Wall clock time and date at job start Tue Mar 31 2020 01:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.33991 * 125.02037 * 2 1 4 4 C 1.38362 * 107.86821 * 179.97438 * 3 2 1 5 5 C 1.40923 * 134.66739 * 179.97438 * 4 3 2 6 6 C 1.37753 * 119.35274 * 180.02562 * 5 4 3 7 7 C 1.48346 * 119.34980 * 180.28498 * 6 5 4 8 8 C 1.39747 * 120.41599 * 359.45417 * 7 6 5 9 9 N 1.31907 * 121.14519 * 179.74580 * 8 7 6 10 10 C 1.31523 * 122.12150 * 0.54358 * 9 8 7 11 11 C 1.40781 * 120.67612 * 359.72027 * 10 9 8 12 12 C 1.41436 * 120.60594 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00157 * 155.57138 * 12 11 10 14 14 C 1.39928 * 120.00165 * 335.58279 * 12 11 10 15 15 N 1.30832 * 119.99874 * 342.34039 * 14 12 11 16 16 Si 1.86802 * 120.00412 * 162.34552 * 14 12 11 17 17 H 1.48497 * 109.47062 * 94.67184 * 16 14 12 18 18 H 1.48491 * 109.47164 * 214.67082 * 16 14 12 19 19 H 1.48503 * 109.46894 * 334.67495 * 16 14 12 20 20 C 1.39171 * 120.41133 * 179.72763 * 7 6 5 21 21 C 1.40716 * 121.29645 * 0.02562 * 6 5 4 22 22 C 1.35349 * 121.70181 * 0.02768 * 21 6 5 23 23 C 1.41264 * 119.89970 * 359.96710 * 22 21 6 24 24 N 1.32055 * 134.42602 * 180.02562 * 23 22 21 25 25 H 1.09005 * 109.46907 * 270.00430 * 1 2 3 26 26 H 1.09005 * 109.46433 * 29.99927 * 1 2 3 27 27 H 1.08992 * 109.47048 * 150.00262 * 1 2 3 28 28 H 1.08001 * 126.05790 * 359.97438 * 3 2 1 29 29 H 1.07993 * 120.32706 * 359.97438 * 5 4 3 30 30 H 1.08000 * 119.42907 * 359.97438 * 8 7 6 31 31 H 1.08003 * 119.66368 * 179.69998 * 10 9 8 32 32 H 0.96996 * 120.00725 * 180.02562 * 15 14 12 33 33 H 1.08000 * 120.95637 * 359.97438 * 20 7 6 34 34 H 1.07997 * 119.15292 * 179.97438 * 21 6 5 35 35 H 1.08000 * 120.04632 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2340 1.0973 0.0000 4 6 3.5561 0.6893 0.0006 5 6 4.7982 1.3548 0.0004 6 6 5.9605 0.6153 0.0007 7 6 7.2680 1.3159 0.0069 8 6 7.3225 2.7123 0.0010 9 7 8.4771 3.3501 0.0115 10 6 9.6278 2.7131 0.0173 11 6 9.6699 1.3060 0.0184 12 6 10.9081 0.6225 0.0240 13 1 10.9678 -0.3837 0.4117 14 6 12.0560 1.2502 -0.4724 15 7 11.9451 2.3010 -1.2439 16 14 13.7467 0.5877 -0.0339 17 1 14.2100 -0.3332 -1.1028 18 1 14.7024 1.7167 0.0953 19 1 13.6714 -0.1472 1.2543 20 6 8.4558 0.5907 0.0130 21 6 5.9317 -0.7916 0.0005 22 6 4.7659 -1.4791 -0.0004 23 6 3.5372 -0.7821 -0.0005 24 7 2.2679 -1.1462 -0.0009 25 1 -0.3633 0.0001 1.0277 26 1 -0.3632 0.8901 -0.5139 27 1 -0.3633 -0.8899 -0.5138 28 1 1.8838 2.1190 -0.0004 29 1 4.8387 2.4340 -0.0007 30 1 6.4033 3.2792 -0.0085 31 1 10.5500 3.2754 0.0209 32 1 12.7407 2.7359 -1.5884 33 1 8.4474 -0.4892 0.0137 34 1 6.8639 -1.3368 0.0003 35 1 4.7750 -2.5591 -0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241609792.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:20 Heat of formation + Delta-G solvation = 120.040684 kcal Electronic energy + Delta-G solvation = -19700.182630 eV Core-core repulsion = 16664.226741 eV Total energy + Delta-G solvation = -3035.955889 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.09542 -38.59551 -36.86479 -34.04533 -33.01313 -31.62389 -30.95901 -30.14372 -27.98021 -26.70428 -25.61084 -23.00230 -22.59488 -21.09962 -20.45350 -20.20419 -17.55858 -16.80817 -16.72013 -15.83135 -15.63829 -15.17336 -14.88218 -14.46246 -13.68040 -13.44500 -13.30585 -13.28034 -13.01495 -12.87653 -12.45160 -12.06327 -11.72327 -11.52320 -11.25521 -11.17614 -10.98758 -10.83243 -10.66907 -10.14711 -10.08700 -10.06106 -9.38828 -8.73750 -8.21136 -7.96521 -7.71561 -6.91444 -6.79003 -4.49677 0.75357 1.83583 2.34622 2.51155 2.72260 3.03422 3.07431 3.07685 3.18000 3.85728 4.20214 4.24444 4.58067 4.64487 4.81970 4.89984 5.08290 5.20257 5.36568 5.48255 5.68604 5.70037 5.76996 5.93678 6.14364 6.31772 6.46430 6.63682 6.70483 6.75745 6.75947 6.87051 7.05655 7.13332 7.20655 7.32421 7.63532 7.73893 7.75461 8.06031 8.30237 8.68208 8.71083 9.71117 10.06465 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.041636 B = 0.003441 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.338717 B = 8136.175977 C = 8723.030293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.332 5.332 3 C 0.063 3.937 4 C -0.191 4.191 5 C -0.057 4.057 6 C -0.045 4.045 7 C -0.074 4.074 8 C -0.029 4.029 9 N -0.478 5.478 10 C 0.046 3.954 11 C 0.064 3.936 12 C -0.452 4.452 13 H 0.082 0.918 14 C 0.075 3.925 15 N -0.789 5.789 16 Si 0.912 3.088 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.259 1.259 20 C -0.185 4.185 21 C -0.057 4.057 22 C -0.116 4.116 23 C 0.101 3.899 24 N -0.319 5.319 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.183 0.817 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.150 0.850 32 H 0.285 0.715 33 H 0.107 0.893 34 H 0.132 0.868 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.296 -2.717 1.592 15.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.107 5.107 3 C -0.092 4.092 4 C -0.201 4.201 5 C -0.077 4.077 6 C -0.047 4.047 7 C -0.077 4.077 8 C -0.184 4.184 9 N -0.185 5.185 10 C -0.118 4.118 11 C 0.059 3.941 12 C -0.482 4.482 13 H 0.100 0.900 14 C -0.144 4.144 15 N -0.414 5.414 16 Si 0.736 3.264 17 H -0.195 1.195 18 H -0.199 1.199 19 H -0.183 1.183 20 C -0.210 4.210 21 C -0.079 4.079 22 C -0.137 4.137 23 C -0.052 4.052 24 N -0.147 5.147 25 H 0.098 0.902 26 H 0.109 0.891 27 H 0.111 0.889 28 H 0.200 0.800 29 H 0.145 0.855 30 H 0.138 0.862 31 H 0.167 0.833 32 H 0.096 0.904 33 H 0.125 0.875 34 H 0.150 0.850 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.234 -2.667 1.447 16.515 hybrid contribution 1.199 -0.494 0.025 1.297 sum -15.034 -3.160 1.472 15.433 Atomic orbital electron populations 1.21994 0.74081 1.04874 1.03831 1.48391 1.07225 1.04172 1.50935 1.22567 0.90537 0.93008 1.03090 1.19554 0.92933 0.93525 1.14070 1.20519 0.88982 0.99137 0.99092 1.18587 0.92596 0.92397 1.01163 1.19279 0.91221 0.94464 1.02702 1.21844 0.95123 0.90085 1.11328 1.67131 0.98728 1.41793 1.10842 1.23069 0.94283 0.92205 1.02202 1.18472 0.92756 0.93402 0.89443 1.19520 0.91684 1.01381 1.35627 0.90021 1.25966 1.01822 0.94195 0.92395 1.69770 1.32406 1.17402 1.21848 0.86231 0.80551 0.79439 0.80186 1.19469 1.19854 1.18295 1.21413 0.91485 0.98085 1.10044 1.20894 0.97712 0.93854 0.95420 1.19718 0.88286 0.99020 1.06693 1.20977 0.92137 0.93073 0.99008 1.77619 1.01187 1.04366 1.31480 0.90169 0.89082 0.88908 0.80047 0.85480 0.86173 0.83271 0.90394 0.87549 0.85034 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 11.38 59.85 0.68 1.27 16 2 N -0.33 -3.99 3.95 -67.57 -0.27 -4.25 16 3 C 0.06 0.75 11.51 -16.56 -0.19 0.56 16 4 C -0.19 -3.01 6.32 -105.22 -0.67 -3.67 16 5 C -0.06 -0.97 9.49 -38.74 -0.37 -1.33 16 6 C -0.05 -0.86 5.86 -104.98 -0.62 -1.47 16 7 C -0.07 -1.66 5.88 -104.83 -0.62 -2.28 16 8 C -0.03 -0.68 10.57 -16.96 -0.18 -0.85 16 9 N -0.48 -12.24 10.32 -12.27 -0.13 -12.36 16 10 C 0.05 1.23 9.89 -16.72 -0.17 1.06 16 11 C 0.06 1.66 5.58 -106.71 -0.60 1.07 16 12 C -0.45 -11.52 9.08 -37.73 -0.34 -11.86 16 13 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 14 C 0.07 1.81 5.15 -17.34 -0.09 1.72 16 15 N -0.79 -19.82 10.96 55.55 0.61 -19.21 16 16 Si 0.91 17.93 29.59 -169.99 -5.03 12.90 16 17 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 18 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 19 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 20 C -0.18 -4.40 9.28 -38.23 -0.35 -4.75 16 21 C -0.06 -0.98 9.28 -39.68 -0.37 -1.35 16 22 C -0.12 -1.87 10.06 -39.46 -0.40 -2.27 16 23 C 0.10 1.69 7.49 -83.01 -0.62 1.07 16 24 N -0.32 -5.03 12.54 33.28 0.42 -4.61 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.09 0.31 8.13 -51.93 -0.42 -0.11 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.13 1.95 6.11 -52.49 -0.32 1.63 16 30 H 0.12 2.41 6.13 -52.49 -0.32 2.09 16 31 H 0.15 4.05 6.15 -52.48 -0.32 3.72 16 32 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 33 H 0.11 2.30 6.21 -52.49 -0.33 1.97 16 34 H 0.13 2.14 6.13 -52.49 -0.32 1.82 16 35 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 302.99 15.07 4.57 4.57 Total: -1.00 -31.28 302.99 -8.00 -39.27 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -3.28 Total: 6.79 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -4.89 Total: -23.09 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.63 Total: -40.44 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.28 -8.00 -39.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241609792.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.315 kcal (2) G-P(sol) polarization free energy of solvation -31.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds