Wall clock time and date at job start Tue Mar 31 2020 01:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.33985 * 125.00112 * 2 1 4 4 C 1.38626 * 107.79451 * 180.02562 * 3 2 1 5 5 C 1.40606 * 134.65426 * 180.02562 * 4 3 2 6 6 C 1.38550 * 119.31267 * 179.97438 * 5 4 3 7 7 C 1.47527 * 119.41002 * 179.97438 * 6 5 4 8 8 C 1.39861 * 120.66758 * 310.23870 * 7 6 5 9 9 C 1.38261 * 118.47170 * 180.24064 * 8 7 6 10 10 C 1.39099 * 119.75508 * 359.50017 * 9 8 7 11 11 N 1.31256 * 121.38096 * 0.27879 * 10 9 8 12 12 C 1.33752 * 121.63546 * 359.97438 * 11 10 9 13 13 C 1.40662 * 119.95639 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99868 * 180.02562 * 13 12 11 15 15 C 1.40028 * 120.00451 * 0.02562 * 13 12 11 16 16 N 1.30778 * 119.99714 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00503 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47169 * 59.99822 * 17 15 13 19 19 H 1.48504 * 109.47297 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47113 * 299.99707 * 17 15 13 21 21 C 1.40968 * 121.17863 * 0.27844 * 6 5 4 22 22 C 1.35205 * 121.65328 * 359.42792 * 21 6 5 23 23 C 1.41425 * 119.97075 * 0.56146 * 22 21 6 24 24 N 1.31932 * 134.34530 * 179.74437 * 23 22 21 25 25 H 1.09006 * 109.46834 * 90.00737 * 1 2 3 26 26 H 1.09003 * 109.47231 * 210.00074 * 1 2 3 27 27 H 1.08995 * 109.47645 * 330.00383 * 1 2 3 28 28 H 1.08002 * 126.09826 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.34481 * 359.97438 * 5 4 3 30 30 H 1.07996 * 120.76147 * 0.02562 * 8 7 6 31 31 H 1.08002 * 120.12350 * 179.78484 * 9 8 7 32 32 H 1.08009 * 119.30687 * 180.25890 * 10 9 8 33 33 H 0.96990 * 120.00122 * 180.02562 * 16 15 13 34 34 H 1.07994 * 119.17192 * 179.69795 * 21 6 5 35 35 H 1.08000 * 120.00940 * 180.28625 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2335 1.0975 0.0000 4 6 3.5577 0.6874 -0.0006 5 6 4.7976 1.3506 -0.0004 6 6 5.9655 0.6051 -0.0007 7 6 7.2676 1.2987 -0.0011 8 6 7.5316 2.3199 -0.9196 9 6 8.7689 2.9357 -0.8828 10 6 9.7097 2.5391 0.0619 11 7 9.4521 1.5828 0.9234 12 6 8.2757 0.9465 0.9340 13 6 8.0375 -0.0737 1.8728 14 1 7.0880 -0.5883 1.8817 15 6 9.0313 -0.4221 2.7956 16 7 10.1813 0.2007 2.7844 17 14 8.7153 -1.7773 4.0417 18 1 8.4264 -3.0476 3.3289 19 1 9.9161 -1.9526 4.8977 20 1 7.5524 -1.4094 4.8888 21 6 5.9318 -0.8041 -0.0069 22 6 4.7643 -1.4860 -0.0015 23 6 3.5363 -0.7843 -0.0011 24 7 2.2676 -1.1460 -0.0009 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5137 28 1 1.8836 2.1193 0.0004 29 1 4.8391 2.4297 -0.0001 30 1 6.7874 2.6180 -1.6431 31 1 9.0025 3.7250 -1.5820 32 1 10.6725 3.0280 0.0869 33 1 10.8698 -0.0408 3.4234 34 1 6.8619 -1.3529 -0.0119 35 1 4.7695 -2.5660 -0.0018 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241606561.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:13 Heat of formation + Delta-G solvation = 113.197833 kcal Electronic energy + Delta-G solvation = -20333.823278 eV Core-core repulsion = 17297.570661 eV Total energy + Delta-G solvation = -3036.252617 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.06849 -40.14744 -37.96942 -35.52299 -34.12267 -32.66457 -32.17784 -31.80124 -29.27983 -27.95375 -27.31141 -24.30132 -23.41379 -22.95646 -21.66772 -21.35031 -19.34553 -18.14060 -17.62706 -17.25205 -16.73643 -16.44191 -16.06680 -15.96796 -14.94777 -14.83461 -14.65907 -14.18681 -14.01678 -13.91571 -13.81061 -13.53168 -13.11982 -12.88548 -12.79909 -12.73709 -12.30283 -12.23840 -11.98794 -11.53485 -11.20680 -11.18242 -11.09140 -10.06640 -9.60182 -9.44171 -9.29221 -8.34424 -8.17831 -6.40813 -0.24424 0.66009 1.05984 1.33571 1.39155 1.49929 1.55480 1.58443 1.60973 2.22095 2.87007 3.02096 3.31940 3.80136 3.99533 4.17157 4.21520 4.29617 4.40318 4.43135 4.46592 4.57727 4.63729 4.70142 4.73491 4.85443 4.95938 5.04398 5.24191 5.30365 5.45982 5.58972 5.68576 5.70269 5.85236 6.02653 6.08768 6.14306 6.25366 6.36807 6.72976 6.77030 7.04308 8.23208 8.45081 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017005 B = 0.005767 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.225325 B = 4853.861736 C = 6162.495029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.324 5.324 3 C 0.089 3.911 4 C -0.222 4.222 5 C -0.058 4.058 6 C -0.044 4.044 7 C -0.229 4.229 8 C -0.045 4.045 9 C -0.310 4.310 10 C 0.104 3.896 11 N -0.522 5.522 12 C 0.236 3.764 13 C -0.450 4.450 14 H 0.094 0.906 15 C 0.028 3.972 16 N -0.750 5.750 17 Si 0.971 3.029 18 H -0.256 1.256 19 H -0.265 1.265 20 H -0.264 1.264 21 C -0.053 4.053 22 C -0.132 4.132 23 C 0.079 3.921 24 N -0.354 5.354 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.128 0.872 28 H 0.233 0.767 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.136 0.864 33 H 0.279 0.721 34 H 0.116 0.884 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.217 1.835 -3.608 16.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.098 5.098 3 C -0.068 4.068 4 C -0.232 4.232 5 C -0.079 4.079 6 C -0.047 4.047 7 C -0.234 4.234 8 C -0.070 4.070 9 C -0.333 4.333 10 C -0.062 4.062 11 N -0.234 5.234 12 C 0.112 3.888 13 C -0.481 4.481 14 H 0.112 0.888 15 C -0.195 4.195 16 N -0.372 5.372 17 Si 0.791 3.209 18 H -0.181 1.181 19 H -0.190 1.190 20 H -0.188 1.188 21 C -0.076 4.076 22 C -0.153 4.153 23 C -0.073 4.073 24 N -0.184 5.184 25 H 0.117 0.883 26 H 0.112 0.888 27 H 0.147 0.853 28 H 0.249 0.751 29 H 0.148 0.852 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.153 0.847 33 H 0.089 0.911 34 H 0.134 0.866 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.423 0.526 -2.869 16.680 hybrid contribution 0.450 0.373 -0.092 0.592 sum -15.973 0.899 -2.961 16.270 Atomic orbital electron populations 1.22498 0.70764 1.06853 1.05661 1.48860 1.09017 1.03301 1.48588 1.23330 0.88957 0.94768 0.99776 1.19814 0.94175 0.93108 1.16100 1.20647 0.88980 0.98893 0.99333 1.18325 0.91857 0.92433 1.02041 1.19649 0.95967 1.04118 1.03668 1.21278 0.96277 0.93404 0.95993 1.21544 0.96782 1.08373 1.06624 1.23016 0.98469 0.93468 0.91198 1.68695 1.21050 1.09620 1.24055 1.18955 0.86922 0.91723 0.91185 1.19944 1.01088 1.15067 1.11952 0.88782 1.26922 0.94109 0.98957 0.99465 1.70238 1.03844 1.33772 1.29354 0.85426 0.78938 0.78570 0.77930 1.18055 1.18953 1.18807 1.20822 0.97343 0.94066 0.95329 1.19788 0.88417 0.99401 1.07681 1.21098 0.92393 0.94031 0.99734 1.77466 1.01127 1.06464 1.33311 0.88268 0.88787 0.85347 0.75094 0.85170 0.85662 0.85532 0.84700 0.91056 0.86560 0.85069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 11.38 127.77 1.45 2.31 16 2 N -0.32 -7.62 3.95 -367.48 -1.45 -9.07 16 3 C 0.09 2.04 11.52 84.46 0.97 3.02 16 4 C -0.22 -7.46 6.32 -20.25 -0.13 -7.59 16 5 C -0.06 -2.16 9.58 22.92 0.22 -1.94 16 6 C -0.04 -1.93 5.03 -20.08 -0.10 -2.03 16 7 C -0.23 -11.16 5.50 -19.52 -0.11 -11.27 16 8 C -0.05 -1.98 9.60 22.67 0.22 -1.76 16 9 C -0.31 -13.40 10.10 22.48 0.23 -13.17 16 10 C 0.10 5.07 11.17 84.99 0.95 6.02 16 11 N -0.52 -29.40 7.85 -188.39 -1.48 -30.88 16 12 C 0.24 13.09 6.55 40.36 0.26 13.35 16 13 C -0.45 -24.51 7.91 23.30 0.18 -24.33 16 14 H 0.09 4.92 5.24 -2.91 -0.02 4.90 16 15 C 0.03 1.45 5.50 85.28 0.47 1.91 16 16 N -0.75 -40.92 11.46 21.84 0.25 -40.67 16 17 Si 0.97 39.34 29.56 68.60 2.03 41.37 16 18 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 19 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 20 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 21 C -0.05 -2.26 7.37 22.24 0.16 -2.10 16 22 C -0.13 -5.09 10.05 22.36 0.22 -4.86 16 23 C 0.08 2.93 7.49 42.27 0.32 3.25 16 24 N -0.35 -11.93 12.53 -48.55 -0.61 -12.53 16 25 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.13 0.43 8.13 -2.39 -0.02 0.41 16 28 H 0.23 2.68 8.06 -2.91 -0.02 2.66 16 29 H 0.13 4.31 8.01 -2.91 -0.02 4.28 16 30 H 0.13 4.62 8.05 -2.91 -0.02 4.59 16 31 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 32 H 0.14 5.79 8.06 -2.91 -0.02 5.77 16 33 H 0.28 13.79 8.29 -92.72 -0.77 13.03 16 34 H 0.12 5.17 7.19 -2.91 -0.02 5.14 16 35 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -73.23 305.13 5.18 -68.05 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 1.12 Total: 22.90 kcal Atomic # 6 Polarization: -44.50 SS G_CDS: 5.33 Total: -39.17 kcal Atomic # 7 Polarization: -89.86 SS G_CDS: -3.29 Total: -93.15 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Total: -73.23 5.18 -68.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241606561.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.246 kcal (2) G-P(sol) polarization free energy of solvation -73.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds