Wall clock time and date at job start Tue Mar 31 2020 01:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.33962 * 125.01002 * 2 1 4 4 C 1.38390 * 107.86245 * 179.97438 * 3 2 1 5 5 C 1.40876 * 134.67566 * 179.97438 * 4 3 2 6 6 C 1.37804 * 119.35771 * 179.97438 * 5 4 3 7 7 C 1.48255 * 119.35990 * 180.02562 * 6 5 4 8 8 C 1.38978 * 119.62454 * 184.97937 * 7 6 5 9 9 C 1.40821 * 118.75670 * 179.97438 * 8 7 6 10 10 C 1.41530 * 120.98264 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99672 * 23.20404 * 10 9 8 12 12 C 1.40047 * 120.00200 * 203.19642 * 10 9 8 13 13 N 1.30739 * 119.99731 * 17.29453 * 12 10 9 14 14 Si 1.86799 * 120.00170 * 197.30110 * 12 10 9 15 15 H 1.48505 * 109.47127 * 59.99925 * 14 12 10 16 16 H 1.48503 * 109.47097 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47117 * 299.99983 * 14 12 10 18 18 C 1.41165 * 118.03336 * 0.02562 * 9 8 7 19 19 C 1.37700 * 119.08845 * 359.97438 * 18 9 8 20 20 N 1.31943 * 121.16619 * 359.73923 * 19 18 9 21 21 C 1.40760 * 121.28872 * 0.02562 * 6 5 4 22 22 C 1.35319 * 121.69131 * 359.97438 * 21 6 5 23 23 C 1.41277 * 119.90562 * 0.27748 * 22 21 6 24 24 N 1.32042 * 134.42522 * 180.45919 * 23 22 21 25 25 H 1.08999 * 109.46968 * 90.00478 * 1 2 3 26 26 H 1.09002 * 109.46841 * 210.00111 * 1 2 3 27 27 H 1.09000 * 109.47408 * 330.00036 * 1 2 3 28 28 H 1.08004 * 126.06612 * 0.02685 * 3 2 1 29 29 H 1.08002 * 120.32198 * 0.02562 * 5 4 3 30 30 H 1.08002 * 120.62559 * 0.02562 * 8 7 6 31 31 H 0.97002 * 119.99742 * 179.97438 * 13 12 10 32 32 H 1.08003 * 120.45291 * 179.97438 * 18 9 8 33 33 H 1.08004 * 119.41980 * 179.97438 * 19 18 9 34 34 H 1.07995 * 119.15652 * 179.97438 * 21 6 5 35 35 H 1.08010 * 120.04682 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2336 1.0972 0.0000 4 6 3.5559 0.6892 0.0006 5 6 4.7978 1.3544 0.0004 6 6 5.9604 0.6147 0.0017 7 6 7.2673 1.3147 0.0021 8 6 8.4412 0.5780 -0.1014 9 6 9.6724 1.2616 -0.0997 10 6 10.8963 0.5584 -0.2022 11 1 10.9182 -0.4255 -0.6471 12 6 12.0792 1.1384 0.2730 13 7 12.0250 2.1500 1.0994 14 14 13.7342 0.4667 -0.2739 15 1 13.8492 0.5758 -1.7504 16 1 14.8220 1.2494 0.3661 17 1 13.8471 -0.9585 0.1274 18 6 9.6497 2.6689 0.0083 19 6 8.4368 3.3134 0.1064 20 7 7.3026 2.6392 0.0959 21 6 5.9315 -0.7926 0.0027 22 6 4.7658 -1.4797 0.0029 23 6 3.5371 -0.7823 -0.0038 24 7 2.2678 -1.1461 0.0021 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.8833 2.1189 0.0004 29 1 4.8382 2.4337 0.0001 30 1 8.4099 -0.4985 -0.1825 31 1 12.8442 2.5515 1.4289 32 1 10.5711 3.2324 0.0139 33 1 8.4132 4.3899 0.1898 34 1 6.8636 -1.3380 0.0033 35 1 4.7746 -2.5598 0.0041 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241605523.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:33 Heat of formation + Delta-G solvation = 120.575019 kcal Electronic energy + Delta-G solvation = -19695.551134 eV Core-core repulsion = 16659.618415 eV Total energy + Delta-G solvation = -3035.932719 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.03048 -38.53481 -36.72781 -34.15034 -32.77503 -31.53536 -30.65499 -30.08550 -27.96942 -26.77781 -25.87809 -22.87309 -22.51508 -21.04965 -20.39401 -20.18555 -17.65630 -16.75377 -16.58425 -15.69454 -15.58882 -14.95915 -14.56108 -14.18526 -13.66269 -13.55030 -13.36423 -13.24305 -12.89598 -12.81515 -12.53345 -12.41067 -11.66097 -11.45733 -11.31331 -11.05396 -11.03546 -10.82271 -10.34267 -10.04921 -10.01455 -9.78031 -9.41045 -8.48005 -8.04882 -7.97673 -7.87033 -6.89236 -6.73164 -4.59720 0.84292 1.91500 2.39726 2.60348 2.76619 3.01039 3.02516 3.05047 3.29080 3.84850 4.25814 4.27215 4.63818 4.72069 4.85799 4.95569 5.11793 5.24500 5.31782 5.53452 5.71723 5.80297 5.92435 5.98925 6.14331 6.44361 6.70500 6.76823 6.80291 6.85937 6.90552 6.94559 7.12544 7.19188 7.30320 7.40152 7.52092 7.81105 7.85802 8.11571 8.45222 8.73614 8.74536 9.59285 10.05944 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.041464 B = 0.003449 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.126022 B = 8116.783039 C = 8708.865123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.333 5.333 3 C 0.067 3.933 4 C -0.199 4.199 5 C -0.024 4.024 6 C -0.055 4.055 7 C 0.160 3.840 8 C -0.257 4.257 9 C 0.127 3.873 10 C -0.456 4.456 11 H 0.082 0.918 12 C 0.078 3.922 13 N -0.785 5.785 14 Si 0.912 3.088 15 H -0.262 1.262 16 H -0.277 1.277 17 H -0.264 1.264 18 C -0.213 4.213 19 C 0.087 3.913 20 N -0.567 5.567 21 C -0.049 4.049 22 C -0.123 4.123 23 C 0.105 3.895 24 N -0.321 5.321 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.183 0.817 29 H 0.135 0.865 30 H 0.105 0.895 31 H 0.284 0.716 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.133 0.867 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.404 -1.390 -1.483 14.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.108 5.108 3 C -0.088 4.088 4 C -0.208 4.208 5 C -0.045 4.045 6 C -0.057 4.057 7 C 0.027 3.973 8 C -0.280 4.280 9 C 0.120 3.880 10 C -0.487 4.487 11 H 0.100 0.900 12 C -0.142 4.142 13 N -0.410 5.410 14 Si 0.736 3.264 15 H -0.187 1.187 16 H -0.202 1.202 17 H -0.188 1.188 18 C -0.235 4.235 19 C -0.065 4.065 20 N -0.282 5.282 21 C -0.072 4.072 22 C -0.144 4.144 23 C -0.048 4.048 24 N -0.149 5.149 25 H 0.098 0.902 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.200 0.800 29 H 0.153 0.847 30 H 0.123 0.877 31 H 0.095 0.905 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.151 0.849 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.068 -1.769 -1.266 16.214 hybrid contribution 2.135 0.063 -0.174 2.143 sum -13.933 -1.705 -1.440 14.110 Atomic orbital electron populations 1.21984 0.74144 1.04840 1.03793 1.48391 1.07205 1.04209 1.50982 1.22592 0.90586 0.92994 1.02596 1.19661 0.93087 0.93558 1.14500 1.20626 0.88444 0.99858 0.95554 1.18384 0.92050 0.91976 1.03323 1.19086 0.90598 0.89795 0.97830 1.21858 0.92659 0.98674 1.14794 1.17756 0.92128 0.91884 0.86269 1.19576 0.91069 1.03161 1.34936 0.90037 1.25971 1.01684 0.94043 0.92464 1.69766 1.31017 1.19191 1.21071 0.86303 0.79995 0.79916 0.80191 1.18675 1.20222 1.18826 1.22251 0.97911 0.95314 1.08052 1.21926 0.88571 0.97994 0.97982 1.67268 1.30325 1.07754 1.22868 1.20872 0.97793 0.93629 0.94933 1.19657 0.88187 0.98955 1.07639 1.21003 0.92135 0.93088 0.98603 1.77612 1.01203 1.04290 1.31801 0.90204 0.88931 0.89117 0.80032 0.84688 0.87714 0.90523 0.85618 0.86141 0.84919 0.85715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 11.38 59.85 0.68 1.30 16 2 N -0.33 -4.15 3.95 -67.57 -0.27 -4.41 16 3 C 0.07 0.85 11.51 -16.57 -0.19 0.66 16 4 C -0.20 -3.28 6.32 -105.22 -0.67 -3.95 16 5 C -0.02 -0.43 9.62 -38.74 -0.37 -0.81 16 6 C -0.06 -1.11 5.86 -104.98 -0.62 -1.73 16 7 C 0.16 3.76 6.71 -83.04 -0.56 3.20 16 8 C -0.26 -6.26 9.22 -38.33 -0.35 -6.61 16 9 C 0.13 3.35 5.61 -106.56 -0.60 2.75 16 10 C -0.46 -11.76 9.12 -37.65 -0.34 -12.10 16 11 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 12 C 0.08 1.90 5.20 -17.34 -0.09 1.81 16 13 N -0.79 -19.65 10.90 55.55 0.61 -19.04 16 14 Si 0.91 18.03 29.59 -169.99 -5.03 13.00 16 15 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 16 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 17 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 18 C -0.21 -5.46 8.80 -38.67 -0.34 -5.80 16 19 C 0.09 2.08 11.15 -17.70 -0.20 1.88 16 20 N -0.57 -13.57 9.32 -9.95 -0.09 -13.66 16 21 C -0.05 -0.89 9.26 -39.67 -0.37 -1.25 16 22 C -0.12 -2.05 10.06 -39.47 -0.40 -2.45 16 23 C 0.10 1.81 7.49 -83.00 -0.62 1.19 16 24 N -0.32 -5.20 12.54 33.29 0.42 -4.79 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.34 8.13 -51.93 -0.42 -0.08 16 28 H 0.18 1.49 8.06 -52.48 -0.42 1.06 16 29 H 0.14 2.44 7.46 -52.49 -0.39 2.05 16 30 H 0.10 2.33 6.12 -52.49 -0.32 2.01 16 31 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16 32 H 0.13 3.26 6.16 -52.48 -0.32 2.94 16 33 H 0.12 2.51 8.06 -52.48 -0.42 2.08 16 34 H 0.13 2.23 6.07 -52.49 -0.32 1.91 16 35 H 0.12 1.78 8.06 -52.48 -0.42 1.35 16 LS Contribution 305.51 15.07 4.60 4.60 Total: -1.00 -31.26 305.51 -8.23 -39.49 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -3.44 Total: 6.71 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -5.03 Total: -21.90 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.66 Total: -41.91 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.26 -8.23 -39.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241605523.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.065 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds