Wall clock time and date at job start Tue Mar 31 2020 01:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34183 * 125.03651 * 2 1 4 4 C 1.38077 * 107.97658 * 179.90308 * 3 2 1 5 5 C 1.41370 * 134.48108 * 180.08966 * 4 3 2 6 6 C 1.35233 * 119.90591 * 180.28508 * 5 4 3 7 7 C 1.40907 * 121.58948 * 0.02562 * 6 5 4 8 8 C 1.47725 * 119.36188 * 179.97438 * 7 6 5 9 9 C 1.40425 * 120.35158 * 0.02562 * 8 7 6 10 10 C 1.36562 * 118.59948 * 179.97438 * 9 8 7 11 11 C 1.40939 * 119.27193 * 0.02562 * 10 9 8 12 12 C 1.40874 * 119.67523 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99596 * 359.97438 * 12 11 10 14 14 C 1.40009 * 120.00044 * 180.02562 * 12 11 10 15 15 N 1.30771 * 120.00210 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99973 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47061 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47022 * 119.99619 * 16 14 12 19 19 H 1.48502 * 109.46903 * 239.99692 * 16 14 12 20 20 N 1.33827 * 120.65502 * 359.97438 * 11 10 9 21 21 C 1.31164 * 121.50588 * 359.70156 * 20 11 10 22 22 C 1.38366 * 121.28081 * 359.97364 * 7 6 5 23 23 C 1.40751 * 119.38506 * 0.02562 * 22 7 6 24 24 N 1.32271 * 134.47106 * 179.97438 * 23 22 7 25 25 H 1.09001 * 109.47060 * 269.72379 * 1 2 3 26 26 H 1.09004 * 109.47073 * 29.71868 * 1 2 3 27 27 H 1.09000 * 109.47212 * 149.71950 * 1 2 3 28 28 H 1.08001 * 126.01017 * 0.03368 * 3 2 1 29 29 H 1.08001 * 120.04237 * 0.31023 * 5 4 3 30 30 H 1.08001 * 119.20588 * 180.02562 * 6 5 4 31 31 H 1.07995 * 120.69921 * 359.97438 * 9 8 7 32 32 H 1.08001 * 120.36782 * 179.97438 * 10 9 8 33 33 H 0.96997 * 120.00209 * 180.02562 * 15 14 12 34 34 H 1.08001 * 119.66390 * 180.30695 * 21 20 11 35 35 H 1.08001 * 120.30830 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2354 1.0987 0.0000 4 6 3.5554 0.6936 0.0022 5 6 4.7983 1.3673 0.0049 6 6 5.9497 0.6580 0.0008 7 6 5.9485 -0.7511 -0.0067 8 6 7.2355 -1.4764 -0.0114 9 6 8.4486 -0.7692 -0.0081 10 6 9.6172 -1.4758 -0.0121 11 6 9.5708 -2.8844 -0.0201 12 6 10.7711 -3.6217 -0.0238 13 1 11.7208 -3.1074 -0.0210 14 6 10.7330 -5.0213 -0.0323 15 7 9.5831 -5.6441 -0.0362 16 14 12.3246 -5.9990 -0.0379 17 1 13.4792 -5.0652 -0.0327 18 1 12.3798 -6.8618 1.1694 19 1 12.3801 -6.8473 -1.2556 20 7 8.3977 -3.5284 -0.0232 21 6 7.2587 -2.8781 -0.0131 22 6 4.7655 -1.4686 -0.0096 23 6 3.5390 -0.7781 -0.0055 24 7 2.2684 -1.1460 -0.0071 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3633 0.8925 -0.5095 27 1 -0.3634 -0.8875 -0.5182 28 1 1.8846 2.1201 0.0005 29 1 4.8281 2.4468 0.0106 30 1 6.8928 1.1842 0.0033 31 1 8.4572 0.3107 -0.0024 32 1 10.5666 -0.9609 -0.0101 33 1 9.5566 -6.6136 -0.0417 34 1 6.3292 -3.4281 -0.0109 35 1 4.7829 -2.5484 -0.0149 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241600910.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:01 Heat of formation + Delta-G solvation = 109.794398 kcal Electronic energy + Delta-G solvation = -19672.160006 eV Core-core repulsion = 16635.759805 eV Total energy + Delta-G solvation = -3036.400202 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.02592 -40.25528 -38.07450 -35.61527 -33.81676 -33.18607 -32.55196 -31.16769 -29.67835 -28.48200 -26.75843 -24.45059 -23.82351 -22.62711 -21.85941 -21.15687 -19.49307 -18.12306 -17.71897 -17.35917 -16.86405 -16.41873 -16.09431 -15.77882 -15.14362 -14.72100 -14.40546 -14.38246 -14.26512 -13.93748 -13.87708 -13.52980 -13.13290 -12.95630 -12.72894 -12.56410 -12.38631 -12.32534 -12.03820 -11.74434 -11.29656 -11.12667 -11.09601 -10.31853 -9.95608 -9.52742 -8.88105 -8.45049 -8.37169 -6.51362 -0.34150 0.55942 1.11209 1.30914 1.40150 1.51483 1.57116 1.63998 1.70597 2.19291 2.73820 3.15782 3.33236 3.81310 3.94307 4.07589 4.16801 4.21500 4.35087 4.38580 4.42551 4.49789 4.58978 4.69275 4.73191 4.83189 4.92470 4.98782 5.13033 5.27565 5.46679 5.47775 5.60142 5.70100 5.78285 6.03625 6.06623 6.09274 6.17466 6.27055 6.64293 6.77777 6.88414 8.11602 8.35327 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.040053 B = 0.003394 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.900222 B = 8248.229875 C = 8931.983065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.332 5.332 3 C 0.104 3.896 4 C -0.249 4.249 5 C -0.022 4.022 6 C -0.176 4.176 7 C 0.057 3.943 8 C -0.270 4.270 9 C -0.032 4.032 10 C -0.284 4.284 11 C 0.217 3.783 12 C -0.443 4.443 13 H 0.099 0.901 14 C 0.016 3.984 15 N -0.746 5.746 16 Si 0.995 3.005 17 H -0.248 1.248 18 H -0.266 1.266 19 H -0.266 1.266 20 N -0.525 5.525 21 C 0.132 3.868 22 C -0.186 4.186 23 C 0.095 3.905 24 N -0.377 5.377 25 H 0.096 0.904 26 H 0.133 0.867 27 H 0.087 0.913 28 H 0.241 0.759 29 H 0.165 0.835 30 H 0.136 0.864 31 H 0.141 0.859 32 H 0.120 0.880 33 H 0.282 0.718 34 H 0.124 0.876 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.935 14.223 0.009 19.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.106 5.106 3 C -0.053 4.053 4 C -0.258 4.258 5 C -0.042 4.042 6 C -0.196 4.196 7 C 0.052 3.948 8 C -0.276 4.276 9 C -0.055 4.055 10 C -0.306 4.306 11 C 0.093 3.907 12 C -0.473 4.473 13 H 0.117 0.883 14 C -0.207 4.207 15 N -0.367 5.367 16 Si 0.814 3.186 17 H -0.171 1.171 18 H -0.191 1.191 19 H -0.191 1.191 20 N -0.238 5.238 21 C -0.035 4.035 22 C -0.208 4.208 23 C -0.055 4.055 24 N -0.207 5.207 25 H 0.114 0.886 26 H 0.151 0.849 27 H 0.106 0.894 28 H 0.257 0.743 29 H 0.182 0.818 30 H 0.154 0.846 31 H 0.159 0.841 32 H 0.138 0.862 33 H 0.093 0.907 34 H 0.142 0.858 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.027 12.043 -0.004 18.487 hybrid contribution 1.019 0.330 0.021 1.071 sum -13.008 12.373 0.017 17.953 Atomic orbital electron populations 1.22463 0.71047 1.06758 1.05457 1.48965 1.08983 1.03519 1.49093 1.23398 0.88981 0.94795 0.98116 1.20057 0.95115 0.92467 1.18189 1.20475 0.88710 1.00426 0.94611 1.20778 0.99563 0.92116 1.07104 1.18579 0.90581 0.93624 0.92063 1.19380 0.92962 0.93876 1.21384 1.21065 0.91088 0.99493 0.93834 1.21663 0.98498 0.94792 1.15676 1.19206 0.92242 0.90345 0.88887 1.20167 0.93363 0.92368 1.41358 0.88255 1.27206 1.01552 0.99391 0.92532 1.70274 1.28521 1.10297 1.27600 0.84977 0.76854 0.77960 0.78838 1.17080 1.19066 1.19077 1.68755 0.97346 1.38405 1.19279 1.23058 0.96430 0.91392 0.92635 1.19938 0.88966 0.98227 1.13675 1.20887 0.91885 0.94648 0.98118 1.77716 1.01372 1.06592 1.35006 0.88586 0.84891 0.89378 0.74316 0.81788 0.84581 0.84149 0.86186 0.90714 0.85835 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 11.39 127.77 1.45 2.32 16 2 N -0.33 -7.65 3.96 -367.79 -1.45 -9.11 16 3 C 0.10 2.02 11.50 84.30 0.97 2.99 16 4 C -0.25 -7.21 6.32 -20.20 -0.13 -7.34 16 5 C -0.02 -0.59 10.06 22.35 0.22 -0.36 16 6 C -0.18 -5.77 9.29 22.23 0.21 -5.56 16 7 C 0.06 2.34 5.87 -20.09 -0.12 2.22 16 8 C -0.27 -12.77 5.91 -19.76 -0.12 -12.88 16 9 C -0.03 -1.41 9.44 22.41 0.21 -1.19 16 10 C -0.28 -13.90 9.76 22.54 0.22 -13.68 16 11 C 0.22 12.22 6.55 40.15 0.26 12.49 16 12 C -0.44 -23.88 9.11 23.34 0.21 -23.67 16 13 H 0.10 4.88 7.85 -2.91 -0.02 4.86 16 14 C 0.02 0.82 5.50 85.28 0.47 1.29 16 15 N -0.75 -41.06 11.44 21.84 0.25 -40.81 16 16 Si 0.99 37.67 29.56 68.60 2.03 39.69 16 17 H -0.25 -8.83 7.11 99.48 0.71 -8.12 16 18 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 19 H -0.27 -9.74 7.11 99.48 0.71 -9.04 16 20 N -0.53 -30.86 7.83 -188.18 -1.47 -32.34 16 21 C 0.13 7.02 10.58 85.27 0.90 7.92 16 22 C -0.19 -7.92 9.50 22.91 0.22 -7.70 16 23 C 0.09 3.63 7.47 42.04 0.31 3.94 16 24 N -0.38 -13.45 12.56 -48.82 -0.61 -14.07 16 25 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.13 0.27 8.13 -2.38 -0.02 0.25 16 27 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.24 1.46 8.06 -2.91 -0.02 1.44 16 29 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 30 H 0.14 3.87 6.11 -2.91 -0.02 3.85 16 31 H 0.14 4.97 6.20 -2.91 -0.02 4.95 16 32 H 0.12 5.23 8.06 -2.91 -0.02 5.21 16 33 H 0.28 13.94 8.29 -92.71 -0.77 13.17 16 34 H 0.12 6.31 6.14 -2.91 -0.02 6.29 16 35 H 0.10 4.55 6.11 -2.91 -0.02 4.53 16 Total: -1.00 -78.23 304.19 5.17 -73.07 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 1.13 Total: 22.79 kcal Atomic # 6 Polarization: -44.53 SS G_CDS: 5.30 Total: -39.23 kcal Atomic # 7 Polarization: -93.03 SS G_CDS: -3.29 Total: -96.32 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 2.03 Total: 39.69 kcal Total: -78.23 5.17 -73.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241600910.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.860 kcal (2) G-P(sol) polarization free energy of solvation -78.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds