Wall clock time and date at job start Tue Mar 31 2020 01:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.33992 * 125.00691 * 2 1 4 4 C 1.38619 * 107.79843 * 180.15176 * 3 2 1 5 5 C 1.40613 * 134.65895 * 179.90662 * 4 3 2 6 6 C 1.38526 * 119.32099 * 179.68530 * 5 4 3 7 7 C 1.47565 * 119.41325 * 180.02562 * 6 5 4 8 8 C 1.39499 * 120.80219 * 310.00232 * 7 6 5 9 9 N 1.31580 * 120.63604 * 179.97438 * 8 7 6 10 10 C 1.32302 * 122.52832 * 0.02562 * 9 8 7 11 11 C 1.36357 * 121.55116 * 0.02562 * 10 9 8 12 12 C 1.41183 * 119.12416 * 359.70165 * 11 10 9 13 13 C 1.40773 * 121.11913 * 180.30182 * 12 11 10 14 14 H 1.08004 * 120.00010 * 154.70802 * 13 12 11 15 15 C 1.40062 * 120.00077 * 334.70183 * 13 12 11 16 16 N 1.30753 * 119.99577 * 344.70077 * 15 13 12 17 17 Si 1.86802 * 120.00200 * 164.70293 * 15 13 12 18 18 H 1.48498 * 109.46939 * 89.99943 * 17 15 13 19 19 H 1.48488 * 109.47045 * 210.00169 * 17 15 13 20 20 H 1.48501 * 109.46900 * 330.00217 * 17 15 13 21 21 C 1.40953 * 121.17721 * 359.97438 * 6 5 4 22 22 C 1.35212 * 121.65979 * 359.97438 * 21 6 5 23 23 C 1.41417 * 119.96714 * 0.04930 * 22 21 6 24 24 N 1.31947 * 134.34540 * 179.97438 * 23 22 21 25 25 H 1.09005 * 109.46856 * 270.25626 * 1 2 3 26 26 H 1.09000 * 109.47250 * 30.25081 * 1 2 3 27 27 H 1.08999 * 109.47873 * 150.25681 * 1 2 3 28 28 H 1.07998 * 126.10007 * 0.07915 * 3 2 1 29 29 H 1.08000 * 120.34457 * 359.66296 * 5 4 3 30 30 H 1.08004 * 119.67994 * 359.95372 * 8 7 6 31 31 H 1.08000 * 119.23003 * 179.97438 * 10 9 8 32 32 H 1.08001 * 120.43772 * 179.97438 * 11 10 9 33 33 H 0.96999 * 119.99632 * 179.97438 * 16 15 13 34 34 H 1.08007 * 119.17113 * 180.02562 * 21 6 5 35 35 H 1.07999 * 120.01384 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2336 1.0975 0.0000 4 6 3.5577 0.6874 -0.0035 5 6 4.7977 1.3504 -0.0068 6 6 5.9654 0.6052 -0.0032 7 6 7.2679 1.2989 -0.0061 8 6 7.5364 2.3104 -0.9285 9 7 8.6987 2.9271 -0.9278 10 6 9.6613 2.6299 -0.0702 11 6 9.5024 1.6567 0.8716 12 6 8.2787 0.9554 0.9353 13 6 8.0670 -0.0528 1.8947 14 1 7.0635 -0.2920 2.2142 15 6 9.1579 -0.7456 2.4349 16 7 10.3267 -0.6808 1.8525 17 14 8.9428 -1.7622 3.9873 18 1 8.5605 -3.1496 3.6213 19 1 10.2193 -1.7840 4.7454 20 1 7.8773 -1.1608 4.8290 21 6 5.9318 -0.8039 0.0042 22 6 4.7643 -1.4859 0.0086 23 6 3.5364 -0.7844 0.0048 24 7 2.2675 -1.1461 0.0070 25 1 -0.3633 0.0046 1.0277 26 1 -0.3634 0.8877 -0.5177 27 1 -0.3635 -0.8922 -0.5098 28 1 1.8839 2.1193 0.0012 29 1 4.8394 2.4296 -0.0124 30 1 6.7832 2.5897 -1.6503 31 1 10.5953 3.1701 -0.1177 32 1 10.3004 1.4285 1.5626 33 1 11.0823 -1.1604 2.2269 34 1 6.8620 -1.3527 0.0072 35 1 4.7695 -2.5659 0.0147 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241606806.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:50 Heat of formation + Delta-G solvation = 101.949320 kcal Electronic energy + Delta-G solvation = -20319.677057 eV Core-core repulsion = 17282.936667 eV Total energy + Delta-G solvation = -3036.740390 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = -0.49 seconds Orbital eigenvalues (eV) -42.05829 -40.27450 -37.99827 -36.01026 -34.09248 -32.60202 -32.33000 -31.55890 -29.19767 -28.01590 -27.49483 -24.25098 -23.48866 -23.01399 -21.68305 -21.33638 -19.43363 -18.03942 -17.63579 -17.32115 -16.70887 -16.43513 -16.23783 -16.04683 -14.95213 -14.79426 -14.74588 -14.36792 -14.06149 -13.92426 -13.85388 -13.66934 -13.23852 -13.10893 -12.88308 -12.72812 -12.35337 -12.12580 -11.92998 -11.61480 -11.26587 -11.16772 -11.10191 -9.90201 -9.86105 -9.58476 -9.29244 -8.73336 -8.19797 -6.47357 -0.23827 0.62495 1.01786 1.22288 1.38043 1.49098 1.55965 1.58956 1.61655 2.17238 2.78248 3.01617 3.32442 3.77205 3.81630 4.05598 4.21068 4.26401 4.34884 4.43857 4.48718 4.59297 4.66232 4.70740 4.73810 4.95463 5.02876 5.06456 5.24419 5.35564 5.44479 5.57328 5.61297 5.67838 5.89579 6.03263 6.05255 6.14849 6.26381 6.56960 6.74085 6.82810 6.87138 7.77322 8.22818 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016960 B = 0.005727 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.551071 B = 4887.769845 C = 6197.598994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.324 5.324 3 C 0.091 3.909 4 C -0.223 4.223 5 C -0.054 4.054 6 C -0.046 4.046 7 C -0.226 4.226 8 C 0.117 3.883 9 N -0.589 5.589 10 C 0.074 3.926 11 C -0.229 4.229 12 C 0.115 3.885 13 C -0.457 4.457 14 H 0.080 0.920 15 C 0.044 3.956 16 N -0.807 5.807 17 Si 0.973 3.027 18 H -0.261 1.261 19 H -0.262 1.262 20 H -0.262 1.262 21 C -0.045 4.045 22 C -0.135 4.135 23 C 0.080 3.920 24 N -0.356 5.356 25 H 0.096 0.904 26 H 0.130 0.870 27 H 0.094 0.906 28 H 0.234 0.766 29 H 0.134 0.866 30 H 0.147 0.853 31 H 0.139 0.861 32 H 0.115 0.885 33 H 0.293 0.707 34 H 0.112 0.888 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.686 1.333 -0.125 15.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.098 5.098 3 C -0.066 4.066 4 C -0.233 4.233 5 C -0.074 4.074 6 C -0.048 4.048 7 C -0.231 4.231 8 C -0.040 4.040 9 N -0.304 5.304 10 C -0.074 4.074 11 C -0.251 4.251 12 C 0.107 3.893 13 C -0.487 4.487 14 H 0.098 0.902 15 C -0.175 4.175 16 N -0.432 5.432 17 Si 0.794 3.206 18 H -0.186 1.186 19 H -0.186 1.186 20 H -0.186 1.186 21 C -0.067 4.067 22 C -0.156 4.156 23 C -0.071 4.071 24 N -0.185 5.185 25 H 0.115 0.885 26 H 0.148 0.852 27 H 0.113 0.887 28 H 0.250 0.750 29 H 0.151 0.849 30 H 0.164 0.836 31 H 0.157 0.843 32 H 0.133 0.867 33 H 0.104 0.896 34 H 0.130 0.870 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.276 0.881 -0.732 16.316 hybrid contribution 1.006 -0.694 1.244 1.744 sum -15.270 0.187 0.512 15.279 Atomic orbital electron populations 1.22496 0.70784 1.06927 1.05571 1.48866 1.09016 1.03319 1.48594 1.23350 0.88940 0.94781 0.99533 1.19810 0.94210 0.93022 1.16254 1.20686 0.88894 0.99015 0.98805 1.18268 0.91727 0.92328 1.02518 1.19804 0.96740 1.04828 1.01705 1.22539 0.93769 0.91733 0.95975 1.67359 1.02735 1.32115 1.28198 1.22000 0.97186 0.95812 0.92399 1.21891 1.00374 0.99618 1.03231 1.18130 0.90706 0.90537 0.89892 1.19631 0.94605 1.15373 1.19110 0.90216 1.26725 0.93826 0.96990 0.99929 1.69807 1.02331 1.34112 1.36923 0.85323 0.79217 0.78604 0.77494 1.18598 1.18641 1.18595 1.20755 0.97098 0.94110 0.94740 1.19756 0.88501 0.99270 1.08119 1.21089 0.92333 0.94085 0.99569 1.77480 1.01153 1.06482 1.33435 0.88528 0.85188 0.88716 0.74999 0.84852 0.83586 0.84339 0.86730 0.89596 0.87043 0.85411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 11.38 127.77 1.45 2.30 16 2 N -0.32 -7.57 3.95 -367.50 -1.45 -9.02 16 3 C 0.09 2.06 11.52 84.45 0.97 3.04 16 4 C -0.22 -7.39 6.32 -20.25 -0.13 -7.52 16 5 C -0.05 -1.95 9.56 22.92 0.22 -1.73 16 6 C -0.05 -1.98 5.00 -20.08 -0.10 -2.08 16 7 C -0.23 -10.85 5.50 -19.49 -0.11 -10.96 16 8 C 0.12 5.37 10.66 85.03 0.91 6.27 16 9 N -0.59 -28.45 10.32 -196.14 -2.02 -30.47 16 10 C 0.07 3.59 11.08 84.18 0.93 4.52 16 11 C -0.23 -11.87 8.72 22.55 0.20 -11.68 16 12 C 0.12 6.05 5.58 -20.92 -0.12 5.94 16 13 C -0.46 -23.50 7.23 23.33 0.17 -23.33 16 14 H 0.08 4.10 6.71 -2.91 -0.02 4.08 16 15 C 0.04 2.09 5.22 85.30 0.44 2.54 16 16 N -0.81 -40.08 10.92 21.85 0.24 -39.85 16 17 Si 0.97 37.17 29.59 68.60 2.03 39.20 16 18 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 19 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 20 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 21 C -0.04 -1.91 7.89 22.24 0.18 -1.73 16 22 C -0.14 -5.27 10.06 22.35 0.22 -5.04 16 23 C 0.08 3.00 7.49 42.26 0.32 3.31 16 24 N -0.36 -11.98 12.53 -48.54 -0.61 -12.59 16 25 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.13 0.38 8.13 -2.39 -0.02 0.36 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.23 2.58 8.06 -2.91 -0.02 2.56 16 29 H 0.13 4.28 8.02 -2.91 -0.02 4.26 16 30 H 0.15 5.78 8.03 -2.91 -0.02 5.76 16 31 H 0.14 5.86 8.06 -2.91 -0.02 5.84 16 32 H 0.11 6.07 6.24 -2.91 -0.02 6.05 16 33 H 0.29 13.11 8.29 -92.71 -0.77 12.34 16 34 H 0.11 5.10 7.30 -2.91 -0.02 5.08 16 35 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -68.32 305.00 4.86 -63.46 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 1.12 Total: 25.43 kcal Atomic # 6 Polarization: -41.72 SS G_CDS: 5.56 Total: -36.16 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -3.84 Total: -91.93 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.20 kcal Total: -68.32 4.86 -63.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241606806.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.405 kcal (2) G-P(sol) polarization free energy of solvation -68.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.49 seconds