Wall clock time and date at job start Tue Mar 31 2020 01:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.33992 * 125.00691 * 2 1 4 4 C 1.38619 * 107.79843 * 180.15176 * 3 2 1 5 5 C 1.40613 * 134.65895 * 179.90662 * 4 3 2 6 6 C 1.38526 * 119.32099 * 179.68530 * 5 4 3 7 7 C 1.47565 * 119.41325 * 180.02562 * 6 5 4 8 8 C 1.39499 * 120.80219 * 310.00232 * 7 6 5 9 9 N 1.31580 * 120.63604 * 179.97438 * 8 7 6 10 10 C 1.32302 * 122.52832 * 0.02562 * 9 8 7 11 11 C 1.36357 * 121.55116 * 0.02562 * 10 9 8 12 12 C 1.41183 * 119.12416 * 359.70165 * 11 10 9 13 13 C 1.40773 * 121.11913 * 180.30182 * 12 11 10 14 14 H 1.08004 * 120.00010 * 154.70802 * 13 12 11 15 15 C 1.40062 * 120.00077 * 334.70183 * 13 12 11 16 16 N 1.30753 * 119.99577 * 344.70077 * 15 13 12 17 17 Si 1.86802 * 120.00200 * 164.70293 * 15 13 12 18 18 H 1.48498 * 109.46939 * 89.99943 * 17 15 13 19 19 H 1.48488 * 109.47045 * 210.00169 * 17 15 13 20 20 H 1.48501 * 109.46900 * 330.00217 * 17 15 13 21 21 C 1.40953 * 121.17721 * 359.97438 * 6 5 4 22 22 C 1.35212 * 121.65979 * 359.97438 * 21 6 5 23 23 C 1.41417 * 119.96714 * 0.04930 * 22 21 6 24 24 N 1.31947 * 134.34540 * 179.97438 * 23 22 21 25 25 H 1.09005 * 109.46856 * 270.25626 * 1 2 3 26 26 H 1.09000 * 109.47250 * 30.25081 * 1 2 3 27 27 H 1.08999 * 109.47873 * 150.25681 * 1 2 3 28 28 H 1.07998 * 126.10007 * 0.07915 * 3 2 1 29 29 H 1.08000 * 120.34457 * 359.66296 * 5 4 3 30 30 H 1.08004 * 119.67994 * 359.95372 * 8 7 6 31 31 H 1.08000 * 119.23003 * 179.97438 * 10 9 8 32 32 H 1.08001 * 120.43772 * 179.97438 * 11 10 9 33 33 H 0.96999 * 119.99632 * 179.97438 * 16 15 13 34 34 H 1.08007 * 119.17113 * 180.02562 * 21 6 5 35 35 H 1.07999 * 120.01384 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2336 1.0975 0.0000 4 6 3.5577 0.6874 -0.0035 5 6 4.7977 1.3504 -0.0068 6 6 5.9654 0.6052 -0.0032 7 6 7.2679 1.2989 -0.0061 8 6 7.5364 2.3104 -0.9285 9 7 8.6987 2.9271 -0.9278 10 6 9.6613 2.6299 -0.0702 11 6 9.5024 1.6567 0.8716 12 6 8.2787 0.9554 0.9353 13 6 8.0670 -0.0528 1.8947 14 1 7.0635 -0.2920 2.2142 15 6 9.1579 -0.7456 2.4349 16 7 10.3267 -0.6808 1.8525 17 14 8.9428 -1.7622 3.9873 18 1 8.5605 -3.1496 3.6213 19 1 10.2193 -1.7840 4.7454 20 1 7.8773 -1.1608 4.8290 21 6 5.9318 -0.8039 0.0042 22 6 4.7643 -1.4859 0.0086 23 6 3.5364 -0.7844 0.0048 24 7 2.2675 -1.1461 0.0070 25 1 -0.3633 0.0046 1.0277 26 1 -0.3634 0.8877 -0.5177 27 1 -0.3635 -0.8922 -0.5098 28 1 1.8839 2.1193 0.0012 29 1 4.8394 2.4296 -0.0124 30 1 6.7832 2.5897 -1.6503 31 1 10.5953 3.1701 -0.1177 32 1 10.3004 1.4285 1.5626 33 1 11.0823 -1.1604 2.2269 34 1 6.8620 -1.3527 0.0072 35 1 4.7695 -2.5659 0.0147 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241606806.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:51 Heat of formation + Delta-G solvation = 118.761332 kcal Electronic energy + Delta-G solvation = -20318.948034 eV Core-core repulsion = 17282.936667 eV Total energy + Delta-G solvation = -3036.011366 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.80821 -38.53219 -36.55830 -34.22162 -32.79802 -31.26526 -30.69793 -29.89264 -27.79101 -26.74190 -25.80206 -22.83818 -21.91969 -21.38586 -20.11650 -20.06730 -17.62174 -16.71581 -16.44629 -15.59044 -15.41705 -15.16729 -14.51429 -14.36089 -13.56303 -13.48241 -13.18155 -12.96895 -12.78254 -12.60971 -12.53536 -12.19976 -11.70167 -11.48311 -11.24375 -11.12658 -10.94691 -10.72017 -10.33148 -9.89852 -9.82833 -9.75661 -9.46770 -8.25756 -8.03316 -7.93154 -7.67159 -7.00823 -6.70905 -4.62922 1.05654 2.23606 2.57514 2.70262 2.79722 2.99574 3.02231 3.04795 3.22836 3.80786 4.42441 4.49544 4.59159 4.79146 4.97068 5.13514 5.22426 5.47953 5.59626 5.69208 5.81391 5.89639 6.07617 6.14912 6.31731 6.47260 6.67598 6.81528 6.87538 6.99851 7.05880 7.08003 7.14947 7.33860 7.39523 7.51468 7.57814 7.83856 8.03327 8.06676 8.40680 8.65618 8.70137 9.61382 9.96152 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016960 B = 0.005727 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.551071 B = 4887.769845 C = 6197.598994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.337 5.337 3 C 0.050 3.950 4 C -0.184 4.184 5 C -0.082 4.082 6 C -0.003 4.003 7 C -0.229 4.229 8 C 0.128 3.872 9 N -0.579 5.579 10 C 0.079 3.921 11 C -0.207 4.207 12 C 0.144 3.856 13 C -0.439 4.439 14 H 0.087 0.913 15 C 0.078 3.922 16 N -0.779 5.779 17 Si 0.908 3.092 18 H -0.266 1.266 19 H -0.274 1.274 20 H -0.258 1.258 21 C -0.034 4.034 22 C -0.130 4.130 23 C 0.102 3.898 24 N -0.323 5.323 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.178 0.822 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.126 0.874 33 H 0.285 0.715 34 H 0.134 0.866 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.387 0.417 -0.380 12.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.112 5.112 3 C -0.104 4.104 4 C -0.193 4.193 5 C -0.103 4.103 6 C -0.005 4.005 7 C -0.235 4.235 8 C -0.031 4.031 9 N -0.293 5.293 10 C -0.068 4.068 11 C -0.229 4.229 12 C 0.136 3.864 13 C -0.469 4.469 14 H 0.105 0.895 15 C -0.143 4.143 16 N -0.403 5.403 17 Si 0.731 3.269 18 H -0.191 1.191 19 H -0.199 1.199 20 H -0.182 1.182 21 C -0.056 4.056 22 C -0.152 4.152 23 C -0.051 4.051 24 N -0.152 5.152 25 H 0.095 0.905 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.195 0.805 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.143 0.857 33 H 0.096 0.904 34 H 0.152 0.848 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.944 -0.012 -0.968 12.980 hybrid contribution 0.330 -0.476 1.396 1.512 sum -12.614 -0.489 0.428 12.631 Atomic orbital electron populations 1.21918 0.74514 1.04577 1.03546 1.48290 1.06944 1.04208 1.51797 1.22533 0.90643 0.92752 1.04480 1.19539 0.92810 0.93485 1.13490 1.20543 0.89071 0.98429 1.02251 1.18355 0.91900 0.92061 0.98181 1.19537 0.96011 1.05218 1.02718 1.22138 0.93523 0.91759 0.95654 1.67299 1.02283 1.31618 1.28124 1.21690 0.96300 0.96007 0.92828 1.21899 1.00262 0.98447 1.02325 1.17747 0.89820 0.89832 0.88989 1.19571 0.94456 1.14651 1.18236 0.89460 1.26013 0.94415 0.96289 0.97562 1.69772 1.01585 1.33243 1.35692 0.86289 0.79123 0.80208 0.81230 1.19062 1.19906 1.18200 1.21016 0.97482 0.94134 0.92997 1.19708 0.88376 0.98795 1.08279 1.20993 0.92002 0.93116 0.98993 1.77518 1.01399 1.04384 1.31852 0.90479 0.89349 0.89121 0.80480 0.86487 0.86122 0.86554 0.85673 0.90383 0.84781 0.86220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.76 11.38 59.84 0.68 1.44 16 2 N -0.34 -4.66 3.95 -67.51 -0.27 -4.92 16 3 C 0.05 0.69 11.52 -16.47 -0.19 0.50 16 4 C -0.18 -3.25 6.32 -105.22 -0.66 -3.92 16 5 C -0.08 -1.55 9.56 -38.58 -0.37 -1.92 16 6 C 0.00 -0.06 5.00 -104.96 -0.52 -0.58 16 7 C -0.23 -5.36 5.50 -104.05 -0.57 -5.93 16 8 C 0.13 2.91 10.66 -17.19 -0.18 2.73 16 9 N -0.58 -13.88 10.32 -13.35 -0.14 -14.02 16 10 C 0.08 1.87 11.08 -18.03 -0.20 1.67 16 11 C -0.21 -5.16 8.72 -39.14 -0.34 -5.50 16 12 C 0.14 3.62 5.58 -106.24 -0.59 3.03 16 13 C -0.44 -10.78 7.23 -37.94 -0.27 -11.05 16 14 H 0.09 2.13 6.71 -52.48 -0.35 1.78 16 15 C 0.08 1.82 5.22 -17.33 -0.09 1.73 16 16 N -0.78 -18.68 10.92 55.55 0.61 -18.07 16 17 Si 0.91 17.76 29.59 -169.99 -5.03 12.73 16 18 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 19 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 20 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 21 C -0.03 -0.69 7.89 -39.63 -0.31 -1.00 16 22 C -0.13 -2.46 10.06 -39.45 -0.40 -2.86 16 23 C 0.10 1.93 7.49 -82.97 -0.62 1.31 16 24 N -0.32 -5.75 12.53 33.31 0.42 -5.34 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.09 0.43 8.13 -51.93 -0.42 0.01 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.18 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.12 2.01 8.02 -52.49 -0.42 1.59 16 30 H 0.12 2.44 8.03 -52.48 -0.42 2.02 16 31 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 32 H 0.13 3.15 6.24 -52.49 -0.33 2.83 16 33 H 0.29 6.22 8.29 -40.82 -0.34 5.88 16 34 H 0.13 2.82 7.30 -52.48 -0.38 2.43 16 35 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 305.00 15.07 4.60 4.60 Total: -1.00 -29.91 305.00 -8.04 -37.95 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -3.58 Total: 7.42 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -4.65 Total: -20.35 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.62 Total: -42.35 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.73 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.91 -8.04 -37.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241606806.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.716 kcal (2) G-P(sol) polarization free energy of solvation -29.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds