Wall clock time and date at job start Tue Mar 31 2020 01:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.33962 * 125.01002 * 2 1 4 4 C 1.38390 * 107.86245 * 179.97438 * 3 2 1 5 5 C 1.40876 * 134.67566 * 179.97438 * 4 3 2 6 6 C 1.37804 * 119.35771 * 179.97438 * 5 4 3 7 7 C 1.48255 * 119.35990 * 180.02562 * 6 5 4 8 8 C 1.38978 * 119.62454 * 184.97937 * 7 6 5 9 9 C 1.40821 * 118.75670 * 179.97438 * 8 7 6 10 10 C 1.41530 * 120.98264 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99672 * 23.20404 * 10 9 8 12 12 C 1.40047 * 120.00200 * 203.19642 * 10 9 8 13 13 N 1.30739 * 119.99731 * 17.29453 * 12 10 9 14 14 Si 1.86799 * 120.00170 * 197.30110 * 12 10 9 15 15 H 1.48505 * 109.47127 * 59.99925 * 14 12 10 16 16 H 1.48503 * 109.47097 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47117 * 299.99983 * 14 12 10 18 18 C 1.41165 * 118.03336 * 0.02562 * 9 8 7 19 19 C 1.37700 * 119.08845 * 359.97438 * 18 9 8 20 20 N 1.31943 * 121.16619 * 359.73923 * 19 18 9 21 21 C 1.40760 * 121.28872 * 0.02562 * 6 5 4 22 22 C 1.35319 * 121.69131 * 359.97438 * 21 6 5 23 23 C 1.41277 * 119.90562 * 0.27748 * 22 21 6 24 24 N 1.32042 * 134.42522 * 180.45919 * 23 22 21 25 25 H 1.08999 * 109.46968 * 90.00478 * 1 2 3 26 26 H 1.09002 * 109.46841 * 210.00111 * 1 2 3 27 27 H 1.09000 * 109.47408 * 330.00036 * 1 2 3 28 28 H 1.08004 * 126.06612 * 0.02685 * 3 2 1 29 29 H 1.08002 * 120.32198 * 0.02562 * 5 4 3 30 30 H 1.08002 * 120.62559 * 0.02562 * 8 7 6 31 31 H 0.97002 * 119.99742 * 179.97438 * 13 12 10 32 32 H 1.08003 * 120.45291 * 179.97438 * 18 9 8 33 33 H 1.08004 * 119.41980 * 179.97438 * 19 18 9 34 34 H 1.07995 * 119.15652 * 179.97438 * 21 6 5 35 35 H 1.08010 * 120.04682 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2336 1.0972 0.0000 4 6 3.5559 0.6892 0.0006 5 6 4.7978 1.3544 0.0004 6 6 5.9604 0.6147 0.0017 7 6 7.2673 1.3147 0.0021 8 6 8.4412 0.5780 -0.1014 9 6 9.6724 1.2616 -0.0997 10 6 10.8963 0.5584 -0.2022 11 1 10.9182 -0.4255 -0.6471 12 6 12.0792 1.1384 0.2730 13 7 12.0250 2.1500 1.0994 14 14 13.7342 0.4667 -0.2739 15 1 13.8492 0.5758 -1.7504 16 1 14.8220 1.2494 0.3661 17 1 13.8471 -0.9585 0.1274 18 6 9.6497 2.6689 0.0083 19 6 8.4368 3.3134 0.1064 20 7 7.3026 2.6392 0.0959 21 6 5.9315 -0.7926 0.0027 22 6 4.7658 -1.4797 0.0029 23 6 3.5371 -0.7823 -0.0038 24 7 2.2678 -1.1461 0.0021 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.8833 2.1189 0.0004 29 1 4.8382 2.4337 0.0001 30 1 8.4099 -0.4985 -0.1825 31 1 12.8442 2.5515 1.4289 32 1 10.5711 3.2324 0.0139 33 1 8.4132 4.3899 0.1898 34 1 6.8636 -1.3380 0.0033 35 1 4.7746 -2.5598 0.0041 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241605523.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:32 Heat of formation + Delta-G solvation = 102.623588 kcal Electronic energy + Delta-G solvation = -19696.329566 eV Core-core repulsion = 16659.618415 eV Total energy + Delta-G solvation = -3036.711151 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.17465 -40.27739 -38.10169 -35.97300 -33.94606 -32.89149 -32.37638 -31.62254 -29.20721 -28.16352 -27.54967 -24.20399 -24.06800 -22.62991 -21.95452 -21.40986 -19.37547 -17.96952 -17.75382 -17.45076 -16.50914 -16.47727 -16.28055 -15.89691 -15.19477 -14.81995 -14.75903 -14.51036 -14.23490 -14.03833 -13.87491 -13.63249 -13.23419 -12.98805 -12.93312 -12.61006 -12.38056 -12.27639 -11.96664 -11.71425 -11.28539 -11.22416 -11.18603 -9.97013 -9.85834 -9.84820 -9.34139 -8.70307 -8.22258 -6.54755 -0.36477 0.41436 0.96231 1.26157 1.39459 1.49794 1.52051 1.52889 1.65699 2.19135 2.70075 3.02729 3.21093 3.67717 3.74369 3.83477 4.13417 4.25254 4.30798 4.40310 4.44141 4.50229 4.64472 4.68640 4.72121 4.94387 4.98257 5.01638 5.24776 5.27145 5.33614 5.49236 5.53422 5.61521 5.86243 5.91709 5.95489 5.98306 6.25291 6.54428 6.64155 6.82486 6.83114 7.72141 8.25462 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.041464 B = 0.003449 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.126022 B = 8116.783039 C = 8708.865123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.321 5.321 3 C 0.105 3.895 4 C -0.237 4.237 5 C -0.003 4.003 6 C -0.098 4.098 7 C 0.164 3.836 8 C -0.281 4.281 9 C 0.101 3.899 10 C -0.489 4.489 11 H 0.083 0.917 12 C 0.039 3.961 13 N -0.814 5.814 14 Si 0.988 3.012 15 H -0.260 1.260 16 H -0.265 1.265 17 H -0.258 1.258 18 C -0.240 4.240 19 C 0.087 3.913 20 N -0.575 5.575 21 C -0.059 4.059 22 C -0.122 4.122 23 C 0.086 3.914 24 N -0.350 5.350 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.130 0.870 28 H 0.235 0.765 29 H 0.135 0.865 30 H 0.114 0.886 31 H 0.293 0.707 32 H 0.116 0.884 33 H 0.149 0.851 34 H 0.132 0.868 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.779 -1.123 -1.646 16.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.094 5.094 3 C -0.053 4.053 4 C -0.247 4.247 5 C -0.024 4.024 6 C -0.101 4.101 7 C 0.031 3.969 8 C -0.303 4.303 9 C 0.093 3.907 10 C -0.520 4.520 11 H 0.101 0.899 12 C -0.179 4.179 13 N -0.439 5.439 14 Si 0.807 3.193 15 H -0.184 1.184 16 H -0.189 1.189 17 H -0.182 1.182 18 C -0.263 4.263 19 C -0.065 4.065 20 N -0.290 5.290 21 C -0.082 4.082 22 C -0.143 4.143 23 C -0.066 4.066 24 N -0.178 5.178 25 H 0.118 0.882 26 H 0.115 0.885 27 H 0.148 0.852 28 H 0.251 0.749 29 H 0.153 0.847 30 H 0.132 0.868 31 H 0.104 0.896 32 H 0.134 0.866 33 H 0.166 0.834 34 H 0.150 0.850 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -18.487 -1.527 -1.425 18.605 hybrid contribution 2.473 0.028 -0.100 2.475 sum -16.015 -1.498 -1.525 16.157 Atomic orbital electron populations 1.22552 0.70500 1.07072 1.05816 1.48938 1.09193 1.03282 1.48031 1.23354 0.88953 0.94961 0.98074 1.19870 0.94162 0.93420 1.17235 1.20653 0.88888 0.99694 0.93189 1.18340 0.91125 0.92931 1.07698 1.19589 0.91978 0.89760 0.95612 1.22043 0.92737 0.99393 1.16139 1.18162 0.93201 0.92636 0.86701 1.19875 0.92123 1.03740 1.36249 0.89934 1.26861 1.05086 0.94109 0.91819 1.69814 1.32552 1.20057 1.21469 0.85171 0.75035 0.79404 0.79642 1.18391 1.18929 1.18198 1.22232 0.98232 0.95310 1.10529 1.22343 0.88101 0.99370 0.96702 1.67393 1.30032 1.08068 1.23501 1.20799 0.98407 0.92896 0.96097 1.19825 0.87902 0.99848 1.06767 1.21200 0.92682 0.93747 0.98935 1.77570 1.00954 1.06305 1.33011 0.88185 0.88509 0.85215 0.74906 0.84729 0.86786 0.89636 0.86633 0.83383 0.84999 0.83922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 11.38 127.77 1.45 2.11 16 2 N -0.32 -6.71 3.95 -367.71 -1.45 -8.17 16 3 C 0.10 2.18 11.51 84.40 0.97 3.15 16 4 C -0.24 -7.41 6.32 -20.25 -0.13 -7.54 16 5 C 0.00 -0.11 9.62 22.81 0.22 0.11 16 6 C -0.10 -4.08 5.86 -20.10 -0.12 -4.20 16 7 C 0.16 7.96 6.71 41.84 0.28 8.24 16 8 C -0.28 -14.39 9.22 23.08 0.21 -14.18 16 9 C 0.10 5.56 5.61 -21.12 -0.12 5.44 16 10 C -0.49 -26.26 9.12 23.52 0.21 -26.04 16 11 H 0.08 4.23 7.90 -2.91 -0.02 4.20 16 12 C 0.04 1.91 5.20 85.29 0.44 2.35 16 13 N -0.81 -41.74 10.90 21.84 0.24 -41.50 16 14 Si 0.99 37.21 29.59 68.60 2.03 39.24 16 15 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 16 H -0.27 -9.37 7.11 99.48 0.71 -8.67 16 17 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 18 C -0.24 -12.87 8.80 22.86 0.20 -12.67 16 19 C 0.09 4.25 11.15 84.55 0.94 5.19 16 20 N -0.57 -28.09 9.32 -185.40 -1.73 -29.81 16 21 C -0.06 -2.20 9.26 22.21 0.21 -1.99 16 22 C -0.12 -4.09 10.06 22.34 0.22 -3.87 16 23 C 0.09 2.90 7.49 42.21 0.32 3.22 16 24 N -0.35 -10.59 12.54 -48.61 -0.61 -11.20 16 25 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.13 0.15 8.13 -2.39 -0.02 0.13 16 28 H 0.23 2.30 8.06 -2.91 -0.02 2.28 16 29 H 0.13 4.77 7.46 -2.91 -0.02 4.75 16 30 H 0.11 5.41 6.12 -2.91 -0.02 5.39 16 31 H 0.29 13.46 8.29 -92.71 -0.77 12.69 16 32 H 0.12 6.29 6.16 -2.91 -0.02 6.27 16 33 H 0.15 6.19 8.06 -2.91 -0.02 6.16 16 34 H 0.13 4.71 6.07 -2.91 -0.02 4.69 16 35 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -71.41 305.51 4.93 -66.48 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 1.13 Total: 25.64 kcal Atomic # 6 Polarization: -46.00 SS G_CDS: 5.32 Total: -40.68 kcal Atomic # 7 Polarization: -87.13 SS G_CDS: -3.55 Total: -90.68 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.24 kcal Total: -71.41 4.93 -66.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241605523.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.106 kcal (2) G-P(sol) polarization free energy of solvation -71.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds