Wall clock time and date at job start Tue Mar 31 2020 01:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34336 * 125.07244 * 2 1 4 4 C 1.37555 * 107.91847 * 179.97438 * 3 2 1 5 5 C 1.47112 * 106.66083 * 0.02562 * 4 3 2 6 6 C 1.41004 * 118.65756 * 179.97438 * 5 4 3 7 7 C 1.35980 * 120.62769 * 0.02825 * 6 5 4 8 8 C 1.38772 * 122.67522 * 359.97438 * 7 6 5 9 9 C 1.38994 * 121.23817 * 359.95713 * 8 7 6 10 10 C 1.47103 * 120.75180 * 180.02562 * 9 8 7 11 11 C 1.40176 * 120.93453 * 65.01839 * 10 9 8 12 12 C 1.38062 * 118.42590 * 180.02562 * 11 10 9 13 13 C 1.38978 * 120.36569 * 0.02562 * 12 11 10 14 14 N 1.31153 * 122.05555 * 0.02562 * 13 12 11 15 15 C 1.33899 * 121.59044 * 359.63936 * 14 13 12 16 16 C 1.40526 * 120.28653 * 180.33685 * 15 14 13 17 17 H 1.07998 * 120.00009 * 180.29910 * 16 15 14 18 18 C 1.40014 * 119.99744 * 0.30081 * 16 15 14 19 19 N 1.30783 * 119.99906 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00108 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47126 * 89.99992 * 20 18 16 22 22 H 1.48505 * 109.47488 * 210.00337 * 20 18 16 23 23 H 1.48507 * 109.47332 * 330.00365 * 20 18 16 24 24 N 1.32167 * 106.67479 * 359.97438 * 5 4 3 25 25 H 1.09003 * 109.47524 * 89.99378 * 1 2 3 26 26 H 1.08997 * 109.47507 * 209.99609 * 1 2 3 27 27 H 1.09006 * 109.47228 * 329.99696 * 1 2 3 28 28 H 1.07993 * 126.04197 * 0.25141 * 3 2 1 29 29 H 1.07992 * 119.68247 * 179.97438 * 6 5 4 30 30 H 1.08007 * 118.66312 * 179.97438 * 7 6 5 31 31 H 1.08002 * 119.38091 * 179.97438 * 8 7 6 32 32 H 1.07997 * 120.78833 * 359.97438 * 11 10 9 33 33 H 1.07995 * 119.82080 * 179.97438 * 12 11 10 34 34 H 1.07997 * 118.97199 * 179.97438 * 13 12 11 35 35 H 0.96994 * 119.99847 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2369 1.0994 0.0000 4 6 3.5513 0.6937 0.0006 5 6 3.5386 -0.7773 0.0003 6 6 4.7701 -1.4642 0.0003 7 6 5.9451 -0.7797 0.0010 8 6 6.0045 0.6067 0.0014 9 6 4.8480 1.3778 0.0000 10 6 4.9234 2.8468 -0.0002 11 6 5.4686 3.5402 -1.0896 12 6 5.5143 4.9190 -1.0348 13 6 5.0292 5.5943 0.0788 14 7 4.5167 4.9624 1.1075 15 6 4.4268 3.6268 1.1365 16 6 3.8662 2.9782 2.2500 17 1 3.8004 1.9004 2.2706 18 6 3.3931 3.7294 3.3327 19 7 3.4723 5.0345 3.3075 20 14 2.6473 2.8674 4.8125 21 1 3.7136 2.5727 5.8031 22 1 1.6239 3.7463 5.4336 23 1 2.0113 1.5979 4.3775 24 7 2.2693 -1.1457 0.0002 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3634 0.8900 0.5139 28 1 1.8874 2.1212 0.0038 29 1 4.7801 -2.5441 0.0005 30 1 6.8697 -1.3379 0.0014 31 1 6.9674 1.0958 0.0024 32 1 5.8448 3.0085 -1.9511 33 1 5.9301 5.4759 -1.8615 34 1 5.0765 6.6731 0.0980 35 1 3.1442 5.5549 4.0573 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241582430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:53 Heat of formation + Delta-G solvation = 114.654967 kcal Electronic energy + Delta-G solvation = -20896.371114 eV Core-core repulsion = 17860.181683 eV Total energy + Delta-G solvation = -3036.189431 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.98089 -39.76438 -37.82954 -35.59180 -34.06532 -33.13342 -32.18675 -30.83140 -29.37892 -28.07845 -27.35019 -24.32674 -23.29819 -22.73497 -22.56055 -20.48431 -19.36425 -18.00470 -17.77664 -17.33990 -16.64588 -16.41668 -16.14049 -15.98238 -15.44572 -14.88656 -14.43571 -13.98848 -13.95384 -13.86770 -13.69309 -13.57774 -12.99591 -12.94071 -12.80280 -12.59170 -12.46270 -12.22013 -12.14066 -11.83684 -11.29653 -11.21635 -10.87019 -10.06777 -9.54335 -9.40047 -9.28544 -8.44026 -8.22394 -6.49084 -0.28286 0.79237 1.06674 1.16923 1.34362 1.45343 1.49847 1.56322 1.59025 2.15350 2.81032 3.00949 3.35325 3.79608 3.90393 4.15361 4.24366 4.32287 4.37354 4.39263 4.43846 4.55130 4.60769 4.63738 4.73266 4.85133 4.96852 4.97793 5.16040 5.31738 5.44921 5.62974 5.68072 5.79042 5.86549 5.97510 6.01577 6.13942 6.18258 6.31222 6.67723 6.74233 6.99345 8.18133 8.36401 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.012200 B = 0.008576 C = 0.006449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.610489 B = 3263.997639 C = 4340.745925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.334 5.334 3 C 0.094 3.906 4 C -0.214 4.214 5 C 0.085 3.915 6 C -0.146 4.146 7 C -0.053 4.053 8 C -0.191 4.191 9 C 0.087 3.913 10 C -0.248 4.248 11 C -0.038 4.038 12 C -0.317 4.317 13 C 0.114 3.886 14 N -0.524 5.524 15 C 0.248 3.752 16 C -0.426 4.426 17 H 0.080 0.920 18 C 0.032 3.968 19 N -0.740 5.740 20 Si 0.969 3.031 21 H -0.264 1.264 22 H -0.260 1.260 23 H -0.265 1.265 24 N -0.345 5.345 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.182 0.818 29 H 0.140 0.860 30 H 0.156 0.844 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.135 0.865 35 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.419 -6.904 -3.890 8.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.109 5.109 3 C -0.061 4.061 4 C -0.224 4.224 5 C -0.067 4.067 6 C -0.167 4.167 7 C -0.075 4.075 8 C -0.211 4.211 9 C 0.084 3.916 10 C -0.253 4.253 11 C -0.062 4.062 12 C -0.340 4.340 13 C -0.051 4.051 14 N -0.237 5.237 15 C 0.123 3.877 16 C -0.456 4.456 17 H 0.098 0.902 18 C -0.192 4.192 19 N -0.361 5.361 20 Si 0.790 3.210 21 H -0.189 1.189 22 H -0.184 1.184 23 H -0.189 1.189 24 N -0.173 5.173 25 H 0.119 0.881 26 H 0.121 0.879 27 H 0.128 0.872 28 H 0.199 0.801 29 H 0.158 0.842 30 H 0.174 0.826 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.152 0.848 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.850 -7.278 -3.026 9.255 hybrid contribution 0.549 0.414 -0.100 0.695 sum -4.301 -6.864 -3.126 8.682 Atomic orbital electron populations 1.22411 0.71331 1.06378 1.05520 1.48829 1.08656 1.03008 1.50417 1.22566 0.90826 0.93238 0.99463 1.20726 0.93093 0.93143 1.15457 1.21280 0.93123 0.92949 0.99372 1.19967 0.88038 0.99768 1.08896 1.20678 0.98196 0.93367 0.95224 1.21121 0.96935 0.94148 1.08887 1.19163 0.90253 0.90905 0.91327 1.20562 1.14422 0.91719 0.98628 1.21194 0.94846 0.94178 0.95935 1.21346 1.15754 0.94749 1.02187 1.22893 0.92685 0.99795 0.89724 1.68754 1.20132 1.09279 1.25502 1.19984 0.88953 0.87618 0.91140 1.19613 1.32057 0.94560 0.99405 0.90178 1.26824 0.95134 0.95238 1.01960 1.70214 1.29151 1.07084 1.29646 0.85403 0.78930 0.79055 0.77662 1.18929 1.18358 1.18917 1.77483 1.01025 1.05797 1.33006 0.88135 0.87866 0.87240 0.80080 0.84205 0.82639 0.86014 0.86207 0.85860 0.84791 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.71 11.39 127.77 1.46 3.17 16 2 N -0.33 -11.16 3.96 -368.14 -1.46 -12.62 16 3 C 0.09 3.60 11.18 84.15 0.94 4.54 16 4 C -0.21 -9.01 5.19 -18.93 -0.10 -9.10 16 5 C 0.09 3.37 7.49 42.10 0.32 3.68 16 6 C -0.15 -4.89 10.03 22.42 0.22 -4.66 16 7 C -0.05 -1.65 9.82 21.87 0.21 -1.44 16 8 C -0.19 -7.18 9.71 22.58 0.22 -6.96 16 9 C 0.09 3.75 4.70 -18.59 -0.09 3.67 16 10 C -0.25 -11.70 5.55 -18.32 -0.10 -11.80 16 11 C -0.04 -1.62 9.91 22.70 0.22 -1.40 16 12 C -0.32 -13.38 10.05 22.41 0.23 -13.16 16 13 C 0.11 5.33 11.12 84.97 0.94 6.28 16 14 N -0.52 -28.12 7.89 -184.64 -1.46 -29.58 16 15 C 0.25 13.08 6.72 41.55 0.28 13.36 16 16 C -0.43 -22.22 8.44 23.26 0.20 -22.02 16 17 H 0.08 4.20 6.21 -2.91 -0.02 4.18 16 18 C 0.03 1.59 5.49 85.28 0.47 2.05 16 19 N -0.74 -38.14 11.48 21.84 0.25 -37.89 16 20 Si 0.97 37.80 29.56 68.60 2.03 39.83 16 21 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 22 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 23 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 24 N -0.34 -13.09 12.55 -48.76 -0.61 -13.71 16 25 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.11 1.85 8.13 -2.38 -0.02 1.83 16 28 H 0.18 6.73 8.06 -2.91 -0.02 6.71 16 29 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 30 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 31 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 32 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 33 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 34 H 0.13 5.52 8.06 -2.91 -0.02 5.50 16 35 H 0.28 13.11 8.29 -92.71 -0.77 12.35 16 Total: -1.00 -66.40 308.87 5.28 -61.11 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 1.11 Total: 26.64 kcal Atomic # 6 Polarization: -39.21 SS G_CDS: 5.42 Total: -33.79 kcal Atomic # 7 Polarization: -90.52 SS G_CDS: -3.28 Total: -93.80 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal Total: -66.40 5.28 -61.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241582430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.769 kcal (2) G-P(sol) polarization free energy of solvation -66.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds