Wall clock time and date at job start Tue Mar 31 2020 01:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34336 * 125.07244 * 2 1 4 4 C 1.37555 * 107.91847 * 179.97438 * 3 2 1 5 5 C 1.47112 * 106.66083 * 0.02562 * 4 3 2 6 6 C 1.41004 * 118.65756 * 179.97438 * 5 4 3 7 7 C 1.35980 * 120.62769 * 0.02825 * 6 5 4 8 8 C 1.38772 * 122.67522 * 359.97438 * 7 6 5 9 9 C 1.38994 * 121.23817 * 359.95713 * 8 7 6 10 10 C 1.47103 * 120.75180 * 180.02562 * 9 8 7 11 11 C 1.40176 * 120.93453 * 65.01839 * 10 9 8 12 12 C 1.38062 * 118.42590 * 180.02562 * 11 10 9 13 13 C 1.38978 * 120.36569 * 0.02562 * 12 11 10 14 14 N 1.31153 * 122.05555 * 0.02562 * 13 12 11 15 15 C 1.33899 * 121.59044 * 359.63936 * 14 13 12 16 16 C 1.40526 * 120.28653 * 180.33685 * 15 14 13 17 17 H 1.07998 * 120.00009 * 180.29910 * 16 15 14 18 18 C 1.40014 * 119.99744 * 0.30081 * 16 15 14 19 19 N 1.30783 * 119.99906 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00108 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47126 * 89.99992 * 20 18 16 22 22 H 1.48505 * 109.47488 * 210.00337 * 20 18 16 23 23 H 1.48507 * 109.47332 * 330.00365 * 20 18 16 24 24 N 1.32167 * 106.67479 * 359.97438 * 5 4 3 25 25 H 1.09003 * 109.47524 * 89.99378 * 1 2 3 26 26 H 1.08997 * 109.47507 * 209.99609 * 1 2 3 27 27 H 1.09006 * 109.47228 * 329.99696 * 1 2 3 28 28 H 1.07993 * 126.04197 * 0.25141 * 3 2 1 29 29 H 1.07992 * 119.68247 * 179.97438 * 6 5 4 30 30 H 1.08007 * 118.66312 * 179.97438 * 7 6 5 31 31 H 1.08002 * 119.38091 * 179.97438 * 8 7 6 32 32 H 1.07997 * 120.78833 * 359.97438 * 11 10 9 33 33 H 1.07995 * 119.82080 * 179.97438 * 12 11 10 34 34 H 1.07997 * 118.97199 * 179.97438 * 13 12 11 35 35 H 0.96994 * 119.99847 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2369 1.0994 0.0000 4 6 3.5513 0.6937 0.0006 5 6 3.5386 -0.7773 0.0003 6 6 4.7701 -1.4642 0.0003 7 6 5.9451 -0.7797 0.0010 8 6 6.0045 0.6067 0.0014 9 6 4.8480 1.3778 0.0000 10 6 4.9234 2.8468 -0.0002 11 6 5.4686 3.5402 -1.0896 12 6 5.5143 4.9190 -1.0348 13 6 5.0292 5.5943 0.0788 14 7 4.5167 4.9624 1.1075 15 6 4.4268 3.6268 1.1365 16 6 3.8662 2.9782 2.2500 17 1 3.8004 1.9004 2.2706 18 6 3.3931 3.7294 3.3327 19 7 3.4723 5.0345 3.3075 20 14 2.6473 2.8674 4.8125 21 1 3.7136 2.5727 5.8031 22 1 1.6239 3.7463 5.4336 23 1 2.0113 1.5979 4.3775 24 7 2.2693 -1.1457 0.0002 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3634 0.8900 0.5139 28 1 1.8874 2.1212 0.0038 29 1 4.7801 -2.5441 0.0005 30 1 6.8697 -1.3379 0.0014 31 1 6.9674 1.0958 0.0024 32 1 5.8448 3.0085 -1.9511 33 1 5.9301 5.4759 -1.8615 34 1 5.0765 6.6731 0.0980 35 1 3.1442 5.5549 4.0573 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241582430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:54 Heat of formation + Delta-G solvation = 130.750427 kcal Electronic energy + Delta-G solvation = -20895.673163 eV Core-core repulsion = 17860.181683 eV Total energy + Delta-G solvation = -3035.491480 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.56930 -38.01496 -36.39650 -33.80023 -32.57486 -31.78311 -30.42126 -29.25546 -27.83670 -26.79260 -25.62433 -22.81161 -21.63875 -21.17541 -21.05796 -18.94170 -17.55283 -16.64508 -16.31357 -15.66215 -15.21784 -15.14663 -14.51074 -14.22218 -13.88501 -13.46055 -12.85741 -12.76686 -12.64148 -12.54472 -12.10967 -11.92881 -11.34469 -11.31591 -11.21976 -11.08553 -10.87781 -10.82488 -10.56803 -10.18948 -9.72571 -9.53905 -9.34016 -8.30237 -7.98342 -7.68316 -7.59048 -6.83477 -6.54022 -4.64682 1.15926 2.48108 2.58262 2.78236 2.85572 2.98937 3.03350 3.09386 3.17487 3.81781 4.47241 4.61213 4.63664 5.13370 5.20522 5.32011 5.44376 5.64209 5.65875 5.79462 5.94225 6.03079 6.05800 6.13423 6.20563 6.35856 6.52244 6.71899 6.74874 6.93061 7.07044 7.11979 7.29198 7.32192 7.35245 7.48229 7.57451 7.73056 7.94890 8.14357 8.18804 8.48180 8.81402 9.97001 10.12759 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.012200 B = 0.008576 C = 0.006449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.610489 B = 3263.997639 C = 4340.745925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.344 5.344 3 C 0.104 3.896 4 C -0.192 4.192 5 C 0.108 3.892 6 C -0.147 4.147 7 C -0.053 4.053 8 C -0.196 4.196 9 C 0.124 3.876 10 C -0.251 4.251 11 C -0.026 4.026 12 C -0.327 4.327 13 C 0.137 3.863 14 N -0.489 5.489 15 C 0.273 3.727 16 C -0.404 4.404 17 H 0.090 0.910 18 C 0.068 3.932 19 N -0.703 5.703 20 Si 0.902 3.098 21 H -0.265 1.265 22 H -0.274 1.274 23 H -0.260 1.260 24 N -0.331 5.331 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.182 0.818 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.283 -5.494 -3.499 7.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.119 5.119 3 C -0.050 4.050 4 C -0.202 4.202 5 C -0.045 4.045 6 C -0.169 4.169 7 C -0.076 4.076 8 C -0.216 4.216 9 C 0.121 3.879 10 C -0.257 4.257 11 C -0.050 4.050 12 C -0.351 4.351 13 C -0.031 4.031 14 N -0.201 5.201 15 C 0.149 3.851 16 C -0.433 4.433 17 H 0.108 0.892 18 C -0.159 4.159 19 N -0.323 5.323 20 Si 0.726 3.274 21 H -0.190 1.190 22 H -0.199 1.199 23 H -0.184 1.184 24 N -0.159 5.159 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.199 0.801 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.133 0.867 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.708 -5.879 -2.608 7.970 hybrid contribution 0.496 0.026 -0.074 0.502 sum -4.212 -5.853 -2.682 7.694 Atomic orbital electron populations 1.21921 0.74506 1.04707 1.03372 1.48428 1.06933 1.04158 1.52382 1.22540 0.90762 0.92746 0.98953 1.20529 0.92647 0.92429 1.14546 1.20853 0.92153 0.93013 0.98497 1.19538 0.88624 0.98365 1.10344 1.20343 0.96686 0.94301 0.96225 1.20862 0.97408 0.92876 1.10434 1.19087 0.88973 0.91559 0.88324 1.20331 1.15679 0.90481 0.99164 1.20849 0.94828 0.93809 0.95519 1.21025 1.17383 0.94539 1.02124 1.22488 0.92398 0.98686 0.89508 1.68820 1.18764 1.08621 1.23876 1.19647 0.88193 0.87257 0.90025 1.19588 1.30385 0.94979 0.98374 0.89243 1.26131 0.95170 0.94777 0.99859 1.70151 1.27814 1.05871 1.28480 0.86380 0.79610 0.80342 0.81075 1.18998 1.19886 1.18422 1.77580 1.00927 1.04653 1.32721 0.90578 0.89233 0.89150 0.80119 0.86789 0.86743 0.86600 0.88532 0.88867 0.86651 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.09 11.39 59.85 0.68 1.77 16 2 N -0.34 -5.91 3.96 -67.71 -0.27 -6.18 16 3 C 0.10 1.97 11.18 -16.71 -0.19 1.78 16 4 C -0.19 -4.02 5.19 -103.17 -0.54 -4.55 16 5 C 0.11 2.19 7.49 -83.08 -0.62 1.56 16 6 C -0.15 -2.63 10.03 -39.34 -0.39 -3.02 16 7 C -0.05 -0.90 9.82 -40.19 -0.39 -1.29 16 8 C -0.20 -3.78 9.71 -39.10 -0.38 -4.16 16 9 C 0.12 2.67 4.70 -102.65 -0.48 2.19 16 10 C -0.25 -5.85 5.55 -102.24 -0.57 -6.42 16 11 C -0.03 -0.57 9.91 -38.92 -0.39 -0.96 16 12 C -0.33 -7.06 10.05 -39.37 -0.40 -7.46 16 13 C 0.14 3.17 11.12 -17.57 -0.20 2.98 16 14 N -0.49 -12.81 7.89 -9.71 -0.08 -12.88 16 15 C 0.27 7.01 6.72 -82.77 -0.56 6.45 16 16 C -0.40 -10.21 8.44 -38.05 -0.32 -10.53 16 17 H 0.09 2.27 6.21 -52.49 -0.33 1.94 16 18 C 0.07 1.64 5.49 -17.33 -0.10 1.54 16 19 N -0.70 -17.69 11.48 55.55 0.64 -17.05 16 20 Si 0.90 18.19 29.56 -169.99 -5.02 13.16 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 24 N -0.33 -6.48 12.55 33.24 0.42 -6.06 16 25 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.09 0.85 8.13 -51.93 -0.42 0.43 16 28 H 0.18 3.25 8.06 -52.49 -0.42 2.83 16 29 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 30 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 31 H 0.12 2.12 8.06 -52.49 -0.42 1.69 16 32 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 33 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 35 H 0.28 6.28 8.29 -40.82 -0.34 5.95 16 LS Contribution 308.87 15.07 4.65 4.65 Total: -1.00 -30.24 308.87 -8.18 -38.41 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -3.69 Total: 6.06 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -4.83 Total: -20.11 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.71 Total: -42.17 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.02 Total: 13.16 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.24 -8.18 -38.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241582430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.165 kcal (2) G-P(sol) polarization free energy of solvation -30.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds