Wall clock time and date at job start Tue Mar 31 2020 01:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34302 * 125.07402 * 2 1 4 4 C 1.37552 * 107.92729 * 179.97438 * 3 2 1 5 5 C 1.47107 * 106.65663 * 0.02562 * 4 3 2 6 6 C 1.41014 * 118.65245 * 180.02562 * 5 4 3 7 7 C 1.35900 * 120.61845 * 0.02562 * 6 5 4 8 8 C 1.38852 * 122.67800 * 359.97438 * 7 6 5 9 9 C 1.38853 * 121.24762 * 359.97286 * 8 7 6 10 10 C 1.47151 * 120.74973 * 179.97438 * 9 8 7 11 11 N 1.33002 * 120.33563 * 131.54245 * 10 9 8 12 12 C 1.31473 * 121.64072 * 180.02562 * 11 10 9 13 13 C 1.38864 * 122.18757 * 359.97438 * 12 11 10 14 14 C 1.36693 * 120.43580 * 0.02562 * 13 12 11 15 15 C 1.41293 * 118.37311 * 359.71788 * 14 13 12 16 16 C 1.40671 * 120.99127 * 180.28853 * 15 14 13 17 17 H 1.07995 * 120.00103 * 152.02195 * 16 15 14 18 18 C 1.39988 * 119.99834 * 332.02909 * 16 15 14 19 19 N 1.30820 * 120.00200 * 161.20041 * 18 16 15 20 20 Si 1.86797 * 119.99796 * 341.19392 * 18 16 15 21 21 H 1.48499 * 109.47262 * 91.09726 * 20 18 16 22 22 H 1.48500 * 109.47210 * 211.09446 * 20 18 16 23 23 H 1.48499 * 109.47444 * 331.09360 * 20 18 16 24 24 N 1.32157 * 106.67169 * 359.97438 * 5 4 3 25 25 H 1.08999 * 109.46903 * 269.99632 * 1 2 3 26 26 H 1.08995 * 109.47143 * 29.99434 * 1 2 3 27 27 H 1.08999 * 109.47158 * 149.99978 * 1 2 3 28 28 H 1.08001 * 126.03357 * 359.97438 * 3 2 1 29 29 H 1.08002 * 119.69208 * 179.97438 * 6 5 4 30 30 H 1.08009 * 118.66335 * 179.70124 * 7 6 5 31 31 H 1.07997 * 119.37911 * 179.97438 * 8 7 6 32 32 H 1.07997 * 118.90879 * 179.97438 * 12 11 10 33 33 H 1.07995 * 119.78208 * 180.02562 * 13 12 11 34 34 H 1.08001 * 120.81479 * 179.97438 * 14 13 12 35 35 H 0.96996 * 120.00355 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2368 1.0991 0.0000 4 6 3.5512 0.6936 0.0006 5 6 3.5386 -0.7774 0.0003 6 6 4.7702 -1.4641 0.0014 7 6 5.9443 -0.7797 0.0031 8 6 6.0034 0.6075 0.0034 9 6 4.8480 1.3777 0.0014 10 6 4.9234 2.8473 0.0023 11 7 4.1994 3.5576 -0.8580 12 6 4.2473 4.8713 -0.8800 13 6 5.0517 5.5967 -0.0111 14 6 5.8322 4.9546 0.9092 15 6 5.7928 3.5429 0.9549 16 6 6.5688 2.8264 1.8840 17 1 6.2368 1.8600 2.2335 18 6 7.7713 3.3660 2.3556 19 7 8.3048 2.9095 3.4594 20 14 8.6142 4.7380 1.4087 21 1 8.1413 6.0516 1.9145 22 1 10.0841 4.6364 1.5935 23 1 8.2873 4.6166 -0.0348 24 7 2.2694 -1.1457 0.0002 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3633 0.8900 -0.5137 27 1 -0.3633 -0.8900 -0.5138 28 1 1.8871 2.1210 -0.0004 29 1 4.7806 -2.5441 0.0016 30 1 6.8691 -1.3376 0.0088 31 1 6.9661 1.0968 0.0053 32 1 3.6409 5.4039 -1.5975 33 1 5.0608 6.6754 -0.0629 34 1 6.4605 5.5127 1.5875 35 1 9.1381 3.2832 3.7860 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241577931.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:00 Heat of formation + Delta-G solvation = 125.445111 kcal Electronic energy + Delta-G solvation = -20684.661750 eV Core-core repulsion = 17648.940214 eV Total energy + Delta-G solvation = -3035.721536 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.59506 -38.44772 -36.40291 -34.18243 -32.50973 -31.79036 -31.34822 -29.61718 -27.84671 -26.92401 -25.53773 -22.98492 -21.80655 -21.35676 -21.00676 -19.22524 -17.63077 -16.70125 -16.49262 -15.87666 -15.32763 -15.20808 -14.67879 -14.64834 -13.66388 -13.48881 -13.25727 -12.82058 -12.81554 -12.57899 -12.42256 -12.24122 -12.04414 -11.50135 -11.21721 -11.00050 -10.90577 -10.78557 -10.39806 -10.13632 -9.74377 -9.62490 -9.54084 -8.58383 -8.22396 -8.06645 -7.74195 -7.25139 -6.80937 -4.68526 1.07672 2.20765 2.53571 2.61161 2.74205 2.93409 2.99626 3.10903 3.15783 3.74849 4.34176 4.51121 4.58740 5.04036 5.14442 5.23967 5.26897 5.37256 5.46527 5.72374 5.83060 5.91894 6.01938 6.02755 6.18384 6.25407 6.38691 6.47800 6.70888 6.77610 6.90826 7.14483 7.22574 7.24684 7.30299 7.42643 7.50158 7.61451 7.72661 8.06082 8.15626 8.34492 8.45810 9.33788 9.73055 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019444 B = 0.006393 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.721892 B = 4378.963822 C = 5310.454482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.345 5.345 3 C 0.091 3.909 4 C -0.185 4.185 5 C 0.108 3.892 6 C -0.142 4.142 7 C -0.054 4.054 8 C -0.155 4.155 9 C 0.104 3.896 10 C 0.019 3.981 11 N -0.434 5.434 12 C -0.056 4.056 13 C -0.111 4.111 14 C -0.222 4.222 15 C 0.066 3.934 16 C -0.404 4.404 17 H 0.106 0.894 18 C 0.082 3.918 19 N -0.778 5.778 20 Si 0.914 3.086 21 H -0.266 1.266 22 H -0.286 1.286 23 H -0.244 1.244 24 N -0.329 5.329 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.179 0.821 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.123 0.877 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.365 -1.248 -3.882 7.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.121 5.121 3 C -0.063 4.063 4 C -0.195 4.195 5 C -0.045 4.045 6 C -0.163 4.163 7 C -0.077 4.077 8 C -0.175 4.175 9 C 0.101 3.899 10 C -0.123 4.123 11 N -0.141 5.141 12 C -0.214 4.214 13 C -0.131 4.131 14 C -0.247 4.247 15 C 0.061 3.939 16 C -0.431 4.431 17 H 0.124 0.876 18 C -0.141 4.141 19 N -0.399 5.399 20 Si 0.740 3.260 21 H -0.192 1.192 22 H -0.213 1.213 23 H -0.167 1.167 24 N -0.157 5.157 25 H 0.094 0.906 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.196 0.804 29 H 0.134 0.866 30 H 0.137 0.863 31 H 0.147 0.853 32 H 0.140 0.860 33 H 0.119 0.881 34 H 0.129 0.871 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.753 -2.721 -4.240 9.246 hybrid contribution 1.423 1.983 0.501 2.492 sum -6.331 -0.738 -3.738 7.389 Atomic orbital electron populations 1.21898 0.74537 1.04490 1.03463 1.48399 1.06879 1.04152 1.52641 1.22396 0.90740 0.92605 1.00517 1.20485 0.92471 0.92643 1.13869 1.20843 0.92164 0.92845 0.98668 1.19583 0.88560 0.98499 1.09682 1.20417 0.96874 0.94319 0.96065 1.20931 0.98099 0.92670 1.05843 1.18650 0.89325 0.89766 0.92204 1.20475 1.03581 0.90757 0.97504 1.67164 1.18450 1.08101 1.20417 1.21501 1.06133 0.89646 1.04097 1.21245 0.96766 0.98987 0.96067 1.21111 1.05627 0.94390 1.03580 1.19421 0.92190 0.91530 0.90782 1.19559 1.02385 1.05491 1.15639 0.87648 1.26320 0.97516 0.96766 0.93511 1.69676 1.17326 1.36925 1.15969 0.86303 0.76945 0.80075 0.82707 1.19189 1.21276 1.16735 1.77584 1.00947 1.04544 1.32606 0.90563 0.89346 0.89220 0.80423 0.86602 0.86319 0.85256 0.85975 0.88090 0.87118 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.01 11.39 59.85 0.68 1.69 16 2 N -0.34 -5.69 3.96 -67.72 -0.27 -5.95 16 3 C 0.09 1.65 11.44 -16.72 -0.19 1.46 16 4 C -0.18 -3.88 6.31 -103.17 -0.65 -4.53 16 5 C 0.11 2.19 7.49 -83.08 -0.62 1.57 16 6 C -0.14 -2.59 10.03 -39.37 -0.39 -2.98 16 7 C -0.05 -0.98 9.82 -40.19 -0.39 -1.37 16 8 C -0.15 -3.21 8.08 -39.13 -0.32 -3.53 16 9 C 0.10 2.32 5.36 -102.67 -0.55 1.77 16 10 C 0.02 0.44 6.52 -80.40 -0.52 -0.08 16 11 N -0.43 -9.84 10.28 -8.10 -0.08 -9.92 16 12 C -0.06 -1.17 11.11 -17.47 -0.19 -1.36 16 13 C -0.11 -2.28 9.98 -39.91 -0.40 -2.68 16 14 C -0.22 -5.07 7.37 -38.98 -0.29 -5.35 16 15 C 0.07 1.61 5.29 -104.48 -0.55 1.06 16 16 C -0.40 -10.05 7.70 -38.01 -0.29 -10.34 16 17 H 0.11 2.80 7.02 -52.49 -0.37 2.43 16 18 C 0.08 1.96 5.42 -17.33 -0.09 1.86 16 19 N -0.78 -18.85 13.93 55.55 0.77 -18.07 16 20 Si 0.91 19.13 24.56 -169.99 -4.17 14.95 16 21 H -0.27 -5.39 6.46 56.52 0.37 -5.02 16 22 H -0.29 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.24 -5.33 7.02 56.52 0.40 -4.93 16 24 N -0.33 -6.34 12.55 33.24 0.42 -5.93 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.09 0.69 8.13 -51.93 -0.42 0.26 16 27 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.18 2.93 8.06 -52.49 -0.42 2.50 16 29 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 30 H 0.12 1.75 8.06 -52.48 -0.42 1.32 16 31 H 0.13 2.72 7.26 -52.49 -0.38 2.34 16 32 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 33 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.11 2.46 4.51 -52.49 -0.24 2.22 16 35 H 0.29 6.35 8.30 -40.82 -0.34 6.01 16 LS Contribution 300.98 15.07 4.54 4.54 Total: -1.00 -29.15 300.98 -7.13 -36.28 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -3.54 Total: 6.94 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -4.78 Total: -22.83 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.84 Total: -39.88 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.17 Total: 14.95 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.15 -7.13 -36.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241577931.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.722 kcal (2) G-P(sol) polarization free energy of solvation -29.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds