Wall clock time and date at job start Tue Mar 31 2020 01:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.33986 * 125.00357 * 2 1 4 4 C 1.38608 * 107.80131 * 180.02562 * 3 2 1 5 5 C 1.40631 * 134.66257 * 180.02562 * 4 3 2 6 6 C 1.38457 * 119.32191 * 179.97438 * 5 4 3 7 7 C 1.47694 * 119.40434 * 180.02562 * 6 5 4 8 8 C 1.40445 * 120.35756 * 180.02562 * 7 6 5 9 9 C 1.36539 * 118.60556 * 180.02562 * 8 7 6 10 10 C 1.40951 * 119.27044 * 359.97438 * 9 8 7 11 11 C 1.40849 * 119.66951 * 179.97438 * 10 9 8 12 12 H 1.07993 * 120.00278 * 353.65858 * 11 10 9 13 13 C 1.39979 * 120.00094 * 173.65826 * 11 10 9 14 14 N 1.30786 * 119.99737 * 6.31555 * 13 11 10 15 15 Si 1.86798 * 120.00146 * 186.32043 * 13 11 10 16 16 H 1.48496 * 109.47209 * 94.98293 * 15 13 11 17 17 H 1.48507 * 109.46872 * 214.98275 * 15 13 11 18 18 H 1.48495 * 109.47151 * 334.98194 * 15 13 11 19 19 N 1.33839 * 120.65957 * 359.97438 * 10 9 8 20 20 C 1.31160 * 121.50496 * 359.73793 * 19 10 9 21 21 C 1.40910 * 121.19447 * 0.02562 * 6 5 4 22 22 C 1.35229 * 121.66446 * 359.97438 * 21 6 5 23 23 C 1.41410 * 119.95816 * 0.02562 * 22 21 6 24 24 N 1.31944 * 134.35573 * 180.38587 * 23 22 21 25 25 H 1.09003 * 109.46767 * 89.99573 * 1 2 3 26 26 H 1.08990 * 109.47296 * 210.00107 * 1 2 3 27 27 H 1.09001 * 109.46917 * 330.00384 * 1 2 3 28 28 H 1.08002 * 126.10093 * 359.96278 * 3 2 1 29 29 H 1.08001 * 120.33945 * 359.94731 * 5 4 3 30 30 H 1.07996 * 120.69642 * 359.97438 * 8 7 6 31 31 H 1.07993 * 120.36413 * 179.97438 * 9 8 7 32 32 H 0.97007 * 119.99868 * 180.02562 * 14 13 11 33 33 H 1.08005 * 119.66283 * 180.28771 * 20 19 10 34 34 H 1.07998 * 119.16968 * 180.02562 * 21 6 5 35 35 H 1.07997 * 120.02078 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2336 1.0975 0.0000 4 6 3.5577 0.6876 -0.0006 5 6 4.7978 1.3507 -0.0004 6 6 5.9650 0.6059 -0.0007 7 6 7.2684 1.3005 0.0001 8 6 8.4648 0.5648 -0.0007 9 6 9.6495 1.2435 0.0006 10 6 9.6364 2.6529 0.0020 11 6 10.8537 3.3615 0.0039 12 1 11.7879 2.8297 0.1075 13 6 10.8526 4.7550 -0.1285 14 7 9.7210 5.4108 -0.1298 15 14 12.4672 5.6779 -0.3036 16 1 12.7592 5.8957 -1.7432 17 1 12.3646 6.9898 0.3847 18 1 13.5612 4.8819 0.3085 19 7 8.4788 3.3246 0.0017 20 6 7.3247 2.7014 -0.0051 21 6 5.9318 -0.8028 -0.0016 22 6 4.7645 -1.4854 -0.0018 23 6 3.5364 -0.7842 -0.0016 24 7 2.2676 -1.1461 0.0047 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.8838 2.1193 -0.0006 29 1 4.8394 2.4299 -0.0006 30 1 8.4479 -0.5150 -0.0014 31 1 10.5864 0.7063 0.0004 32 1 9.7202 6.3765 -0.2219 33 1 6.4085 3.2733 -0.0099 34 1 6.8622 -1.3512 -0.0014 35 1 4.7700 -2.5653 -0.0030 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241608317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:17 Heat of formation + Delta-G solvation = 129.442240 kcal Electronic energy + Delta-G solvation = -19675.655005 eV Core-core repulsion = 16640.106798 eV Total energy + Delta-G solvation = -3035.548207 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.90426 -38.47395 -36.71638 -33.87494 -32.67127 -31.50517 -30.68477 -30.25313 -28.13901 -27.13944 -25.14205 -23.08175 -22.13673 -21.25242 -20.26411 -20.07519 -17.68520 -16.71698 -16.60191 -15.76998 -15.49912 -15.38695 -14.42366 -14.22724 -13.52417 -13.31658 -13.19817 -13.14921 -12.88057 -12.75402 -12.36438 -12.19240 -11.88654 -11.42400 -11.21748 -11.02986 -10.96393 -10.80950 -10.38930 -10.03930 -9.98915 -9.90690 -9.44144 -8.52624 -8.23492 -7.87361 -7.63423 -6.74622 -6.54945 -4.56158 0.90675 2.00021 2.49364 2.64378 2.86882 3.01664 3.05043 3.05698 3.24364 3.83615 4.33857 4.34619 4.73577 4.75866 4.91654 5.02784 5.16563 5.34773 5.55677 5.67038 5.81769 5.85730 5.92693 5.97239 6.13470 6.37010 6.47039 6.66616 6.73714 6.84673 6.93024 6.98994 7.03442 7.12353 7.29205 7.36198 7.61765 7.77272 7.92152 7.94749 8.10994 8.50920 8.80371 10.00180 10.16043 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.039649 B = 0.003398 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.030426 B = 8238.057584 C = 8925.051378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.334 5.334 3 C 0.045 3.955 4 C -0.172 4.172 5 C -0.103 4.103 6 C -0.004 4.004 7 C -0.266 4.266 8 C -0.041 4.041 9 C -0.270 4.270 10 C 0.251 3.749 11 C -0.411 4.411 12 H 0.087 0.913 13 C 0.064 3.936 14 N -0.702 5.702 15 Si 0.911 3.089 16 H -0.268 1.268 17 H -0.274 1.274 18 H -0.260 1.260 19 N -0.489 5.489 20 C 0.152 3.848 21 C -0.069 4.069 22 C -0.112 4.112 23 C 0.089 3.911 24 N -0.320 5.320 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.180 0.820 29 H 0.122 0.878 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.276 0.724 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.925 -4.719 -0.023 12.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.110 5.110 3 C -0.109 4.109 4 C -0.182 4.182 5 C -0.124 4.124 6 C -0.006 4.006 7 C -0.272 4.272 8 C -0.064 4.064 9 C -0.293 4.293 10 C 0.128 3.872 11 C -0.441 4.441 12 H 0.105 0.895 13 C -0.163 4.163 14 N -0.322 5.322 15 Si 0.735 3.265 16 H -0.193 1.193 17 H -0.199 1.199 18 H -0.183 1.183 19 N -0.200 5.200 20 C -0.016 4.016 21 C -0.091 4.091 22 C -0.133 4.133 23 C -0.064 4.064 24 N -0.148 5.148 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.197 0.803 29 H 0.140 0.860 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.918 -4.583 -0.018 13.707 hybrid contribution 1.005 0.183 -0.124 1.029 sum -11.913 -4.400 -0.142 12.700 Atomic orbital electron populations 1.21941 0.74384 1.04666 1.03627 1.48281 1.06994 1.04159 1.51568 1.22546 0.90599 0.92808 1.04939 1.19534 0.92897 0.93260 1.12476 1.20390 0.88920 0.98783 1.04258 1.18477 0.92559 0.91742 0.97847 1.19034 0.90939 0.94513 1.22691 1.20669 0.92348 0.97479 0.95890 1.21416 0.96711 0.95755 1.15375 1.18660 0.92074 0.88437 0.88047 1.19714 0.93130 0.91661 1.39558 0.89475 1.26169 0.97920 0.98407 0.93848 1.70164 1.26820 1.08697 1.26489 0.86247 0.81788 0.79113 0.79380 1.19289 1.19925 1.18342 1.68806 0.96426 1.37049 1.17756 1.22787 0.96563 0.89991 0.92306 1.20843 0.97181 0.94149 0.96950 1.19678 0.88510 0.98676 1.06481 1.20932 0.92007 0.93269 1.00190 1.77486 1.01341 1.04617 1.31403 0.90378 0.89100 0.89245 0.80334 0.86019 0.88295 0.88190 0.91281 0.86005 0.85767 0.86161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.70 11.38 59.85 0.68 1.38 16 2 N -0.33 -4.39 3.95 -67.51 -0.27 -4.65 16 3 C 0.04 0.60 11.52 -16.47 -0.19 0.41 16 4 C -0.17 -2.92 6.32 -105.22 -0.66 -3.59 16 5 C -0.10 -1.86 9.50 -38.60 -0.37 -2.23 16 6 C 0.00 -0.08 5.87 -104.94 -0.62 -0.69 16 7 C -0.27 -5.89 5.92 -104.46 -0.62 -6.51 16 8 C -0.04 -0.89 9.44 -39.36 -0.37 -1.26 16 9 C -0.27 -6.43 9.76 -39.17 -0.38 -6.81 16 10 C 0.25 6.67 6.54 -84.98 -0.56 6.12 16 11 C -0.41 -10.58 9.10 -37.94 -0.35 -10.93 16 12 H 0.09 2.08 7.85 -52.49 -0.41 1.67 16 13 C 0.06 1.55 5.49 -17.34 -0.10 1.46 16 14 N -0.70 -18.01 11.47 55.55 0.64 -17.37 16 15 Si 0.91 17.79 29.56 -169.99 -5.03 12.77 16 16 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 17 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 18 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 19 N -0.49 -13.16 7.85 -10.82 -0.09 -13.25 16 20 C 0.15 3.63 10.58 -17.10 -0.18 3.45 16 21 C -0.07 -1.19 9.29 -39.64 -0.37 -1.56 16 22 C -0.11 -1.87 10.06 -39.45 -0.40 -2.26 16 23 C 0.09 1.57 7.49 -82.98 -0.62 0.94 16 24 N -0.32 -5.35 12.53 33.30 0.42 -4.93 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.40 8.13 -51.93 -0.42 -0.02 16 28 H 0.18 1.63 8.06 -52.49 -0.42 1.21 16 29 H 0.12 2.06 6.12 -52.49 -0.32 1.74 16 30 H 0.10 1.84 6.20 -52.49 -0.33 1.52 16 31 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 32 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 33 H 0.12 2.61 6.14 -52.48 -0.32 2.28 16 34 H 0.12 1.94 6.11 -52.49 -0.32 1.62 16 35 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 304.25 15.07 4.58 4.58 Total: -1.00 -31.62 304.25 -8.20 -39.82 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -3.37 Total: 5.11 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -5.09 Total: -22.09 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.70 Total: -40.20 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.77 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.62 -8.20 -39.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241608317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.265 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds