Wall clock time and date at job start Tue Mar 31 2020 01:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34066 * 125.02207 * 2 1 4 4 C 1.38171 * 107.95118 * 180.02562 * 3 2 1 5 5 C 1.41271 * 134.54272 * 180.02562 * 4 3 2 6 6 C 1.35329 * 119.85091 * 180.02562 * 5 4 3 7 7 C 1.40775 * 121.60826 * 359.97354 * 6 5 4 8 8 C 1.48195 * 119.32213 * 179.74018 * 7 6 5 9 9 C 1.39969 * 119.61164 * 5.00847 * 8 7 6 10 10 C 1.38668 * 119.46416 * 179.97438 * 9 8 7 11 11 C 1.38311 * 118.69624 * 359.97438 * 10 9 8 12 12 C 1.40695 * 119.19590 * 359.97438 * 11 10 9 13 13 C 1.41361 * 119.76332 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99801 * 0.02562 * 13 12 11 15 15 C 1.39988 * 120.00004 * 180.02562 * 13 12 11 16 16 N 1.30756 * 119.99946 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99797 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47361 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46922 * 120.00314 * 17 15 13 20 20 H 1.48499 * 109.47465 * 240.00230 * 17 15 13 21 21 N 1.32278 * 119.61852 * 184.73142 * 8 7 6 22 22 C 1.37859 * 121.36027 * 0.02562 * 7 6 5 23 23 C 1.40890 * 119.41290 * 0.02562 * 22 7 6 24 24 N 1.32181 * 134.50619 * 180.02562 * 23 22 7 25 25 H 1.08995 * 109.47925 * 89.99463 * 1 2 3 26 26 H 1.09003 * 109.46837 * 209.99836 * 1 2 3 27 27 H 1.09000 * 109.47157 * 329.99386 * 1 2 3 28 28 H 1.07995 * 126.02000 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.07730 * 0.02562 * 5 4 3 30 30 H 1.07998 * 119.19569 * 180.02562 * 6 5 4 31 31 H 1.08003 * 120.26756 * 0.02562 * 9 8 7 32 32 H 1.08003 * 120.65244 * 180.02562 * 10 9 8 33 33 H 1.07997 * 120.39771 * 180.02562 * 11 10 9 34 34 H 0.97008 * 119.99974 * 179.97438 * 16 15 13 35 35 H 1.07998 * 120.29090 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2344 1.0979 0.0000 4 6 3.5552 0.6923 -0.0006 5 6 4.7980 1.3639 -0.0004 6 6 5.9486 0.6515 -0.0017 7 6 5.9449 -0.7562 -0.0027 8 6 7.2350 -1.4854 -0.0099 9 6 8.4341 -0.7705 0.0906 10 6 9.6395 -1.4560 0.0840 11 6 9.6188 -2.8348 -0.0219 12 6 8.3813 -3.4972 -0.1187 13 6 8.3461 -4.9062 -0.2279 14 1 9.2671 -5.4703 -0.2364 15 6 7.1177 -5.5703 -0.3251 16 7 6.0027 -4.8873 -0.3153 17 14 7.0713 -7.4320 -0.4701 18 1 8.4576 -7.9641 -0.4585 19 1 6.3144 -7.9990 0.6748 20 1 6.4050 -7.8131 -1.7414 21 7 7.2397 -2.8047 -0.1057 22 6 4.7657 -1.4705 -0.0029 23 6 3.5380 -0.7792 -0.0026 24 7 2.2682 -1.1461 -0.0023 25 1 -0.3635 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.8835 2.1193 0.0004 29 1 4.8299 2.4435 0.0007 30 1 6.8928 1.1758 -0.0011 31 1 8.4206 0.3063 0.1734 32 1 10.5761 -0.9236 0.1609 33 1 10.5413 -3.3963 -0.0293 34 1 5.1514 -5.3474 -0.3830 35 1 4.7830 -2.5503 -0.0032 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241600443.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:19 Heat of formation + Delta-G solvation = 113.246056 kcal Electronic energy + Delta-G solvation = -20161.615050 eV Core-core repulsion = 17125.364523 eV Total energy + Delta-G solvation = -3036.250526 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.08883 -40.18162 -38.00406 -35.50450 -33.78504 -33.25606 -32.25134 -31.18471 -29.61765 -28.42647 -27.10846 -24.45498 -23.64456 -22.64896 -21.83045 -21.21424 -19.28405 -18.14663 -17.54759 -17.37578 -16.55561 -16.46154 -16.15451 -15.81367 -15.22441 -14.74844 -14.61682 -14.44363 -14.12698 -13.83247 -13.72084 -13.58495 -12.95639 -12.79733 -12.71492 -12.61810 -12.42119 -12.24087 -12.09351 -11.69934 -11.26400 -11.14604 -11.08274 -10.25208 -9.83086 -9.47017 -8.92831 -8.42361 -8.27177 -6.50270 -0.35961 0.55141 1.09039 1.32933 1.37469 1.50759 1.53575 1.60306 1.66194 2.21369 2.78763 3.13340 3.30044 3.75018 3.88332 4.02141 4.19432 4.33477 4.36823 4.42097 4.50396 4.52360 4.68203 4.76172 4.78161 4.85912 4.92610 5.00266 5.18967 5.36109 5.45706 5.61708 5.64603 5.69008 5.85929 5.96019 6.00654 6.13956 6.24908 6.30123 6.72892 6.77286 6.97044 8.18707 8.45554 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016634 B = 0.005443 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.878663 B = 5143.317550 C = 6807.976767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.326 5.326 3 C 0.101 3.899 4 C -0.232 4.232 5 C -0.033 4.033 6 C -0.155 4.155 7 C -0.005 4.005 8 C 0.147 3.853 9 C -0.291 4.291 10 C -0.058 4.058 11 C -0.293 4.293 12 C 0.220 3.780 13 C -0.470 4.470 14 H 0.090 0.910 15 C 0.023 3.977 16 N -0.754 5.754 17 Si 0.986 3.014 18 H -0.250 1.250 19 H -0.269 1.269 20 H -0.269 1.269 21 N -0.502 5.502 22 C -0.109 4.109 23 C 0.075 3.925 24 N -0.366 5.366 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.137 0.863 28 H 0.247 0.753 29 H 0.173 0.827 30 H 0.144 0.856 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.111 0.889 34 H 0.273 0.727 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.567 14.205 0.534 17.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.100 5.100 3 C -0.056 4.056 4 C -0.242 4.242 5 C -0.053 4.053 6 C -0.175 4.175 7 C -0.010 4.010 8 C 0.004 3.996 9 C -0.313 4.313 10 C -0.082 4.082 11 C -0.316 4.316 12 C 0.094 3.906 13 C -0.502 4.502 14 H 0.108 0.892 15 C -0.198 4.198 16 N -0.376 5.376 17 Si 0.806 3.194 18 H -0.173 1.173 19 H -0.194 1.194 20 H -0.194 1.194 21 N -0.215 5.215 22 C -0.132 4.132 23 C -0.076 4.076 24 N -0.196 5.196 25 H 0.116 0.884 26 H 0.106 0.894 27 H 0.155 0.845 28 H 0.263 0.737 29 H 0.190 0.810 30 H 0.162 0.838 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.129 0.871 34 H 0.084 0.916 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.598 12.639 0.464 17.851 hybrid contribution 1.448 -0.462 -0.029 1.520 sum -11.149 12.177 0.435 16.516 Atomic orbital electron populations 1.22509 0.70834 1.06907 1.05614 1.49013 1.09132 1.03508 1.48306 1.23451 0.88730 0.94889 0.98506 1.20139 0.95435 0.91943 1.16677 1.20470 0.88310 1.00610 0.95922 1.20764 1.00068 0.91180 1.05496 1.18687 0.90410 0.93830 0.98080 1.20461 0.92657 0.91140 0.95390 1.21681 0.92253 1.00299 1.17097 1.21264 0.98060 0.93543 0.95364 1.22022 0.97878 0.95627 1.16052 1.19054 0.87479 0.94649 0.89455 1.19962 0.94488 0.90944 1.44789 0.89227 1.26984 0.94560 1.05552 0.92715 1.70249 0.98711 1.38648 1.29963 0.85111 0.79846 0.75891 0.78546 1.17341 1.19387 1.19369 1.68748 1.29402 1.05577 1.17783 1.20431 0.88924 0.99994 1.03813 1.20991 0.91889 0.95012 0.99667 1.77720 1.01577 1.06740 1.33568 0.88435 0.89436 0.84488 0.73733 0.81011 0.83817 0.84466 0.84142 0.87053 0.91604 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 11.38 127.77 1.45 2.43 16 2 N -0.33 -8.19 3.95 -367.84 -1.45 -9.65 16 3 C 0.10 2.11 11.50 84.34 0.97 3.08 16 4 C -0.23 -7.26 6.32 -20.20 -0.13 -7.38 16 5 C -0.03 -0.93 10.06 22.34 0.22 -0.71 16 6 C -0.16 -5.47 9.27 22.22 0.21 -5.26 16 7 C 0.00 -0.23 5.86 -20.10 -0.12 -0.35 16 8 C 0.15 7.71 6.72 42.14 0.28 7.99 16 9 C -0.29 -13.16 9.45 22.79 0.22 -12.95 16 10 C -0.06 -2.60 10.15 22.39 0.23 -2.37 16 11 C -0.29 -15.00 9.83 22.89 0.23 -14.77 16 12 C 0.22 12.93 6.55 40.25 0.26 13.20 16 13 C -0.47 -27.01 9.14 23.46 0.21 -26.80 16 14 H 0.09 4.79 7.85 -2.91 -0.02 4.76 16 15 C 0.02 1.26 5.50 85.28 0.47 1.73 16 16 N -0.75 -43.94 11.05 21.83 0.24 -43.69 16 17 Si 0.99 41.01 29.56 68.60 2.03 43.04 16 18 H -0.25 -9.83 7.11 99.48 0.71 -9.13 16 19 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 20 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 21 N -0.50 -30.02 6.83 -178.23 -1.22 -31.24 16 22 C -0.11 -5.47 9.62 22.83 0.22 -5.25 16 23 C 0.07 3.19 7.48 42.09 0.31 3.50 16 24 N -0.37 -14.48 12.55 -48.79 -0.61 -15.09 16 25 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.14 0.41 8.13 -2.39 -0.02 0.39 16 28 H 0.25 1.64 8.06 -2.91 -0.02 1.62 16 29 H 0.17 2.90 8.06 -2.91 -0.02 2.87 16 30 H 0.14 4.30 6.06 -2.91 -0.02 4.28 16 31 H 0.14 5.04 6.11 -2.91 -0.02 5.03 16 32 H 0.14 4.94 8.06 -2.91 -0.02 4.92 16 33 H 0.11 5.21 8.06 -2.91 -0.02 5.19 16 34 H 0.27 14.76 8.30 -92.70 -0.77 13.99 16 35 H 0.11 6.64 7.05 -2.91 -0.02 6.62 16 Total: -1.00 -83.36 306.08 5.15 -78.21 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 1.12 Total: 22.32 kcal Atomic # 6 Polarization: -48.95 SS G_CDS: 5.04 Total: -43.91 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -3.04 Total: -99.67 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -83.36 5.15 -78.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241600443.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.459 kcal (2) G-P(sol) polarization free energy of solvation -83.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds