Wall clock time and date at job start Tue Mar 31 2020 01:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34066 * 125.02207 * 2 1 4 4 C 1.38171 * 107.95118 * 180.02562 * 3 2 1 5 5 C 1.41271 * 134.54272 * 180.02562 * 4 3 2 6 6 C 1.35329 * 119.85091 * 180.02562 * 5 4 3 7 7 C 1.40775 * 121.60826 * 359.97354 * 6 5 4 8 8 C 1.48195 * 119.32213 * 179.74018 * 7 6 5 9 9 C 1.39969 * 119.61164 * 5.00847 * 8 7 6 10 10 C 1.38668 * 119.46416 * 179.97438 * 9 8 7 11 11 C 1.38311 * 118.69624 * 359.97438 * 10 9 8 12 12 C 1.40695 * 119.19590 * 359.97438 * 11 10 9 13 13 C 1.41361 * 119.76332 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99801 * 0.02562 * 13 12 11 15 15 C 1.39988 * 120.00004 * 180.02562 * 13 12 11 16 16 N 1.30756 * 119.99946 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99797 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47361 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46922 * 120.00314 * 17 15 13 20 20 H 1.48499 * 109.47465 * 240.00230 * 17 15 13 21 21 N 1.32278 * 119.61852 * 184.73142 * 8 7 6 22 22 C 1.37859 * 121.36027 * 0.02562 * 7 6 5 23 23 C 1.40890 * 119.41290 * 0.02562 * 22 7 6 24 24 N 1.32181 * 134.50619 * 180.02562 * 23 22 7 25 25 H 1.08995 * 109.47925 * 89.99463 * 1 2 3 26 26 H 1.09003 * 109.46837 * 209.99836 * 1 2 3 27 27 H 1.09000 * 109.47157 * 329.99386 * 1 2 3 28 28 H 1.07995 * 126.02000 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.07730 * 0.02562 * 5 4 3 30 30 H 1.07998 * 119.19569 * 180.02562 * 6 5 4 31 31 H 1.08003 * 120.26756 * 0.02562 * 9 8 7 32 32 H 1.08003 * 120.65244 * 180.02562 * 10 9 8 33 33 H 1.07997 * 120.39771 * 180.02562 * 11 10 9 34 34 H 0.97008 * 119.99974 * 179.97438 * 16 15 13 35 35 H 1.07998 * 120.29090 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2344 1.0979 0.0000 4 6 3.5552 0.6923 -0.0006 5 6 4.7980 1.3639 -0.0004 6 6 5.9486 0.6515 -0.0017 7 6 5.9449 -0.7562 -0.0027 8 6 7.2350 -1.4854 -0.0099 9 6 8.4341 -0.7705 0.0906 10 6 9.6395 -1.4560 0.0840 11 6 9.6188 -2.8348 -0.0219 12 6 8.3813 -3.4972 -0.1187 13 6 8.3461 -4.9062 -0.2279 14 1 9.2671 -5.4703 -0.2364 15 6 7.1177 -5.5703 -0.3251 16 7 6.0027 -4.8873 -0.3153 17 14 7.0713 -7.4320 -0.4701 18 1 8.4576 -7.9641 -0.4585 19 1 6.3144 -7.9990 0.6748 20 1 6.4050 -7.8131 -1.7414 21 7 7.2397 -2.8047 -0.1057 22 6 4.7657 -1.4705 -0.0029 23 6 3.5380 -0.7792 -0.0026 24 7 2.2682 -1.1461 -0.0023 25 1 -0.3635 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.8835 2.1193 0.0004 29 1 4.8299 2.4435 0.0007 30 1 6.8928 1.1758 -0.0011 31 1 8.4206 0.3063 0.1734 32 1 10.5761 -0.9236 0.1609 33 1 10.5413 -3.3963 -0.0293 34 1 5.1514 -5.3474 -0.3830 35 1 4.7830 -2.5503 -0.0032 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241600443.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:21 Heat of formation + Delta-G solvation = 133.703508 kcal Electronic energy + Delta-G solvation = -20160.727948 eV Core-core repulsion = 17125.364523 eV Total energy + Delta-G solvation = -3035.363425 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.85843 -38.38349 -36.56814 -33.63612 -32.55748 -31.76238 -30.40939 -29.62959 -28.25747 -27.02726 -25.43222 -22.94918 -22.11311 -21.05101 -20.34853 -19.79585 -17.44056 -16.83070 -16.30976 -15.74649 -15.44202 -14.85779 -14.37208 -14.18064 -13.72163 -13.31650 -13.14446 -13.09665 -12.87624 -12.54464 -12.33390 -12.12540 -11.30546 -11.28514 -11.07842 -10.97033 -10.87462 -10.65194 -10.41279 -9.95203 -9.87750 -9.70081 -9.38134 -8.59537 -8.00872 -7.57189 -7.41184 -6.91923 -6.37768 -4.48805 0.98834 2.01151 2.55387 2.82158 2.88777 3.12998 3.15816 3.16942 3.25993 3.98344 4.40071 4.42682 4.72235 4.89436 4.97253 5.07949 5.24220 5.31299 5.58117 5.66600 5.81110 5.97531 6.02923 6.18398 6.21320 6.51345 6.68726 6.77282 6.86563 6.92271 7.00939 7.09271 7.21518 7.27916 7.41950 7.55371 7.63568 7.76350 8.03973 8.06660 8.26095 8.70023 8.94769 10.08981 10.34502 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016634 B = 0.005443 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.878663 B = 5143.317550 C = 6807.976767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.335 5.335 3 C 0.054 3.946 4 C -0.199 4.199 5 C -0.076 4.076 6 C -0.120 4.120 7 C 0.004 3.996 8 C 0.176 3.824 9 C -0.299 4.299 10 C -0.060 4.060 11 C -0.273 4.273 12 C 0.256 3.744 13 C -0.432 4.432 14 H 0.084 0.916 15 C 0.070 3.930 16 N -0.715 5.715 17 Si 0.906 3.094 18 H -0.261 1.261 19 H -0.273 1.273 20 H -0.274 1.274 21 N -0.467 5.467 22 C -0.065 4.065 23 C 0.104 3.896 24 N -0.308 5.308 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.178 0.822 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.273 0.727 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.126 10.344 0.467 13.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.110 5.110 3 C -0.101 4.101 4 C -0.209 4.209 5 C -0.096 4.096 6 C -0.140 4.140 7 C -0.001 4.001 8 C 0.031 3.969 9 C -0.322 4.322 10 C -0.085 4.085 11 C -0.296 4.296 12 C 0.131 3.869 13 C -0.463 4.463 14 H 0.102 0.898 15 C -0.155 4.155 16 N -0.336 5.336 17 Si 0.731 3.269 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.199 1.199 21 N -0.179 5.179 22 C -0.087 4.087 23 C -0.049 4.049 24 N -0.136 5.136 25 H 0.097 0.903 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.195 0.805 29 H 0.135 0.865 30 H 0.142 0.858 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -11.153 8.778 0.395 14.199 hybrid contribution 1.223 0.463 -0.022 1.308 sum -9.930 9.241 0.373 13.570 Atomic orbital electron populations 1.21950 0.74354 1.04707 1.03683 1.48472 1.07153 1.04308 1.51100 1.22426 0.90661 0.92803 1.04164 1.19660 0.92935 0.93905 1.14400 1.19927 0.89893 0.98318 1.01460 1.20689 0.97921 0.93371 1.01990 1.18497 0.92045 0.91758 0.97842 1.19735 0.90149 0.91415 0.95569 1.21223 0.93080 0.98403 1.19515 1.20784 0.96232 0.94285 0.97150 1.21793 0.98362 0.94126 1.15295 1.18518 0.86187 0.93659 0.88542 1.19616 0.93549 0.90402 1.42718 0.89801 1.26026 0.95421 1.00381 0.93654 1.70071 0.98194 1.36656 1.28713 0.86293 0.79486 0.82599 0.78563 1.18489 1.19872 1.19878 1.68756 1.28755 1.03800 1.16617 1.20769 0.86504 1.01838 0.99635 1.21078 0.92319 0.92683 0.98776 1.77795 1.01322 1.03717 1.30752 0.90317 0.88909 0.89330 0.80508 0.86477 0.85789 0.88273 0.88508 0.88324 0.91588 0.82071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 11.38 59.84 0.68 1.45 16 2 N -0.33 -4.71 3.95 -67.62 -0.27 -4.98 16 3 C 0.05 0.70 11.50 -16.60 -0.19 0.51 16 4 C -0.20 -3.38 6.32 -105.15 -0.66 -4.04 16 5 C -0.08 -1.20 10.06 -39.47 -0.40 -1.59 16 6 C -0.12 -2.18 9.27 -39.66 -0.37 -2.55 16 7 C 0.00 0.09 5.86 -104.99 -0.62 -0.52 16 8 C 0.18 4.38 6.72 -82.94 -0.56 3.82 16 9 C -0.30 -6.79 9.45 -38.77 -0.37 -7.15 16 10 C -0.06 -1.36 10.15 -39.40 -0.40 -1.76 16 11 C -0.27 -6.76 9.83 -38.63 -0.38 -7.14 16 12 C 0.26 7.08 6.55 -85.01 -0.56 6.52 16 13 C -0.43 -11.60 9.14 -37.74 -0.34 -11.95 16 14 H 0.08 2.11 7.85 -52.48 -0.41 1.70 16 15 C 0.07 1.80 5.50 -17.35 -0.10 1.71 16 16 N -0.71 -19.07 11.05 55.55 0.61 -18.46 16 17 Si 0.91 18.88 29.56 -169.99 -5.02 13.86 16 18 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 N -0.47 -12.92 6.83 -7.68 -0.05 -12.98 16 22 C -0.07 -1.50 9.62 -38.72 -0.37 -1.87 16 23 C 0.10 2.13 7.48 -83.09 -0.62 1.51 16 24 N -0.31 -5.93 12.55 33.23 0.42 -5.51 16 25 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 0.42 8.13 -51.93 -0.42 0.00 16 28 H 0.18 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.12 2.01 6.06 -52.49 -0.32 1.70 16 31 H 0.10 1.94 6.11 -52.48 -0.32 1.62 16 32 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 33 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 34 H 0.27 6.68 8.30 -40.82 -0.34 6.34 16 35 H 0.16 4.13 7.05 -52.49 -0.37 3.76 16 LS Contribution 306.08 15.07 4.61 4.61 Total: -1.00 -32.71 306.08 -8.46 -41.17 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -3.51 Total: 5.36 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -5.25 Total: -23.06 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.71 Total: -41.93 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.71 -8.46 -41.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241600443.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.873 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds