34 H 0.30 13.35 8.30 -92.71 -0.77 12.58 16 35 H 0.13 6.87 8.06 -2.91 -0.02 6.84 16 Total: -1.00 -78.89 305.80 5.01 -73.88 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 1.12 Total: 26.53 kcal Atomic # 6 Polarization: -50.41 SS G_CDS: 5.31 Total: -45.10 kcal Atomic # 7 Polarization: -90.61 SS G_CDS: -3.46 Total: -94.06 kcal Atomic # 14 Polarization: 36.72 SS G_CDS: 2.03 Total: 38.75 kcal Total: -78.89 5.01 -73.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241465442.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.200 kcal (2) G-P(sol) polarization free energy of solvation -78.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds