Wall clock time and date at job start Tue Mar 31 2020 01:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34323 * 125.07439 * 2 1 4 4 C 1.37557 * 107.92210 * 179.97438 * 3 2 1 5 5 C 1.47107 * 106.66013 * 359.97438 * 4 3 2 6 6 C 1.41005 * 118.66030 * 179.97438 * 5 4 3 7 7 C 1.35984 * 120.62579 * 0.02562 * 6 5 4 8 8 C 1.38784 * 122.66867 * 0.02562 * 7 6 5 9 9 C 1.38974 * 121.24260 * 359.96185 * 8 7 6 10 10 C 1.47126 * 120.75366 * 180.02562 * 9 8 7 11 11 C 1.39852 * 121.09546 * 64.98836 * 10 9 8 12 12 N 1.31442 * 120.48637 * 180.02562 * 11 10 9 13 13 C 1.32195 * 123.20468 * 359.97438 * 12 11 10 14 14 C 1.36220 * 122.21972 * 0.02562 * 13 12 11 15 15 C 1.41348 * 119.04786 * 359.69589 * 14 13 12 16 16 C 1.40623 * 121.38302 * 180.27844 * 15 14 13 17 17 H 1.08000 * 119.99839 * 204.84293 * 16 15 14 18 18 C 1.40041 * 120.00064 * 24.84075 * 16 15 14 19 19 N 1.30771 * 120.00156 * 13.32432 * 18 16 15 20 20 Si 1.86806 * 120.00111 * 193.32525 * 18 16 15 21 21 H 1.48496 * 109.47051 * 59.99727 * 20 18 16 22 22 H 1.48493 * 109.47065 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46927 * 300.00061 * 20 18 16 24 24 N 1.32167 * 106.67289 * 359.97438 * 5 4 3 25 25 H 1.09005 * 109.47253 * 90.00087 * 1 2 3 26 26 H 1.09007 * 109.47223 * 209.99870 * 1 2 3 27 27 H 1.08995 * 109.47463 * 329.99983 * 1 2 3 28 28 H 1.08002 * 126.03849 * 0.26632 * 3 2 1 29 29 H 1.08000 * 119.68876 * 180.02562 * 6 5 4 30 30 H 1.08002 * 118.66623 * 179.97438 * 7 6 5 31 31 H 1.07997 * 119.37772 * 179.97438 * 8 7 6 32 32 H 1.08003 * 119.76225 * 0.02562 * 11 10 9 33 33 H 1.07998 * 118.88924 * 179.97438 * 13 12 11 34 34 H 1.08001 * 120.47281 * 180.02562 * 14 13 12 35 35 H 0.96995 * 119.99640 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2368 1.0993 0.0000 4 6 3.5512 0.6936 0.0006 5 6 3.5386 -0.7774 0.0016 6 6 4.7700 -1.4643 0.0018 7 6 5.9451 -0.7798 0.0016 8 6 6.0043 0.6068 0.0017 9 6 4.8480 1.3777 0.0013 10 6 4.9233 2.8470 0.0008 11 6 5.4662 3.5421 -1.0845 12 7 5.5281 4.8550 -1.0720 13 6 5.0941 5.5906 -0.0631 14 6 4.5437 5.0387 1.0541 15 6 4.4253 3.6327 1.1381 16 6 3.8597 3.0115 2.2657 17 1 4.1225 1.9928 2.5097 18 6 2.9556 3.7137 3.0723 19 7 2.4367 4.8367 2.6483 20 14 2.4909 3.0465 4.7541 21 1 3.7092 2.9330 5.5955 22 1 1.5257 3.9694 5.4034 23 1 1.8689 1.7068 4.6005 24 7 2.2693 -1.1457 0.0021 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.8872 2.1212 0.0041 29 1 4.7801 -2.5442 0.0021 30 1 6.8697 -1.3378 0.0022 31 1 6.9672 1.0959 0.0020 32 1 5.8374 2.9961 -1.9393 33 1 5.1796 6.6653 -0.1263 34 1 4.1979 5.6668 1.8618 35 1 1.8102 5.3228 3.2069 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241582452.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:42 Heat of formation + Delta-G solvation = 107.189473 kcal Electronic energy + Delta-G solvation = -20924.865360 eV Core-core repulsion = 17888.352201 eV Total energy + Delta-G solvation = -3036.513160 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.96714 -39.93264 -37.84056 -36.07885 -34.01211 -33.13377 -32.04208 -30.81834 -29.29851 -28.12536 -27.56273 -24.30251 -23.37055 -22.75024 -22.56339 -20.52174 -19.43099 -18.00784 -17.69205 -17.39370 -16.61276 -16.44393 -16.24974 -16.06979 -15.50381 -14.89641 -14.46354 -14.18048 -13.99773 -13.90741 -13.83874 -13.67563 -13.25591 -13.08660 -12.84131 -12.60414 -12.45291 -12.17659 -12.00607 -11.76044 -11.32589 -11.21154 -10.93463 -9.85482 -9.82459 -9.47899 -9.29127 -8.78182 -8.26686 -6.55619 -0.28474 0.76588 1.01904 1.09223 1.33376 1.41874 1.51563 1.55908 1.58738 2.10861 2.74031 3.01287 3.35978 3.67744 3.81967 4.03536 4.19387 4.27968 4.35422 4.38077 4.49384 4.54724 4.58937 4.64888 4.74262 4.93227 4.98493 5.04284 5.23148 5.33044 5.44296 5.60946 5.65900 5.71559 5.90243 5.96592 6.00790 6.14352 6.16828 6.52119 6.73521 6.75493 6.82641 7.80688 8.14042 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.008852 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.700865 B = 3162.306503 C = 4314.371005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.335 5.335 3 C 0.097 3.903 4 C -0.210 4.210 5 C 0.084 3.916 6 C -0.144 4.144 7 C -0.053 4.053 8 C -0.188 4.188 9 C 0.086 3.914 10 C -0.248 4.248 11 C 0.125 3.875 12 N -0.598 5.598 13 C 0.086 3.914 14 C -0.238 4.238 15 C 0.127 3.873 16 C -0.439 4.439 17 H 0.069 0.931 18 C 0.049 3.951 19 N -0.794 5.794 20 Si 0.968 3.032 21 H -0.262 1.262 22 H -0.259 1.259 23 H -0.268 1.268 24 N -0.345 5.345 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.177 0.823 29 H 0.140 0.860 30 H 0.157 0.843 31 H 0.125 0.875 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.121 0.879 35 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.317 -6.814 -0.363 7.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.110 5.110 3 C -0.058 4.058 4 C -0.220 4.220 5 C -0.068 4.068 6 C -0.165 4.165 7 C -0.075 4.075 8 C -0.207 4.207 9 C 0.082 3.918 10 C -0.254 4.254 11 C -0.031 4.031 12 N -0.313 5.313 13 C -0.062 4.062 14 C -0.260 4.260 15 C 0.119 3.881 16 C -0.468 4.468 17 H 0.087 0.913 18 C -0.170 4.170 19 N -0.418 5.418 20 Si 0.789 3.211 21 H -0.186 1.186 22 H -0.182 1.182 23 H -0.193 1.193 24 N -0.174 5.174 25 H 0.118 0.882 26 H 0.122 0.878 27 H 0.125 0.875 28 H 0.194 0.806 29 H 0.158 0.842 30 H 0.175 0.825 31 H 0.143 0.857 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.138 0.862 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.193 -7.172 -1.025 8.371 hybrid contribution -0.258 0.464 1.460 1.554 sum -4.451 -6.708 0.436 8.062 Atomic orbital electron populations 1.22382 0.71487 1.06242 1.05449 1.48805 1.08593 1.03054 1.50580 1.22503 0.90948 0.93024 0.99340 1.20691 0.93038 0.93044 1.15186 1.21294 0.93121 0.92971 0.99419 1.19982 0.88023 0.99775 1.08701 1.20692 0.98170 0.93397 0.95239 1.21153 0.96958 0.94135 1.08492 1.19113 0.90230 0.90733 0.91681 1.20728 1.15433 0.91972 0.97244 1.22443 0.94851 0.89951 0.95875 1.67107 1.26024 1.07697 1.30438 1.21906 0.95167 0.99067 0.90107 1.21901 1.07677 0.95919 1.00520 1.19045 0.86996 0.91514 0.90507 1.19438 1.20869 0.99662 1.06877 0.91250 1.26609 0.94089 0.94158 1.02176 1.69780 1.20841 1.13439 1.37779 0.85437 0.79231 0.79100 0.77300 1.18602 1.18228 1.19301 1.77478 1.01071 1.05751 1.33063 0.88211 0.87796 0.87528 0.80561 0.84216 0.82537 0.85729 0.84125 0.84578 0.86169 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.81 11.39 127.77 1.46 3.27 16 2 N -0.34 -11.45 3.96 -368.15 -1.46 -12.91 16 3 C 0.10 3.79 11.33 84.15 0.95 4.75 16 4 C -0.21 -8.84 5.87 -18.93 -0.11 -8.95 16 5 C 0.08 3.34 7.49 42.10 0.32 3.65 16 6 C -0.14 -4.78 10.03 22.42 0.22 -4.55 16 7 C -0.05 -1.63 9.82 21.88 0.21 -1.41 16 8 C -0.19 -6.89 9.71 22.58 0.22 -6.67 16 9 C 0.09 3.67 4.75 -18.58 -0.09 3.58 16 10 C -0.25 -11.58 5.56 -18.28 -0.10 -11.68 16 11 C 0.12 5.65 10.98 85.14 0.93 6.59 16 12 N -0.60 -28.25 10.26 -196.12 -2.01 -30.27 16 13 C 0.09 4.02 11.04 84.17 0.93 4.95 16 14 C -0.24 -11.76 8.74 22.56 0.20 -11.56 16 15 C 0.13 6.38 5.77 -19.66 -0.11 6.27 16 16 C -0.44 -21.57 8.21 23.29 0.19 -21.38 16 17 H 0.07 3.54 7.40 -2.91 -0.02 3.52 16 18 C 0.05 2.23 5.27 85.29 0.45 2.68 16 19 N -0.79 -36.40 10.80 21.84 0.24 -36.16 16 20 Si 0.97 35.47 29.58 68.60 2.03 37.49 16 21 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 22 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 23 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 24 N -0.35 -13.22 12.55 -48.76 -0.61 -13.83 16 25 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 26 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 27 H 0.11 1.95 8.13 -2.39 -0.02 1.94 16 28 H 0.18 6.92 8.06 -2.91 -0.02 6.90 16 29 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 30 H 0.16 3.46 8.06 -2.91 -0.02 3.43 16 31 H 0.12 4.26 8.06 -2.91 -0.02 4.23 16 32 H 0.14 5.67 8.06 -2.91 -0.02 5.65 16 33 H 0.14 5.57 8.06 -2.91 -0.02 5.55 16 34 H 0.12 6.04 6.16 -2.91 -0.02 6.02 16 35 H 0.30 12.18 8.29 -92.71 -0.77 11.41 16 Total: -1.00 -61.22 309.05 4.97 -56.26 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: 1.11 Total: 29.89 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 5.67 Total: -30.47 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -3.85 Total: -93.17 kcal Atomic # 14 Polarization: 35.47 SS G_CDS: 2.03 Total: 37.49 kcal Total: -61.22 4.97 -56.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241582452.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.445 kcal (2) G-P(sol) polarization free energy of solvation -61.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds