Wall clock time and date at job start Tue Mar 31 2020 01:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34190 * 125.03393 * 2 1 4 4 C 1.38075 * 107.97602 * 180.02562 * 3 2 1 5 5 C 1.41380 * 134.46816 * 180.02562 * 4 3 2 6 6 C 1.35223 * 119.91348 * 180.02562 * 5 4 3 7 7 C 1.40950 * 121.57852 * 359.74225 * 6 5 4 8 8 C 1.47609 * 119.36282 * 180.29111 * 7 6 5 9 9 C 1.39464 * 120.79715 * 130.23343 * 8 7 6 10 10 N 1.31608 * 120.63938 * 180.02562 * 9 8 7 11 11 C 1.32289 * 122.51819 * 359.96913 * 10 9 8 12 12 C 1.36380 * 121.54708 * 0.02988 * 11 10 9 13 13 C 1.41163 * 119.11993 * 359.69678 * 12 11 10 14 14 C 1.40805 * 121.11466 * 180.28045 * 13 12 11 15 15 H 1.08005 * 119.99957 * 154.72585 * 14 13 12 16 16 C 1.40095 * 119.99858 * 334.71996 * 14 13 12 17 17 N 1.30733 * 120.00247 * 344.71593 * 16 14 13 18 18 Si 1.86799 * 119.99694 * 164.71580 * 16 14 13 19 19 H 1.48499 * 109.47497 * 60.00194 * 18 16 14 20 20 H 1.48498 * 109.46962 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47384 * 299.99907 * 18 16 14 22 22 C 1.38424 * 121.27283 * 0.52042 * 7 6 5 23 23 C 1.40733 * 119.37498 * 359.49450 * 22 7 6 24 24 N 1.32282 * 134.46075 * 180.24713 * 23 22 7 25 25 H 1.09002 * 109.47283 * 90.00048 * 1 2 3 26 26 H 1.09000 * 109.47177 * 209.99918 * 1 2 3 27 27 H 1.09003 * 109.47101 * 330.00246 * 1 2 3 28 28 H 1.08000 * 126.01439 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.04540 * 359.97229 * 5 4 3 30 30 H 1.08004 * 119.20926 * 180.02562 * 6 5 4 31 31 H 1.08000 * 119.68223 * 359.97438 * 9 8 7 32 32 H 1.08006 * 119.21918 * 180.02562 * 11 10 9 33 33 H 1.08006 * 120.43497 * 179.97438 * 12 11 10 34 34 H 0.96996 * 119.99793 * 179.97438 * 17 16 14 35 35 H 1.08000 * 120.31449 * 179.76721 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2353 1.0988 0.0000 4 6 3.5553 0.6937 -0.0006 5 6 4.7981 1.3678 -0.0004 6 6 5.9497 0.6590 -0.0017 7 6 5.9488 -0.7505 0.0022 8 6 7.2349 -1.4750 0.0071 9 6 7.4751 -2.4972 0.9250 10 7 8.6231 -3.1408 0.9270 11 6 9.5961 -2.8619 0.0753 12 6 9.4640 -1.8808 -0.8628 13 6 8.2572 -1.1514 -0.9286 14 6 8.0734 -0.1337 -1.8842 15 1 7.0771 0.1303 -2.2070 16 6 9.1827 0.5365 -2.4160 17 7 10.3470 0.4416 -1.8290 18 14 8.9983 1.5656 -3.9640 19 1 8.0073 2.6455 -3.7253 20 1 10.3095 2.1658 -4.3184 21 1 8.5316 0.7031 -5.0792 22 6 4.7653 -1.4684 -0.0033 23 6 3.5391 -0.7779 -0.0020 24 7 2.2685 -1.1459 -0.0019 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.8846 2.1202 -0.0004 29 1 4.8277 2.4474 -0.0001 30 1 6.8927 1.1855 -0.0011 31 1 6.7120 -2.7626 1.6418 32 1 10.5169 -3.4244 0.1241 33 1 10.2703 -1.6679 -1.5491 34 1 11.1151 0.9053 -2.1975 35 1 4.7828 -2.5483 -0.0040 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241602413.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:47 Heat of formation + Delta-G solvation = 118.617054 kcal Electronic energy + Delta-G solvation = -20317.212015 eV Core-core repulsion = 17281.194392 eV Total energy + Delta-G solvation = -3036.017622 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.76737 -38.55228 -36.53794 -34.24675 -32.64277 -31.79521 -30.44259 -29.39275 -28.16451 -26.71016 -25.82928 -22.92768 -21.81499 -21.37179 -20.33322 -19.77707 -17.63534 -16.73672 -16.41085 -15.58789 -15.38599 -15.15013 -14.52944 -14.38320 -13.67756 -13.51914 -13.13690 -12.93041 -12.85689 -12.69287 -12.33811 -12.20412 -11.51023 -11.43631 -11.31716 -11.13538 -11.05718 -10.72187 -10.34541 -9.86834 -9.79750 -9.78887 -9.49818 -8.38890 -8.03040 -7.85893 -7.41742 -7.05752 -6.88269 -4.65809 1.06164 2.21842 2.60528 2.73700 2.85874 2.97059 2.98132 3.00480 3.22068 3.78319 4.44404 4.51279 4.57527 4.77798 4.98724 5.15180 5.24714 5.47729 5.59222 5.70198 5.81307 5.95503 6.01873 6.16840 6.30486 6.46212 6.72534 6.81359 6.85082 7.00397 7.05813 7.12451 7.17658 7.32595 7.38442 7.50620 7.58655 7.81790 8.03328 8.08593 8.38166 8.62770 8.67307 9.60041 9.93657 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016978 B = 0.005725 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.799863 B = 4889.291152 C = 6202.889103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.341 5.341 3 C 0.056 3.944 4 C -0.201 4.201 5 C -0.076 4.076 6 C -0.106 4.106 7 C 0.072 3.928 8 C -0.240 4.240 9 C 0.135 3.865 10 N -0.578 5.578 11 C 0.081 3.919 12 C -0.207 4.207 13 C 0.147 3.853 14 C -0.437 4.437 15 H 0.088 0.912 16 C 0.078 3.922 17 N -0.777 5.777 18 Si 0.910 3.090 19 H -0.261 1.261 20 H -0.276 1.276 21 H -0.261 1.261 22 C -0.143 4.143 23 C 0.117 3.883 24 N -0.327 5.327 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.176 0.824 29 H 0.115 0.885 30 H 0.131 0.869 31 H 0.123 0.877 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.286 0.714 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.965 5.444 0.303 13.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.116 5.116 3 C -0.098 4.098 4 C -0.211 4.211 5 C -0.096 4.096 6 C -0.125 4.125 7 C 0.067 3.933 8 C -0.246 4.246 9 C -0.024 4.024 10 N -0.293 5.293 11 C -0.066 4.066 12 C -0.229 4.229 13 C 0.139 3.861 14 C -0.467 4.467 15 H 0.106 0.894 16 C -0.143 4.143 17 N -0.401 5.401 18 Si 0.734 3.266 19 H -0.185 1.185 20 H -0.201 1.201 21 H -0.186 1.186 22 C -0.164 4.164 23 C -0.035 4.035 24 N -0.155 5.155 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.105 0.895 28 H 0.193 0.807 29 H 0.133 0.867 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.144 0.856 34 H 0.097 0.903 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.545 3.815 0.895 13.142 hybrid contribution 0.338 1.978 -1.388 2.440 sum -12.207 5.793 -0.493 13.521 Atomic orbital electron populations 1.21902 0.74584 1.04514 1.03495 1.48379 1.06919 1.04250 1.52058 1.22422 0.90734 0.92713 1.03902 1.19620 0.92875 0.93817 1.14796 1.20039 0.89982 0.98450 1.01109 1.20883 0.98062 0.93703 0.99868 1.18468 0.91538 0.92248 0.91056 1.19564 0.96375 1.05131 1.03497 1.22169 0.93710 0.91005 0.95559 1.67331 1.02252 1.31503 1.28180 1.21721 0.96182 0.95955 0.92738 1.21904 1.00460 0.98188 1.02377 1.17717 0.89598 0.89862 0.88928 1.19588 0.94354 1.14381 1.18335 0.89385 1.26029 0.94443 0.96327 0.97528 1.69755 1.01201 1.33598 1.35568 0.86308 0.78686 0.80139 0.81483 1.18545 1.20115 1.18562 1.20164 0.87521 0.98709 1.10025 1.20844 0.91976 0.92781 0.97914 1.77736 1.01150 1.03985 1.32603 0.90530 0.89121 0.89454 0.80676 0.86694 0.85141 0.85932 0.86447 0.85587 0.90269 0.86121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.78 11.39 59.85 0.68 1.46 16 2 N -0.34 -4.78 3.96 -67.61 -0.27 -5.05 16 3 C 0.06 0.76 11.50 -16.58 -0.19 0.57 16 4 C -0.20 -3.51 6.32 -105.14 -0.66 -4.17 16 5 C -0.08 -1.31 10.06 -39.46 -0.40 -1.71 16 6 C -0.11 -2.12 7.88 -39.63 -0.31 -2.44 16 7 C 0.07 1.56 5.00 -104.98 -0.52 1.04 16 8 C -0.24 -5.71 5.50 -104.05 -0.57 -6.29 16 9 C 0.13 3.15 10.66 -17.19 -0.18 2.96 16 10 N -0.58 -14.07 10.32 -13.35 -0.14 -14.21 16 11 C 0.08 1.93 11.08 -18.02 -0.20 1.73 16 12 C -0.21 -5.18 8.72 -39.14 -0.34 -5.52 16 13 C 0.15 3.72 5.58 -106.25 -0.59 3.12 16 14 C -0.44 -10.70 7.22 -37.92 -0.27 -10.97 16 15 H 0.09 2.14 6.70 -52.48 -0.35 1.79 16 16 C 0.08 1.80 5.22 -17.32 -0.09 1.71 16 17 N -0.78 -18.49 10.92 55.55 0.61 -17.89 16 18 Si 0.91 17.51 29.59 -169.99 -5.03 12.48 16 19 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 20 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 21 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 22 C -0.14 -2.95 9.56 -38.57 -0.37 -3.32 16 23 C 0.12 2.30 7.47 -83.10 -0.62 1.68 16 24 N -0.33 -6.02 12.56 33.21 0.42 -5.61 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 0.43 8.13 -51.93 -0.42 0.01 16 28 H 0.18 1.55 8.06 -52.49 -0.42 1.12 16 29 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 30 H 0.13 2.73 7.29 -52.48 -0.38 2.34 16 31 H 0.12 2.58 8.03 -52.49 -0.42 2.16 16 32 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 33 H 0.13 3.17 6.24 -52.48 -0.33 2.84 16 34 H 0.29 6.19 8.29 -40.82 -0.34 5.86 16 35 H 0.12 2.44 8.01 -52.49 -0.42 2.02 16 LS Contribution 304.96 15.07 4.60 4.60 Total: -1.00 -30.00 304.96 -8.04 -38.04 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -3.57 Total: 7.76 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -4.65 Total: -20.13 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.62 Total: -42.75 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.00 -8.04 -38.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241602413.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.656 kcal (2) G-P(sol) polarization free energy of solvation -29.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds