Wall clock time and date at job start Tue Mar 31 2020 01:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34183 * 125.03651 * 2 1 4 4 C 1.38077 * 107.97658 * 179.90308 * 3 2 1 5 5 C 1.41370 * 134.48108 * 180.08966 * 4 3 2 6 6 C 1.35233 * 119.90591 * 180.28508 * 5 4 3 7 7 C 1.40907 * 121.58948 * 0.02562 * 6 5 4 8 8 C 1.47725 * 119.36188 * 179.97438 * 7 6 5 9 9 C 1.40425 * 120.35158 * 0.02562 * 8 7 6 10 10 C 1.36562 * 118.59948 * 179.97438 * 9 8 7 11 11 C 1.40939 * 119.27193 * 0.02562 * 10 9 8 12 12 C 1.40874 * 119.67523 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99596 * 359.97438 * 12 11 10 14 14 C 1.40009 * 120.00044 * 180.02562 * 12 11 10 15 15 N 1.30771 * 120.00210 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99973 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47061 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47022 * 119.99619 * 16 14 12 19 19 H 1.48502 * 109.46903 * 239.99692 * 16 14 12 20 20 N 1.33827 * 120.65502 * 359.97438 * 11 10 9 21 21 C 1.31164 * 121.50588 * 359.70156 * 20 11 10 22 22 C 1.38366 * 121.28081 * 359.97364 * 7 6 5 23 23 C 1.40751 * 119.38506 * 0.02562 * 22 7 6 24 24 N 1.32271 * 134.47106 * 179.97438 * 23 22 7 25 25 H 1.09001 * 109.47060 * 269.72379 * 1 2 3 26 26 H 1.09004 * 109.47073 * 29.71868 * 1 2 3 27 27 H 1.09000 * 109.47212 * 149.71950 * 1 2 3 28 28 H 1.08001 * 126.01017 * 0.03368 * 3 2 1 29 29 H 1.08001 * 120.04237 * 0.31023 * 5 4 3 30 30 H 1.08001 * 119.20588 * 180.02562 * 6 5 4 31 31 H 1.07995 * 120.69921 * 359.97438 * 9 8 7 32 32 H 1.08001 * 120.36782 * 179.97438 * 10 9 8 33 33 H 0.96997 * 120.00209 * 180.02562 * 15 14 12 34 34 H 1.08001 * 119.66390 * 180.30695 * 21 20 11 35 35 H 1.08001 * 120.30830 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2354 1.0987 0.0000 4 6 3.5554 0.6936 0.0022 5 6 4.7983 1.3673 0.0049 6 6 5.9497 0.6580 0.0008 7 6 5.9485 -0.7511 -0.0067 8 6 7.2355 -1.4764 -0.0114 9 6 8.4486 -0.7692 -0.0081 10 6 9.6172 -1.4758 -0.0121 11 6 9.5708 -2.8844 -0.0201 12 6 10.7711 -3.6217 -0.0238 13 1 11.7208 -3.1074 -0.0210 14 6 10.7330 -5.0213 -0.0323 15 7 9.5831 -5.6441 -0.0362 16 14 12.3246 -5.9990 -0.0379 17 1 13.4792 -5.0652 -0.0327 18 1 12.3798 -6.8618 1.1694 19 1 12.3801 -6.8473 -1.2556 20 7 8.3977 -3.5284 -0.0232 21 6 7.2587 -2.8781 -0.0131 22 6 4.7655 -1.4686 -0.0096 23 6 3.5390 -0.7781 -0.0055 24 7 2.2684 -1.1460 -0.0071 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3633 0.8925 -0.5095 27 1 -0.3634 -0.8875 -0.5182 28 1 1.8846 2.1201 0.0005 29 1 4.8281 2.4468 0.0106 30 1 6.8928 1.1842 0.0033 31 1 8.4572 0.3107 -0.0024 32 1 10.5666 -0.9609 -0.0101 33 1 9.5566 -6.6136 -0.0417 34 1 6.3292 -3.4281 -0.0109 35 1 4.7829 -2.5484 -0.0149 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241600910.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:03 Heat of formation + Delta-G solvation = 129.169485 kcal Electronic energy + Delta-G solvation = -19671.319839 eV Core-core repulsion = 16635.759805 eV Total energy + Delta-G solvation = -3035.560035 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.83763 -38.48459 -36.67808 -33.87599 -32.60518 -31.76669 -30.73919 -29.66303 -28.35564 -27.15694 -25.22178 -22.99166 -22.17137 -21.23390 -20.34914 -19.83619 -17.69165 -16.87592 -16.41824 -15.79330 -15.44808 -15.36897 -14.40101 -14.17247 -13.78070 -13.29723 -13.11374 -13.03082 -12.93297 -12.70448 -12.35626 -12.16069 -11.76343 -11.42211 -11.13919 -11.00726 -10.97914 -10.84147 -10.42856 -10.04474 -9.92796 -9.81121 -9.55096 -8.65369 -8.22238 -7.65108 -7.45141 -6.98093 -6.56528 -4.61533 0.93476 2.00699 2.55438 2.75375 2.84988 3.00893 3.05347 3.05396 3.22367 3.81526 4.36697 4.38524 4.68783 4.76000 4.94200 5.06456 5.20627 5.34554 5.59944 5.67630 5.81900 5.84859 5.94582 5.98519 6.13733 6.38527 6.55133 6.66422 6.72781 6.91367 6.96261 6.98649 7.06871 7.15790 7.29707 7.35704 7.62608 7.75489 7.91676 8.03504 8.08522 8.47171 8.77215 9.98019 10.13273 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.040053 B = 0.003394 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.900222 B = 8248.229875 C = 8931.983065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.341 5.341 3 C 0.063 3.937 4 C -0.217 4.217 5 C -0.057 4.057 6 C -0.142 4.142 7 C 0.070 3.930 8 C -0.279 4.279 9 C -0.033 4.033 10 C -0.272 4.272 11 C 0.251 3.749 12 C -0.403 4.403 13 H 0.089 0.911 14 C 0.061 3.939 15 N -0.696 5.696 16 Si 0.912 3.088 17 H -0.258 1.258 18 H -0.271 1.271 19 H -0.271 1.271 20 N -0.490 5.490 21 C 0.162 3.838 22 C -0.167 4.167 23 C 0.128 3.872 24 N -0.330 5.330 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.176 0.824 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.277 0.723 34 H 0.125 0.875 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.070 10.236 0.004 15.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.115 5.115 3 C -0.091 4.091 4 C -0.226 4.226 5 C -0.077 4.077 6 C -0.161 4.161 7 C 0.065 3.935 8 C -0.285 4.285 9 C -0.057 4.057 10 C -0.294 4.294 11 C 0.128 3.872 12 C -0.433 4.433 13 H 0.107 0.893 14 C -0.166 4.166 15 N -0.316 5.316 16 Si 0.735 3.265 17 H -0.182 1.182 18 H -0.196 1.196 19 H -0.196 1.196 20 N -0.201 5.201 21 C -0.008 4.008 22 C -0.189 4.189 23 C -0.024 4.024 24 N -0.158 5.158 25 H 0.095 0.905 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.193 0.807 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.143 0.857 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.112 8.056 -0.010 14.547 hybrid contribution 0.990 1.300 0.018 1.635 sum -11.122 9.357 0.008 14.534 Atomic orbital electron populations 1.21917 0.74517 1.04574 1.03552 1.48425 1.07001 1.04274 1.51818 1.22434 0.90733 0.92763 1.03206 1.19583 0.92805 0.94033 1.16228 1.20009 0.90128 0.98275 0.99269 1.20701 0.97639 0.93801 1.03999 1.18551 0.92185 0.91861 0.90919 1.19058 0.90988 0.94530 1.23876 1.20684 0.92224 0.97570 0.95185 1.21423 0.96867 0.95599 1.15538 1.18702 0.91988 0.88634 0.87865 1.19816 0.93192 0.91159 1.39130 0.89317 1.26212 0.97853 0.98748 0.93822 1.70160 1.25899 1.09786 1.25713 0.86189 0.81628 0.79820 0.78816 1.18183 1.19574 1.19579 1.68834 0.96461 1.36926 1.17905 1.22871 0.96847 0.89854 0.91206 1.19955 0.87379 0.98969 1.12619 1.20843 0.92036 0.92513 0.96992 1.77790 1.01134 1.03723 1.33192 0.90458 0.89455 0.89040 0.80680 0.86690 0.86220 0.88144 0.88105 0.91153 0.85726 0.85753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.73 11.39 59.85 0.68 1.41 16 2 N -0.34 -4.58 3.96 -67.60 -0.27 -4.85 16 3 C 0.06 0.79 11.50 -16.58 -0.19 0.60 16 4 C -0.22 -3.52 6.32 -105.14 -0.66 -4.18 16 5 C -0.06 -0.86 10.06 -39.46 -0.40 -1.26 16 6 C -0.14 -2.45 9.29 -39.64 -0.37 -2.82 16 7 C 0.07 1.42 5.87 -104.96 -0.62 0.80 16 8 C -0.28 -6.30 5.91 -104.47 -0.62 -6.92 16 9 C -0.03 -0.74 9.44 -39.36 -0.37 -1.11 16 10 C -0.27 -6.47 9.76 -39.16 -0.38 -6.85 16 11 C 0.25 6.69 6.55 -84.98 -0.56 6.13 16 12 C -0.40 -10.36 9.11 -37.92 -0.35 -10.71 16 13 H 0.09 2.10 7.85 -52.48 -0.41 1.69 16 14 C 0.06 1.50 5.50 -17.34 -0.10 1.40 16 15 N -0.70 -17.97 11.44 55.55 0.64 -17.34 16 16 Si 0.91 17.76 29.56 -169.99 -5.02 12.73 16 17 H -0.26 -4.91 7.11 56.52 0.40 -4.50 16 18 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 19 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 20 N -0.49 -13.37 7.83 -10.83 -0.08 -13.45 16 21 C 0.16 3.98 10.58 -17.11 -0.18 3.80 16 22 C -0.17 -3.37 9.50 -38.59 -0.37 -3.74 16 23 C 0.13 2.44 7.47 -83.10 -0.62 1.82 16 24 N -0.33 -5.99 12.56 33.22 0.42 -5.57 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.09 0.38 8.13 -51.93 -0.42 -0.04 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.12 1.87 6.11 -52.49 -0.32 1.55 16 31 H 0.10 1.87 6.20 -52.49 -0.33 1.54 16 32 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 33 H 0.28 6.42 8.29 -40.82 -0.34 6.08 16 34 H 0.13 2.83 6.14 -52.49 -0.32 2.51 16 35 H 0.12 2.50 6.11 -52.49 -0.32 2.18 16 LS Contribution 304.19 15.07 4.58 4.58 Total: -1.00 -31.99 304.19 -8.20 -40.19 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -3.37 Total: 5.31 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -5.09 Total: -21.61 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.70 Total: -41.20 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.02 Total: 12.73 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.99 -8.20 -40.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241600910.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.360 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds