Wall clock time and date at job start Tue Mar 31 2020 01:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34190 * 125.03393 * 2 1 4 4 C 1.38075 * 107.97602 * 180.02562 * 3 2 1 5 5 C 1.41380 * 134.46816 * 180.02562 * 4 3 2 6 6 C 1.35223 * 119.91348 * 180.02562 * 5 4 3 7 7 C 1.40950 * 121.57852 * 359.74225 * 6 5 4 8 8 C 1.47609 * 119.36282 * 180.29111 * 7 6 5 9 9 C 1.39464 * 120.79715 * 130.23343 * 8 7 6 10 10 N 1.31608 * 120.63938 * 180.02562 * 9 8 7 11 11 C 1.32289 * 122.51819 * 359.96913 * 10 9 8 12 12 C 1.36380 * 121.54708 * 0.02988 * 11 10 9 13 13 C 1.41163 * 119.11993 * 359.69678 * 12 11 10 14 14 C 1.40805 * 121.11466 * 180.28045 * 13 12 11 15 15 H 1.08005 * 119.99957 * 154.72585 * 14 13 12 16 16 C 1.40095 * 119.99858 * 334.71996 * 14 13 12 17 17 N 1.30733 * 120.00247 * 344.71593 * 16 14 13 18 18 Si 1.86799 * 119.99694 * 164.71580 * 16 14 13 19 19 H 1.48499 * 109.47497 * 60.00194 * 18 16 14 20 20 H 1.48498 * 109.46962 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47384 * 299.99907 * 18 16 14 22 22 C 1.38424 * 121.27283 * 0.52042 * 7 6 5 23 23 C 1.40733 * 119.37498 * 359.49450 * 22 7 6 24 24 N 1.32282 * 134.46075 * 180.24713 * 23 22 7 25 25 H 1.09002 * 109.47283 * 90.00048 * 1 2 3 26 26 H 1.09000 * 109.47177 * 209.99918 * 1 2 3 27 27 H 1.09003 * 109.47101 * 330.00246 * 1 2 3 28 28 H 1.08000 * 126.01439 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.04540 * 359.97229 * 5 4 3 30 30 H 1.08004 * 119.20926 * 180.02562 * 6 5 4 31 31 H 1.08000 * 119.68223 * 359.97438 * 9 8 7 32 32 H 1.08006 * 119.21918 * 180.02562 * 11 10 9 33 33 H 1.08006 * 120.43497 * 179.97438 * 12 11 10 34 34 H 0.96996 * 119.99793 * 179.97438 * 17 16 14 35 35 H 1.08000 * 120.31449 * 179.76721 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2353 1.0988 0.0000 4 6 3.5553 0.6937 -0.0006 5 6 4.7981 1.3678 -0.0004 6 6 5.9497 0.6590 -0.0017 7 6 5.9488 -0.7505 0.0022 8 6 7.2349 -1.4750 0.0071 9 6 7.4751 -2.4972 0.9250 10 7 8.6231 -3.1408 0.9270 11 6 9.5961 -2.8619 0.0753 12 6 9.4640 -1.8808 -0.8628 13 6 8.2572 -1.1514 -0.9286 14 6 8.0734 -0.1337 -1.8842 15 1 7.0771 0.1303 -2.2070 16 6 9.1827 0.5365 -2.4160 17 7 10.3470 0.4416 -1.8290 18 14 8.9983 1.5656 -3.9640 19 1 8.0073 2.6455 -3.7253 20 1 10.3095 2.1658 -4.3184 21 1 8.5316 0.7031 -5.0792 22 6 4.7653 -1.4684 -0.0033 23 6 3.5391 -0.7779 -0.0020 24 7 2.2685 -1.1459 -0.0019 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.8846 2.1202 -0.0004 29 1 4.8277 2.4474 -0.0001 30 1 6.8927 1.1855 -0.0011 31 1 6.7120 -2.7626 1.6418 32 1 10.5169 -3.4244 0.1241 33 1 10.2703 -1.6679 -1.5491 34 1 11.1151 0.9053 -2.1975 35 1 4.7828 -2.5483 -0.0040 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241602413.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:46 Heat of formation + Delta-G solvation = 101.398811 kcal Electronic energy + Delta-G solvation = -20317.958654 eV Core-core repulsion = 17281.194392 eV Total energy + Delta-G solvation = -3036.764261 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.02251 -40.33044 -37.98749 -36.04716 -33.91178 -33.23840 -32.21084 -30.88077 -29.58153 -28.12933 -27.42681 -24.38908 -23.46748 -22.90568 -21.82514 -21.15989 -19.46080 -18.03922 -17.68676 -17.28025 -16.69626 -16.40872 -16.26445 -16.07625 -15.07517 -14.94342 -14.65243 -14.38237 -14.07087 -13.91149 -13.86490 -13.59140 -13.21949 -13.04173 -12.84944 -12.65702 -12.48288 -12.10940 -11.92709 -11.66540 -11.25404 -11.13970 -11.10125 -10.03685 -9.90585 -9.67013 -9.00924 -8.69261 -8.41115 -6.51708 -0.27026 0.65144 0.99525 1.20760 1.39865 1.50934 1.58003 1.60771 1.64854 2.18081 2.76155 3.02981 3.34580 3.72998 3.82376 3.99403 4.21417 4.31092 4.33708 4.44166 4.48334 4.58147 4.64261 4.71106 4.73488 4.93168 5.01181 5.02126 5.22795 5.34429 5.42513 5.52363 5.62715 5.72641 5.85784 6.02825 6.06896 6.18037 6.21042 6.52368 6.75732 6.78844 6.82330 7.71480 8.20949 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016978 B = 0.005725 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.799863 B = 4889.291152 C = 6202.889103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.329 5.329 3 C 0.099 3.901 4 C -0.237 4.237 5 C -0.041 4.041 6 C -0.145 4.145 7 C 0.057 3.943 8 C -0.245 4.245 9 C 0.122 3.878 10 N -0.592 5.592 11 C 0.076 3.924 12 C -0.228 4.228 13 C 0.119 3.881 14 C -0.452 4.452 15 H 0.083 0.917 16 C 0.043 3.957 17 N -0.803 5.803 18 Si 0.978 3.022 19 H -0.253 1.253 20 H -0.264 1.264 21 H -0.264 1.264 22 C -0.155 4.155 23 C 0.090 3.910 24 N -0.366 5.366 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.132 0.868 28 H 0.238 0.762 29 H 0.153 0.847 30 H 0.112 0.888 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.119 0.881 34 H 0.295 0.705 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.001 8.328 -0.304 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.103 5.103 3 C -0.058 4.058 4 C -0.247 4.247 5 C -0.061 4.061 6 C -0.165 4.165 7 C 0.052 3.948 8 C -0.250 4.250 9 C -0.036 4.036 10 N -0.307 5.307 11 C -0.072 4.072 12 C -0.250 4.250 13 C 0.111 3.889 14 C -0.481 4.481 15 H 0.101 0.899 16 C -0.176 4.176 17 N -0.427 5.427 18 Si 0.799 3.201 19 H -0.177 1.177 20 H -0.188 1.188 21 H -0.189 1.189 22 C -0.177 4.177 23 C -0.060 4.060 24 N -0.195 5.195 25 H 0.114 0.886 26 H 0.110 0.890 27 H 0.150 0.850 28 H 0.254 0.746 29 H 0.171 0.829 30 H 0.130 0.870 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.137 0.863 34 H 0.106 0.894 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.609 6.664 0.312 16.974 hybrid contribution 0.965 1.156 -1.149 1.894 sum -14.643 7.819 -0.838 16.621 Atomic orbital electron populations 1.22474 0.70899 1.06844 1.05481 1.48944 1.08976 1.03405 1.48975 1.23312 0.88892 0.94793 0.98787 1.19966 0.94725 0.92718 1.17263 1.20356 0.89012 1.00049 0.96701 1.20667 0.98550 0.92973 1.04300 1.18414 0.90659 0.93144 0.92555 1.19876 0.97314 1.05018 1.02836 1.22472 0.93952 0.91143 0.96022 1.67376 1.02681 1.32056 1.28574 1.22063 0.96969 0.95850 0.92271 1.21914 1.00616 0.99264 1.03250 1.18097 0.90289 0.90700 0.89802 1.19683 0.94771 1.14812 1.18866 0.89883 1.26806 0.93671 0.97072 1.00020 1.69790 1.01974 1.34184 1.36783 0.85287 0.79228 0.78499 0.77129 1.17679 1.18777 1.18881 1.20056 0.88450 0.98184 1.11011 1.20856 0.91995 0.94356 0.98810 1.77679 1.01048 1.06472 1.34349 0.88613 0.89045 0.85007 0.74588 0.82914 0.87034 0.84349 0.84041 0.86310 0.89372 0.87428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 11.39 127.77 1.45 2.36 16 2 N -0.33 -7.87 3.96 -367.81 -1.46 -9.33 16 3 C 0.10 2.15 11.50 84.29 0.97 3.12 16 4 C -0.24 -7.66 6.32 -20.20 -0.13 -7.79 16 5 C -0.04 -1.36 10.06 22.35 0.22 -1.13 16 6 C -0.15 -5.99 7.88 22.24 0.18 -5.81 16 7 C 0.06 2.61 5.00 -20.10 -0.10 2.51 16 8 C -0.25 -12.37 5.50 -19.49 -0.11 -12.48 16 9 C 0.12 5.99 10.66 85.02 0.91 6.90 16 10 N -0.59 -29.95 10.32 -196.14 -2.02 -31.98 16 11 C 0.08 3.77 11.08 84.19 0.93 4.70 16 12 C -0.23 -11.99 8.72 22.55 0.20 -11.80 16 13 C 0.12 6.36 5.58 -20.92 -0.12 6.24 16 14 C -0.45 -23.04 7.22 23.35 0.17 -22.87 16 15 H 0.08 4.21 6.70 -2.91 -0.02 4.19 16 16 C 0.04 2.03 5.22 85.31 0.45 2.48 16 17 N -0.80 -39.10 10.92 21.85 0.24 -38.86 16 18 Si 0.98 35.73 29.59 68.60 2.03 37.76 16 19 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 20 H -0.26 -9.01 7.11 99.48 0.71 -8.31 16 21 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 22 C -0.16 -6.75 9.56 22.92 0.22 -6.53 16 23 C 0.09 3.55 7.47 42.03 0.31 3.86 16 24 N -0.37 -13.06 12.56 -48.83 -0.61 -13.67 16 25 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.13 0.37 8.13 -2.39 -0.02 0.35 16 28 H 0.24 2.15 8.06 -2.91 -0.02 2.12 16 29 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 30 H 0.11 4.91 7.29 -2.91 -0.02 4.88 16 31 H 0.14 6.16 8.03 -2.91 -0.02 6.14 16 32 H 0.14 6.10 8.06 -2.91 -0.02 6.08 16 33 H 0.12 6.29 6.24 -2.91 -0.02 6.27 16 34 H 0.30 12.90 8.29 -92.71 -0.77 12.13 16 35 H 0.11 4.72 8.01 -2.91 -0.02 4.70 16 Total: -1.00 -70.23 304.96 4.85 -65.38 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 1.12 Total: 26.94 kcal Atomic # 6 Polarization: -41.79 SS G_CDS: 5.55 Total: -36.24 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -3.85 Total: -93.84 kcal Atomic # 14 Polarization: 35.73 SS G_CDS: 2.03 Total: 37.76 kcal Total: -70.23 4.85 -65.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241602413.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.776 kcal (2) G-P(sol) polarization free energy of solvation -70.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds