Wall clock time and date at job start Tue Mar 31 2020 01:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34323 * 125.07439 * 2 1 4 4 C 1.37557 * 107.92210 * 179.97438 * 3 2 1 5 5 C 1.47107 * 106.66013 * 359.97438 * 4 3 2 6 6 C 1.41005 * 118.66030 * 179.97438 * 5 4 3 7 7 C 1.35984 * 120.62579 * 0.02562 * 6 5 4 8 8 C 1.38784 * 122.66867 * 0.02562 * 7 6 5 9 9 C 1.38974 * 121.24260 * 359.96185 * 8 7 6 10 10 C 1.47126 * 120.75366 * 180.02562 * 9 8 7 11 11 C 1.39852 * 121.09546 * 64.98836 * 10 9 8 12 12 N 1.31442 * 120.48637 * 180.02562 * 11 10 9 13 13 C 1.32195 * 123.20468 * 359.97438 * 12 11 10 14 14 C 1.36220 * 122.21972 * 0.02562 * 13 12 11 15 15 C 1.41348 * 119.04786 * 359.69589 * 14 13 12 16 16 C 1.40623 * 121.38302 * 180.27844 * 15 14 13 17 17 H 1.08000 * 119.99839 * 204.84293 * 16 15 14 18 18 C 1.40041 * 120.00064 * 24.84075 * 16 15 14 19 19 N 1.30771 * 120.00156 * 13.32432 * 18 16 15 20 20 Si 1.86806 * 120.00111 * 193.32525 * 18 16 15 21 21 H 1.48496 * 109.47051 * 59.99727 * 20 18 16 22 22 H 1.48493 * 109.47065 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46927 * 300.00061 * 20 18 16 24 24 N 1.32167 * 106.67289 * 359.97438 * 5 4 3 25 25 H 1.09005 * 109.47253 * 90.00087 * 1 2 3 26 26 H 1.09007 * 109.47223 * 209.99870 * 1 2 3 27 27 H 1.08995 * 109.47463 * 329.99983 * 1 2 3 28 28 H 1.08002 * 126.03849 * 0.26632 * 3 2 1 29 29 H 1.08000 * 119.68876 * 180.02562 * 6 5 4 30 30 H 1.08002 * 118.66623 * 179.97438 * 7 6 5 31 31 H 1.07997 * 119.37772 * 179.97438 * 8 7 6 32 32 H 1.08003 * 119.76225 * 0.02562 * 11 10 9 33 33 H 1.07998 * 118.88924 * 179.97438 * 13 12 11 34 34 H 1.08001 * 120.47281 * 180.02562 * 14 13 12 35 35 H 0.96995 * 119.99640 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2368 1.0993 0.0000 4 6 3.5512 0.6936 0.0006 5 6 3.5386 -0.7774 0.0016 6 6 4.7700 -1.4643 0.0018 7 6 5.9451 -0.7798 0.0016 8 6 6.0043 0.6068 0.0017 9 6 4.8480 1.3777 0.0013 10 6 4.9233 2.8470 0.0008 11 6 5.4662 3.5421 -1.0845 12 7 5.5281 4.8550 -1.0720 13 6 5.0941 5.5906 -0.0631 14 6 4.5437 5.0387 1.0541 15 6 4.4253 3.6327 1.1381 16 6 3.8597 3.0115 2.2657 17 1 4.1225 1.9928 2.5097 18 6 2.9556 3.7137 3.0723 19 7 2.4367 4.8367 2.6483 20 14 2.4909 3.0465 4.7541 21 1 3.7092 2.9330 5.5955 22 1 1.5257 3.9694 5.4034 23 1 1.8689 1.7068 4.6005 24 7 2.2693 -1.1457 0.0021 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.8872 2.1212 0.0041 29 1 4.7801 -2.5442 0.0021 30 1 6.8697 -1.3378 0.0022 31 1 6.9672 1.0959 0.0020 32 1 5.8374 2.9961 -1.9393 33 1 5.1796 6.6653 -0.1263 34 1 4.1979 5.6668 1.8618 35 1 1.8102 5.3228 3.2069 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241582452.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:43 Heat of formation + Delta-G solvation = 121.634938 kcal Electronic energy + Delta-G solvation = -20924.238958 eV Core-core repulsion = 17888.352201 eV Total energy + Delta-G solvation = -3035.886757 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.54165 -38.18389 -36.41675 -34.31796 -32.53287 -31.76005 -30.27825 -29.25449 -27.74133 -26.79217 -25.88884 -22.78361 -21.67215 -21.20696 -21.07320 -18.95992 -17.65353 -16.64169 -16.24188 -15.70193 -15.19466 -15.14310 -14.55814 -14.38148 -13.91874 -13.46251 -12.84533 -12.75358 -12.71445 -12.56625 -12.27648 -12.19993 -11.55636 -11.42832 -11.25218 -11.20809 -10.96691 -10.82120 -10.44045 -10.08515 -9.65845 -9.61830 -9.41274 -8.11221 -8.03744 -7.89838 -7.64980 -7.08663 -6.74247 -4.74804 1.16584 2.44584 2.58766 2.73722 2.82380 2.89600 2.94005 3.07553 3.16090 3.70495 4.47118 4.51438 4.65390 5.16405 5.22551 5.33659 5.46057 5.47326 5.67359 5.71831 5.80577 6.01036 6.06001 6.16290 6.26896 6.34904 6.69325 6.75473 6.79346 7.01312 7.08832 7.13533 7.26843 7.35307 7.38598 7.44614 7.55618 7.76658 7.95772 8.20161 8.33070 8.53734 8.62225 9.61266 9.83085 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.008852 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.700865 B = 3162.306503 C = 4314.371005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.344 5.344 3 C 0.109 3.891 4 C -0.189 4.189 5 C 0.107 3.893 6 C -0.145 4.145 7 C -0.055 4.055 8 C -0.196 4.196 9 C 0.124 3.876 10 C -0.253 4.253 11 C 0.136 3.864 12 N -0.586 5.586 13 C 0.091 3.909 14 C -0.219 4.219 15 C 0.150 3.850 16 C -0.425 4.425 17 H 0.084 0.916 18 C 0.077 3.923 19 N -0.776 5.776 20 Si 0.908 3.092 21 H -0.259 1.259 22 H -0.275 1.275 23 H -0.263 1.263 24 N -0.333 5.333 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.182 0.818 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.008 -5.462 -0.744 6.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.119 5.119 3 C -0.045 4.045 4 C -0.198 4.198 5 C -0.047 4.047 6 C -0.166 4.166 7 C -0.077 4.077 8 C -0.216 4.216 9 C 0.120 3.880 10 C -0.259 4.259 11 C -0.021 4.021 12 N -0.300 5.300 13 C -0.057 4.057 14 C -0.241 4.241 15 C 0.142 3.858 16 C -0.455 4.455 17 H 0.102 0.898 18 C -0.144 4.144 19 N -0.401 5.401 20 Si 0.732 3.268 21 H -0.183 1.183 22 H -0.200 1.200 23 H -0.188 1.188 24 N -0.160 5.160 25 H 0.094 0.906 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.199 0.801 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.147 0.853 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.871 -5.815 -1.387 7.123 hybrid contribution -0.311 0.106 1.630 1.663 sum -4.182 -5.709 0.243 7.081 Atomic orbital electron populations 1.21913 0.74558 1.04643 1.03369 1.48421 1.06917 1.04192 1.52392 1.22559 0.90765 0.92724 0.98417 1.20483 0.92627 0.92274 1.14438 1.20856 0.92153 0.93074 0.98579 1.19551 0.88646 0.98362 1.10060 1.20340 0.96678 0.94299 0.96410 1.20877 0.97385 0.92917 1.10376 1.19052 0.89020 0.91422 0.88496 1.20534 1.16680 0.90750 0.97908 1.22099 0.94742 0.89991 0.95251 1.67053 1.25514 1.07164 1.30305 1.21600 0.95685 0.97940 0.90498 1.21912 1.06323 0.95819 1.00083 1.18739 0.86303 0.91042 0.89679 1.19483 1.19836 1.00119 1.06048 0.89771 1.26022 0.94633 0.94047 0.99660 1.69767 1.20776 1.12890 1.36633 0.86321 0.79495 0.79810 0.81157 1.18327 1.19986 1.18753 1.77575 1.00924 1.04697 1.32805 0.90576 0.89273 0.89202 0.80087 0.86809 0.86735 0.86551 0.86043 0.86738 0.85343 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.14 11.39 59.85 0.68 1.82 16 2 N -0.34 -6.02 3.96 -67.72 -0.27 -6.29 16 3 C 0.11 2.11 11.33 -16.71 -0.19 1.92 16 4 C -0.19 -3.95 5.87 -103.17 -0.61 -4.56 16 5 C 0.11 2.16 7.49 -83.08 -0.62 1.54 16 6 C -0.14 -2.56 10.03 -39.34 -0.39 -2.96 16 7 C -0.05 -0.91 9.82 -40.19 -0.39 -1.31 16 8 C -0.20 -3.70 9.71 -39.11 -0.38 -4.08 16 9 C 0.12 2.63 4.75 -102.64 -0.49 2.14 16 10 C -0.25 -5.80 5.56 -102.17 -0.57 -6.37 16 11 C 0.14 3.07 10.98 -17.12 -0.19 2.88 16 12 N -0.59 -13.80 10.26 -13.34 -0.14 -13.94 16 13 C 0.09 2.10 11.04 -18.12 -0.20 1.90 16 14 C -0.22 -5.30 8.74 -39.13 -0.34 -5.64 16 15 C 0.15 3.68 5.77 -104.30 -0.60 3.08 16 16 C -0.42 -10.23 8.21 -38.01 -0.31 -10.54 16 17 H 0.08 2.09 7.40 -52.49 -0.39 1.70 16 18 C 0.08 1.75 5.27 -17.33 -0.09 1.66 16 19 N -0.78 -17.72 10.80 55.55 0.60 -17.12 16 20 Si 0.91 17.46 29.58 -169.99 -5.03 12.43 16 21 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 22 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 23 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 24 N -0.33 -6.55 12.55 33.24 0.42 -6.13 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.09 0.90 8.13 -51.93 -0.42 0.48 16 28 H 0.18 3.43 8.06 -52.49 -0.42 3.01 16 29 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 32 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 33 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 34 H 0.13 3.15 6.16 -52.49 -0.32 2.82 16 35 H 0.29 5.96 8.29 -40.82 -0.34 5.62 16 LS Contribution 309.05 15.07 4.66 4.66 Total: -1.00 -28.39 309.05 -8.11 -36.50 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -3.65 Total: 8.41 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -4.70 Total: -18.52 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.61 Total: -43.48 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.39 -8.11 -36.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241582452.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.133 kcal (2) G-P(sol) polarization free energy of solvation -28.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds