Wall clock time and date at job start Tue Mar 31 2020 01:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.33986 * 125.00357 * 2 1 4 4 C 1.38608 * 107.80131 * 180.02562 * 3 2 1 5 5 C 1.40631 * 134.66257 * 180.02562 * 4 3 2 6 6 C 1.38457 * 119.32191 * 179.97438 * 5 4 3 7 7 C 1.47694 * 119.40434 * 180.02562 * 6 5 4 8 8 C 1.40445 * 120.35756 * 180.02562 * 7 6 5 9 9 C 1.36539 * 118.60556 * 180.02562 * 8 7 6 10 10 C 1.40951 * 119.27044 * 359.97438 * 9 8 7 11 11 C 1.40849 * 119.66951 * 179.97438 * 10 9 8 12 12 H 1.07993 * 120.00278 * 353.65858 * 11 10 9 13 13 C 1.39979 * 120.00094 * 173.65826 * 11 10 9 14 14 N 1.30786 * 119.99737 * 6.31555 * 13 11 10 15 15 Si 1.86798 * 120.00146 * 186.32043 * 13 11 10 16 16 H 1.48496 * 109.47209 * 94.98293 * 15 13 11 17 17 H 1.48507 * 109.46872 * 214.98275 * 15 13 11 18 18 H 1.48495 * 109.47151 * 334.98194 * 15 13 11 19 19 N 1.33839 * 120.65957 * 359.97438 * 10 9 8 20 20 C 1.31160 * 121.50496 * 359.73793 * 19 10 9 21 21 C 1.40910 * 121.19447 * 0.02562 * 6 5 4 22 22 C 1.35229 * 121.66446 * 359.97438 * 21 6 5 23 23 C 1.41410 * 119.95816 * 0.02562 * 22 21 6 24 24 N 1.31944 * 134.35573 * 180.38587 * 23 22 21 25 25 H 1.09003 * 109.46767 * 89.99573 * 1 2 3 26 26 H 1.08990 * 109.47296 * 210.00107 * 1 2 3 27 27 H 1.09001 * 109.46917 * 330.00384 * 1 2 3 28 28 H 1.08002 * 126.10093 * 359.96278 * 3 2 1 29 29 H 1.08001 * 120.33945 * 359.94731 * 5 4 3 30 30 H 1.07996 * 120.69642 * 359.97438 * 8 7 6 31 31 H 1.07993 * 120.36413 * 179.97438 * 9 8 7 32 32 H 0.97007 * 119.99868 * 180.02562 * 14 13 11 33 33 H 1.08005 * 119.66283 * 180.28771 * 20 19 10 34 34 H 1.07998 * 119.16968 * 180.02562 * 21 6 5 35 35 H 1.07997 * 120.02078 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2336 1.0975 0.0000 4 6 3.5577 0.6876 -0.0006 5 6 4.7978 1.3507 -0.0004 6 6 5.9650 0.6059 -0.0007 7 6 7.2684 1.3005 0.0001 8 6 8.4648 0.5648 -0.0007 9 6 9.6495 1.2435 0.0006 10 6 9.6364 2.6529 0.0020 11 6 10.8537 3.3615 0.0039 12 1 11.7879 2.8297 0.1075 13 6 10.8526 4.7550 -0.1285 14 7 9.7210 5.4108 -0.1298 15 14 12.4672 5.6779 -0.3036 16 1 12.7592 5.8957 -1.7432 17 1 12.3646 6.9898 0.3847 18 1 13.5612 4.8819 0.3085 19 7 8.4788 3.3246 0.0017 20 6 7.3247 2.7014 -0.0051 21 6 5.9318 -0.8028 -0.0016 22 6 4.7645 -1.4854 -0.0018 23 6 3.5364 -0.7842 -0.0016 24 7 2.2676 -1.1461 0.0047 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.8838 2.1193 -0.0006 29 1 4.8394 2.4299 -0.0006 30 1 8.4479 -0.5150 -0.0014 31 1 10.5864 0.7063 0.0004 32 1 9.7202 6.3765 -0.2219 33 1 6.4085 3.2733 -0.0099 34 1 6.8622 -1.3512 -0.0014 35 1 4.7700 -2.5653 -0.0030 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241608317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:15 Heat of formation + Delta-G solvation = 111.177173 kcal Electronic energy + Delta-G solvation = -19676.447038 eV Core-core repulsion = 16640.106798 eV Total energy + Delta-G solvation = -3036.340240 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.08597 -40.19945 -38.10031 -35.57168 -33.94354 -32.87752 -32.28015 -31.84993 -29.57902 -28.28051 -26.74120 -24.47999 -23.72877 -22.71752 -21.77546 -21.33481 -19.45324 -17.97375 -17.85013 -17.34401 -16.88383 -16.46189 -16.05729 -15.82126 -14.88335 -14.71888 -14.59281 -14.34426 -14.21177 -13.90880 -13.88021 -13.56689 -13.26865 -12.94520 -12.71238 -12.60003 -12.37201 -12.33448 -11.96728 -11.71661 -11.32309 -11.18514 -11.07579 -10.20977 -9.79843 -9.47232 -9.32435 -8.32926 -8.22216 -6.41516 -0.31697 0.49033 1.13176 1.32220 1.41952 1.49984 1.56697 1.57421 1.69831 2.22435 2.76182 3.14685 3.28470 3.77980 3.99334 4.12446 4.14752 4.16820 4.35116 4.38176 4.41926 4.47442 4.58013 4.68439 4.69408 4.87618 4.95652 4.98867 5.18025 5.25005 5.44631 5.52162 5.60273 5.60816 5.81479 6.00676 6.04719 6.12934 6.16395 6.30706 6.70161 6.70750 6.95189 8.17877 8.40870 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.039649 B = 0.003398 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.030426 B = 8238.057584 C = 8925.051378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.323 5.323 3 C 0.081 3.919 4 C -0.217 4.217 5 C -0.080 4.080 6 C -0.045 4.045 7 C -0.249 4.249 8 C -0.046 4.046 9 C -0.285 4.285 10 C 0.217 3.783 11 C -0.454 4.454 12 H 0.093 0.907 13 C 0.020 3.980 14 N -0.748 5.748 15 Si 0.990 3.010 16 H -0.264 1.264 17 H -0.267 1.267 18 H -0.253 1.253 19 N -0.522 5.522 20 C 0.124 3.876 21 C -0.074 4.074 22 C -0.116 4.116 23 C 0.071 3.929 24 N -0.351 5.351 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.127 0.873 28 H 0.228 0.772 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.113 0.887 32 H 0.281 0.719 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.375 -5.069 -0.092 15.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.097 5.097 3 C -0.076 4.076 4 C -0.226 4.226 5 C -0.100 4.100 6 C -0.047 4.047 7 C -0.254 4.254 8 C -0.069 4.069 9 C -0.308 4.308 10 C 0.093 3.907 11 C -0.484 4.484 12 H 0.111 0.889 13 C -0.202 4.202 14 N -0.369 5.369 15 Si 0.810 3.190 16 H -0.188 1.188 17 H -0.191 1.191 18 H -0.177 1.177 19 N -0.234 5.234 20 C -0.042 4.042 21 C -0.096 4.096 22 C -0.137 4.137 23 C -0.081 4.081 24 N -0.180 5.180 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.145 0.855 28 H 0.244 0.756 29 H 0.145 0.855 30 H 0.150 0.850 31 H 0.131 0.869 32 H 0.092 0.908 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.433 -4.984 -0.084 16.218 hybrid contribution 1.197 0.133 -0.097 1.208 sum -14.236 -4.851 -0.181 15.041 Atomic orbital electron populations 1.22495 0.70822 1.06879 1.05617 1.48843 1.09000 1.03296 1.48609 1.23303 0.89258 0.94714 1.00353 1.19800 0.94034 0.93330 1.15478 1.20578 0.89370 0.99086 1.00977 1.18440 0.91605 0.92873 1.01829 1.19334 0.92561 0.94038 1.19467 1.21037 0.91609 0.99214 0.95037 1.21616 0.98149 0.95125 1.15869 1.19103 0.92511 0.89886 0.89162 1.20018 0.93249 0.92952 1.42199 0.88937 1.27078 1.01644 0.98748 0.92747 1.70255 1.29186 1.09186 1.28254 0.85075 0.76954 0.77612 0.79356 1.18848 1.19133 1.17669 1.68734 0.97317 1.38416 1.18952 1.23124 0.96452 0.91252 0.93374 1.20872 0.98144 0.93268 0.97347 1.19896 0.88168 0.99711 1.05956 1.21221 0.92674 0.93874 1.00300 1.77454 1.01216 1.06455 1.32888 0.88403 0.88556 0.85512 0.75571 0.85502 0.84981 0.86906 0.90799 0.84556 0.84529 0.84213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 11.38 127.77 1.45 2.24 16 2 N -0.32 -7.18 3.95 -367.50 -1.45 -8.63 16 3 C 0.08 1.80 11.52 84.45 0.97 2.77 16 4 C -0.22 -6.85 6.32 -20.25 -0.13 -6.98 16 5 C -0.08 -2.79 9.50 22.91 0.22 -2.58 16 6 C -0.05 -1.74 5.87 -20.07 -0.12 -1.86 16 7 C -0.25 -11.15 5.92 -19.76 -0.12 -11.27 16 8 C -0.05 -2.01 9.44 22.41 0.21 -1.80 16 9 C -0.29 -14.01 9.76 22.54 0.22 -13.79 16 10 C 0.22 12.11 6.54 40.14 0.26 12.37 16 11 C -0.45 -24.48 9.10 23.33 0.21 -24.27 16 12 H 0.09 4.62 7.85 -2.91 -0.02 4.60 16 13 C 0.02 1.03 5.49 85.27 0.47 1.50 16 14 N -0.75 -40.06 11.47 21.83 0.25 -39.81 16 15 Si 0.99 37.46 29.56 68.60 2.03 39.49 16 16 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 17 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 18 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 19 N -0.52 -29.42 7.85 -188.16 -1.48 -30.90 16 20 C 0.12 6.11 10.58 85.27 0.90 7.02 16 21 C -0.07 -2.52 9.29 22.23 0.21 -2.31 16 22 C -0.12 -3.72 10.06 22.36 0.22 -3.50 16 23 C 0.07 2.37 7.49 42.26 0.32 2.69 16 24 N -0.35 -10.86 12.53 -48.55 -0.61 -11.47 16 25 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.13 0.37 8.13 -2.39 -0.02 0.35 16 28 H 0.23 2.73 8.06 -2.91 -0.02 2.71 16 29 H 0.13 4.18 6.12 -2.91 -0.02 4.16 16 30 H 0.13 4.80 6.20 -2.91 -0.02 4.78 16 31 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 32 H 0.28 13.51 8.30 -92.70 -0.77 12.74 16 33 H 0.14 6.01 6.14 -2.91 -0.02 5.99 16 34 H 0.14 4.11 6.11 -2.91 -0.02 4.09 16 35 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -72.88 304.25 5.18 -67.70 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 1.13 Total: 23.38 kcal Atomic # 6 Polarization: -45.07 SS G_CDS: 5.31 Total: -39.77 kcal Atomic # 7 Polarization: -87.52 SS G_CDS: -3.29 Total: -90.80 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 2.03 Total: 39.49 kcal Total: -72.88 5.18 -67.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241608317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.878 kcal (2) G-P(sol) polarization free energy of solvation -72.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds