Wall clock time and date at job start Tue Mar 31 2020 01:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34030 * 125.02465 * 2 1 4 4 C 1.38193 * 107.94883 * 179.89986 * 3 2 1 5 5 C 1.41255 * 134.55060 * 180.09142 * 4 3 2 6 6 C 1.35343 * 119.84132 * 180.31405 * 5 4 3 7 7 C 1.40746 * 121.60951 * 359.97438 * 6 5 4 8 8 C 1.48298 * 119.31206 * 180.02562 * 7 6 5 9 9 C 1.40082 * 120.82940 * 179.70045 * 8 7 6 10 10 C 1.38476 * 119.42230 * 179.77125 * 9 8 7 11 11 N 1.31494 * 121.14895 * 0.52040 * 10 9 8 12 12 C 1.33657 * 121.80741 * 359.73481 * 11 10 9 13 13 C 1.41429 * 119.77616 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99686 * 179.97438 * 13 12 11 15 15 C 1.40030 * 120.00136 * 359.97419 * 13 12 11 16 16 N 1.30734 * 120.00041 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99932 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47003 * 59.99980 * 17 15 13 19 19 H 1.48496 * 109.46982 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47000 * 299.99705 * 17 15 13 21 21 C 1.39373 * 120.82116 * 359.97438 * 8 7 6 22 22 C 1.37758 * 121.38076 * 359.97438 * 7 6 5 23 23 C 1.40930 * 119.41823 * 0.02562 * 22 7 6 24 24 N 1.32161 * 134.52799 * 179.97438 * 23 22 7 25 25 H 1.09001 * 109.47060 * 269.72375 * 1 2 3 26 26 H 1.09004 * 109.47073 * 29.71864 * 1 2 3 27 27 H 1.09000 * 109.47212 * 149.71946 * 1 2 3 28 28 H 1.08002 * 126.02182 * 0.02562 * 3 2 1 29 29 H 1.07996 * 120.07930 * 0.32659 * 5 4 3 30 30 H 1.08001 * 119.19642 * 180.02562 * 6 5 4 31 31 H 1.08003 * 120.28806 * 0.02562 * 9 8 7 32 32 H 1.08000 * 119.42208 * 180.27479 * 10 9 8 33 33 H 0.97002 * 120.00308 * 180.02562 * 16 15 13 34 34 H 1.08000 * 120.58986 * 0.02562 * 21 8 7 35 35 H 1.08000 * 120.29429 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2343 1.0976 0.0000 4 6 3.5553 0.6918 0.0023 5 6 4.7982 1.3631 0.0050 6 6 5.9486 0.6502 0.0004 7 6 5.9443 -0.7573 -0.0066 8 6 7.2352 -1.4872 -0.0109 9 6 7.2680 -2.8876 -0.0115 10 6 8.4897 -3.5394 -0.0204 11 7 9.6196 -2.8667 -0.0179 12 6 9.6438 -1.5304 -0.0121 13 6 10.8839 -0.8504 -0.0102 14 1 10.9076 0.2293 -0.0059 15 6 12.0809 -1.5771 -0.0139 16 7 12.0521 -2.8841 -0.0195 17 14 13.7188 -0.6788 -0.0106 18 1 13.8167 0.1677 1.2055 19 1 14.8259 -1.6684 -0.0160 20 1 13.8157 0.1782 -1.2195 21 6 8.4459 -0.7969 -0.0086 22 6 4.7660 -1.4710 -0.0085 23 6 3.5380 -0.7797 -0.0039 24 7 2.2681 -1.1461 -0.0045 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3633 0.8925 -0.5095 27 1 -0.3634 -0.8875 -0.5182 28 1 1.8835 2.1190 0.0004 29 1 4.8303 2.4425 0.0110 30 1 6.8930 1.1741 0.0029 31 1 6.3484 -3.4541 -0.0094 32 1 8.5150 -4.6191 -0.0254 33 1 12.8813 -3.3875 -0.0217 34 1 8.4629 0.2830 -0.0032 35 1 4.7832 -2.5508 -0.0135 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241603435.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:31 Heat of formation + Delta-G solvation = 132.175590 kcal Electronic energy + Delta-G solvation = -19688.685285 eV Core-core repulsion = 16653.255604 eV Total energy + Delta-G solvation = -3035.429680 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.08365 -38.47377 -36.82818 -33.69626 -32.85096 -32.08999 -30.11971 -29.83533 -28.48975 -26.84148 -25.66043 -23.05747 -22.48584 -21.13146 -20.43584 -20.03720 -17.57138 -16.94013 -16.43821 -15.81925 -15.63232 -15.10203 -14.37610 -14.19613 -13.88897 -13.54052 -13.30681 -13.27927 -13.08899 -12.57513 -12.30242 -12.22212 -11.68766 -11.38882 -11.38403 -11.07028 -10.97133 -10.70752 -10.45353 -10.12238 -10.07080 -9.72303 -9.41924 -8.90256 -7.66785 -7.63639 -7.55471 -7.20971 -6.38302 -4.51019 0.73603 1.84779 2.35574 2.59566 2.79021 3.09850 3.11861 3.12809 3.24968 3.96040 4.20515 4.30855 4.54424 4.81193 4.81777 4.89650 5.08816 5.15571 5.39592 5.50530 5.62719 5.83633 5.94229 5.94356 6.11792 6.28474 6.56621 6.66162 6.69523 6.74868 6.83459 6.89730 7.02963 7.15200 7.18617 7.35748 7.54840 7.74453 7.79060 8.02181 8.23430 8.66910 8.92420 10.12862 10.33831 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.041590 B = 0.003438 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.083058 B = 8141.912255 C = 8799.849183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.334 5.334 3 C 0.064 3.936 4 C -0.205 4.205 5 C -0.059 4.059 6 C -0.130 4.130 7 C 0.024 3.976 8 C -0.006 4.006 9 C -0.300 4.300 10 C 0.123 3.877 11 N -0.482 5.482 12 C 0.254 3.746 13 C -0.433 4.433 14 H 0.083 0.917 15 C 0.069 3.931 16 N -0.716 5.716 17 Si 0.907 3.093 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.265 1.265 21 C -0.248 4.248 22 C -0.113 4.113 23 C 0.111 3.889 24 N -0.318 5.318 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.181 0.819 29 H 0.121 0.879 30 H 0.129 0.871 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.273 0.727 34 H 0.105 0.895 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.242 7.974 -0.022 18.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.108 5.108 3 C -0.091 4.091 4 C -0.214 4.214 5 C -0.080 4.080 6 C -0.149 4.149 7 C 0.020 3.980 8 C -0.012 4.012 9 C -0.323 4.323 10 C -0.042 4.042 11 N -0.195 5.195 12 C 0.129 3.871 13 C -0.464 4.464 14 H 0.101 0.899 15 C -0.156 4.156 16 N -0.338 5.338 17 Si 0.731 3.269 18 H -0.189 1.189 19 H -0.203 1.203 20 H -0.189 1.189 21 C -0.271 4.271 22 C -0.135 4.135 23 C -0.041 4.041 24 N -0.146 5.146 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.198 0.802 29 H 0.139 0.861 30 H 0.147 0.853 31 H 0.117 0.883 32 H 0.137 0.863 33 H 0.084 0.916 34 H 0.123 0.877 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.316 6.322 -0.027 17.498 hybrid contribution 0.239 1.506 0.019 1.525 sum -16.077 7.828 -0.008 17.882 Atomic orbital electron populations 1.21987 0.74122 1.04841 1.03827 1.48436 1.07236 1.04218 1.50935 1.22501 0.90602 0.92945 1.03060 1.19644 0.93000 0.93770 1.15023 1.20062 0.89852 0.98686 0.99354 1.20774 0.98299 0.93438 1.02414 1.18777 0.92399 0.92603 0.94238 1.18609 0.90618 0.93086 0.98865 1.21403 0.98166 0.93425 1.19300 1.22459 0.88641 0.98818 0.94252 1.68722 1.26046 1.08086 1.16598 1.18553 0.91838 0.88202 0.88520 1.19577 0.89346 0.94231 1.43254 0.89850 1.26060 1.01091 0.94846 0.93629 1.70122 1.28569 1.06466 1.28605 0.86398 0.80615 0.79983 0.79874 1.18933 1.20251 1.18938 1.21901 0.92443 0.98717 1.14044 1.20148 0.87417 0.99481 1.06425 1.20871 0.92084 0.92825 0.98319 1.77735 1.01097 1.04023 1.31748 0.90178 0.89165 0.88864 0.80249 0.86132 0.85301 0.88290 0.86256 0.91562 0.87727 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 11.39 59.85 0.68 1.28 16 2 N -0.33 -4.04 3.95 -67.61 -0.27 -4.31 16 3 C 0.06 0.73 11.50 -16.61 -0.19 0.53 16 4 C -0.20 -3.10 6.32 -105.15 -0.66 -3.77 16 5 C -0.06 -0.87 10.06 -39.47 -0.40 -1.26 16 6 C -0.13 -2.24 9.30 -39.67 -0.37 -2.60 16 7 C 0.02 0.48 5.86 -104.99 -0.62 -0.13 16 8 C -0.01 -0.13 5.90 -104.65 -0.62 -0.75 16 9 C -0.30 -6.85 9.49 -38.80 -0.37 -7.21 16 10 C 0.12 3.02 11.17 -17.61 -0.20 2.83 16 11 N -0.48 -13.40 7.85 -11.21 -0.09 -13.48 16 12 C 0.25 6.93 6.55 -85.02 -0.56 6.38 16 13 C -0.43 -11.53 9.14 -37.70 -0.34 -11.87 16 14 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 15 C 0.07 1.76 5.50 -17.35 -0.10 1.66 16 16 N -0.72 -19.19 11.46 55.55 0.64 -18.55 16 17 Si 0.91 18.55 29.56 -169.99 -5.02 13.53 16 18 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 19 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 20 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 21 C -0.25 -6.04 9.21 -38.32 -0.35 -6.39 16 22 C -0.11 -2.14 9.50 -38.74 -0.37 -2.51 16 23 C 0.11 1.97 7.48 -83.09 -0.62 1.35 16 24 N -0.32 -5.28 12.55 33.23 0.42 -4.86 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.09 0.29 8.13 -51.93 -0.42 -0.13 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.13 2.11 6.15 -52.49 -0.32 1.79 16 31 H 0.10 2.01 6.25 -52.48 -0.33 1.68 16 32 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 33 H 0.27 6.64 8.29 -40.82 -0.34 6.30 16 34 H 0.10 2.31 6.23 -52.49 -0.33 1.98 16 35 H 0.13 2.42 6.17 -52.49 -0.32 2.09 16 LS Contribution 304.58 15.07 4.59 4.59 Total: -1.00 -33.02 304.58 -8.20 -41.22 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -3.38 Total: 4.34 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -5.08 Total: -22.47 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.70 Total: -41.20 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.02 Total: 13.53 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.02 -8.20 -41.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241603435.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.396 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds