Wall clock time and date at job start Tue Mar 31 2020 01:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.33985 * 125.00112 * 2 1 4 4 C 1.38626 * 107.79451 * 180.02562 * 3 2 1 5 5 C 1.40606 * 134.65426 * 180.02562 * 4 3 2 6 6 C 1.38550 * 119.31267 * 179.97438 * 5 4 3 7 7 C 1.47527 * 119.41002 * 179.97438 * 6 5 4 8 8 C 1.39861 * 120.66758 * 310.23870 * 7 6 5 9 9 C 1.38261 * 118.47170 * 180.24064 * 8 7 6 10 10 C 1.39099 * 119.75508 * 359.50017 * 9 8 7 11 11 N 1.31256 * 121.38096 * 0.27879 * 10 9 8 12 12 C 1.33752 * 121.63546 * 359.97438 * 11 10 9 13 13 C 1.40662 * 119.95639 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99868 * 180.02562 * 13 12 11 15 15 C 1.40028 * 120.00451 * 0.02562 * 13 12 11 16 16 N 1.30778 * 119.99714 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00503 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47169 * 59.99822 * 17 15 13 19 19 H 1.48504 * 109.47297 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47113 * 299.99707 * 17 15 13 21 21 C 1.40968 * 121.17863 * 0.27844 * 6 5 4 22 22 C 1.35205 * 121.65328 * 359.42792 * 21 6 5 23 23 C 1.41425 * 119.97075 * 0.56146 * 22 21 6 24 24 N 1.31932 * 134.34530 * 179.74437 * 23 22 21 25 25 H 1.09006 * 109.46834 * 90.00737 * 1 2 3 26 26 H 1.09003 * 109.47231 * 210.00074 * 1 2 3 27 27 H 1.08995 * 109.47645 * 330.00383 * 1 2 3 28 28 H 1.08002 * 126.09826 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.34481 * 359.97438 * 5 4 3 30 30 H 1.07996 * 120.76147 * 0.02562 * 8 7 6 31 31 H 1.08002 * 120.12350 * 179.78484 * 9 8 7 32 32 H 1.08009 * 119.30687 * 180.25890 * 10 9 8 33 33 H 0.96990 * 120.00122 * 180.02562 * 16 15 13 34 34 H 1.07994 * 119.17192 * 179.69795 * 21 6 5 35 35 H 1.08000 * 120.00940 * 180.28625 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2335 1.0975 0.0000 4 6 3.5577 0.6874 -0.0006 5 6 4.7976 1.3506 -0.0004 6 6 5.9655 0.6051 -0.0007 7 6 7.2676 1.2987 -0.0011 8 6 7.5316 2.3199 -0.9196 9 6 8.7689 2.9357 -0.8828 10 6 9.7097 2.5391 0.0619 11 7 9.4521 1.5828 0.9234 12 6 8.2757 0.9465 0.9340 13 6 8.0375 -0.0737 1.8728 14 1 7.0880 -0.5883 1.8817 15 6 9.0313 -0.4221 2.7956 16 7 10.1813 0.2007 2.7844 17 14 8.7153 -1.7773 4.0417 18 1 8.4264 -3.0476 3.3289 19 1 9.9161 -1.9526 4.8977 20 1 7.5524 -1.4094 4.8888 21 6 5.9318 -0.8041 -0.0069 22 6 4.7643 -1.4860 -0.0015 23 6 3.5363 -0.7843 -0.0011 24 7 2.2676 -1.1460 -0.0009 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5137 28 1 1.8836 2.1193 0.0004 29 1 4.8391 2.4297 -0.0001 30 1 6.7874 2.6180 -1.6431 31 1 9.0025 3.7250 -1.5820 32 1 10.6725 3.0280 0.0869 33 1 10.8698 -0.0408 3.4234 34 1 6.8619 -1.3529 -0.0119 35 1 4.7695 -2.5660 -0.0018 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241606561.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:13 Heat of formation + Delta-G solvation = 131.420574 kcal Electronic energy + Delta-G solvation = -20333.033081 eV Core-core repulsion = 17297.570661 eV Total energy + Delta-G solvation = -3035.462420 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.81467 -38.41420 -36.51492 -33.70402 -32.82363 -31.31482 -30.56623 -30.11043 -27.89140 -26.72599 -25.55499 -22.89116 -21.88496 -21.29059 -20.11214 -20.06874 -17.51435 -16.78893 -16.44242 -15.53533 -15.40436 -15.23475 -14.37758 -14.22053 -13.55085 -13.48120 -13.21027 -12.98895 -12.73437 -12.64630 -12.26287 -12.08308 -11.56261 -11.26961 -11.13851 -11.09621 -10.86214 -10.76711 -10.33730 -9.94367 -9.84529 -9.66482 -9.40933 -8.34866 -8.02117 -7.69646 -7.59978 -6.79594 -6.44617 -4.53294 1.05269 2.24790 2.57138 2.72826 2.86610 3.07056 3.10600 3.12425 3.22928 3.91885 4.42473 4.48988 4.71563 4.79092 4.96606 5.13025 5.22137 5.47490 5.68453 5.77999 5.89825 6.04011 6.10833 6.14847 6.21890 6.45689 6.52846 6.67683 6.84347 6.98005 6.99543 7.11666 7.13551 7.32232 7.35583 7.47037 7.66822 7.77621 8.01520 8.04522 8.21544 8.60325 8.89630 10.06189 10.24343 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017005 B = 0.005767 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.225325 B = 4853.861736 C = 6162.495029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.336 5.336 3 C 0.048 3.952 4 C -0.182 4.182 5 C -0.084 4.084 6 C -0.001 4.001 7 C -0.231 4.231 8 C -0.035 4.035 9 C -0.321 4.321 10 C 0.131 3.869 11 N -0.483 5.483 12 C 0.268 3.732 13 C -0.419 4.419 14 H 0.094 0.906 15 C 0.069 3.931 16 N -0.709 5.709 17 Si 0.903 3.097 18 H -0.261 1.261 19 H -0.276 1.276 20 H -0.263 1.263 21 C -0.042 4.042 22 C -0.128 4.128 23 C 0.100 3.900 24 N -0.322 5.322 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.178 0.822 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.275 0.725 34 H 0.134 0.866 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.627 0.705 -3.148 13.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.112 5.112 3 C -0.105 4.105 4 C -0.191 4.191 5 C -0.105 4.105 6 C -0.003 4.003 7 C -0.236 4.236 8 C -0.059 4.059 9 C -0.345 4.345 10 C -0.038 4.038 11 N -0.194 5.194 12 C 0.144 3.856 13 C -0.449 4.449 14 H 0.111 0.889 15 C -0.158 4.158 16 N -0.329 5.329 17 Si 0.727 3.273 18 H -0.186 1.186 19 H -0.201 1.201 20 H -0.188 1.188 21 C -0.064 4.064 22 C -0.149 4.149 23 C -0.053 4.053 24 N -0.151 5.151 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.195 0.805 29 H 0.134 0.866 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.135 0.865 33 H 0.086 0.914 34 H 0.152 0.848 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.817 -0.599 -2.384 13.050 hybrid contribution -0.301 0.578 -0.082 0.657 sum -13.118 -0.021 -2.465 13.348 Atomic orbital electron populations 1.21919 0.74504 1.04619 1.03507 1.48282 1.06941 1.04195 1.51798 1.22525 0.90642 0.92741 1.04642 1.19547 0.92813 0.93484 1.13302 1.20514 0.89050 0.98387 1.02504 1.18377 0.92071 0.91988 0.97873 1.19348 0.95438 1.04185 1.04622 1.20912 0.95473 0.93659 0.95847 1.21196 0.97442 1.08489 1.07323 1.22597 0.96995 0.93447 0.90734 1.68774 1.20122 1.08222 1.22299 1.18533 0.86084 0.90962 0.89977 1.19726 1.00469 1.13993 1.10708 0.88853 1.26128 0.94619 0.97014 0.98014 1.70143 1.02856 1.31859 1.28029 0.86441 0.78980 0.81491 0.80435 1.18579 1.20121 1.18771 1.21030 0.97502 0.94175 0.93704 1.19705 0.88379 0.98807 1.07995 1.20975 0.92005 0.93116 0.99173 1.77503 1.01385 1.04408 1.31760 0.90482 0.89114 0.89348 0.80505 0.86604 0.88575 0.88814 0.86488 0.91406 0.84787 0.86121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.76 11.38 59.84 0.68 1.45 16 2 N -0.34 -4.69 3.95 -67.50 -0.27 -4.95 16 3 C 0.05 0.68 11.52 -16.47 -0.19 0.49 16 4 C -0.18 -3.27 6.32 -105.22 -0.66 -3.93 16 5 C -0.08 -1.61 9.58 -38.57 -0.37 -1.98 16 6 C 0.00 -0.02 5.03 -104.96 -0.53 -0.55 16 7 C -0.23 -5.48 5.50 -104.09 -0.57 -6.05 16 8 C -0.03 -0.76 9.60 -38.97 -0.37 -1.14 16 9 C -0.32 -7.06 10.10 -39.25 -0.40 -7.45 16 10 C 0.13 3.11 11.17 -17.48 -0.20 2.92 16 11 N -0.48 -13.03 7.85 -10.90 -0.09 -13.12 16 12 C 0.27 7.08 6.55 -84.70 -0.55 6.53 16 13 C -0.42 -10.82 7.91 -38.00 -0.30 -11.12 16 14 H 0.09 2.30 5.24 -52.48 -0.27 2.02 16 15 C 0.07 1.71 5.50 -17.33 -0.10 1.62 16 16 N -0.71 -18.42 11.46 55.55 0.64 -17.78 16 17 Si 0.90 18.48 29.56 -169.99 -5.02 13.45 16 18 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 19 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 21 C -0.04 -0.85 7.37 -39.63 -0.29 -1.14 16 22 C -0.13 -2.40 10.05 -39.45 -0.40 -2.80 16 23 C 0.10 1.91 7.49 -82.98 -0.62 1.29 16 24 N -0.32 -5.75 12.53 33.30 0.42 -5.34 16 25 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.09 0.45 8.13 -51.93 -0.42 0.03 16 28 H 0.18 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.12 2.06 8.01 -52.49 -0.42 1.63 16 30 H 0.10 1.87 8.05 -52.49 -0.42 1.45 16 31 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 32 H 0.12 2.47 8.06 -52.48 -0.42 2.04 16 33 H 0.27 6.49 8.29 -40.82 -0.34 6.15 16 34 H 0.13 2.73 7.19 -52.49 -0.38 2.35 16 35 H 0.12 2.01 8.06 -52.49 -0.42 1.58 16 LS Contribution 305.13 15.07 4.60 4.60 Total: -1.00 -31.55 305.13 -8.18 -39.73 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -3.59 Total: 5.30 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -4.87 Total: -21.88 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.70 Total: -41.19 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.02 Total: 13.45 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.55 -8.18 -39.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241606561.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.152 kcal (2) G-P(sol) polarization free energy of solvation -31.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds