Wall clock time and date at job start Tue Mar 31 2020 01:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.33991 * 125.02037 * 2 1 4 4 C 1.38362 * 107.86821 * 179.97438 * 3 2 1 5 5 C 1.40923 * 134.66739 * 179.97438 * 4 3 2 6 6 C 1.37753 * 119.35274 * 180.02562 * 5 4 3 7 7 C 1.48346 * 119.34980 * 180.28498 * 6 5 4 8 8 C 1.39747 * 120.41599 * 359.45417 * 7 6 5 9 9 N 1.31907 * 121.14519 * 179.74580 * 8 7 6 10 10 C 1.31523 * 122.12150 * 0.54358 * 9 8 7 11 11 C 1.40781 * 120.67612 * 359.72027 * 10 9 8 12 12 C 1.41436 * 120.60594 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00157 * 155.57138 * 12 11 10 14 14 C 1.39928 * 120.00165 * 335.58279 * 12 11 10 15 15 N 1.30832 * 119.99874 * 342.34039 * 14 12 11 16 16 Si 1.86802 * 120.00412 * 162.34552 * 14 12 11 17 17 H 1.48497 * 109.47062 * 94.67184 * 16 14 12 18 18 H 1.48491 * 109.47164 * 214.67082 * 16 14 12 19 19 H 1.48503 * 109.46894 * 334.67495 * 16 14 12 20 20 C 1.39171 * 120.41133 * 179.72763 * 7 6 5 21 21 C 1.40716 * 121.29645 * 0.02562 * 6 5 4 22 22 C 1.35349 * 121.70181 * 0.02768 * 21 6 5 23 23 C 1.41264 * 119.89970 * 359.96710 * 22 21 6 24 24 N 1.32055 * 134.42602 * 180.02562 * 23 22 21 25 25 H 1.09005 * 109.46907 * 270.00430 * 1 2 3 26 26 H 1.09005 * 109.46433 * 29.99927 * 1 2 3 27 27 H 1.08992 * 109.47048 * 150.00262 * 1 2 3 28 28 H 1.08001 * 126.05790 * 359.97438 * 3 2 1 29 29 H 1.07993 * 120.32706 * 359.97438 * 5 4 3 30 30 H 1.08000 * 119.42907 * 359.97438 * 8 7 6 31 31 H 1.08003 * 119.66368 * 179.69998 * 10 9 8 32 32 H 0.96996 * 120.00725 * 180.02562 * 15 14 12 33 33 H 1.08000 * 120.95637 * 359.97438 * 20 7 6 34 34 H 1.07997 * 119.15292 * 179.97438 * 21 6 5 35 35 H 1.08000 * 120.04632 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2340 1.0973 0.0000 4 6 3.5561 0.6893 0.0006 5 6 4.7982 1.3548 0.0004 6 6 5.9605 0.6153 0.0007 7 6 7.2680 1.3159 0.0069 8 6 7.3225 2.7123 0.0010 9 7 8.4771 3.3501 0.0115 10 6 9.6278 2.7131 0.0173 11 6 9.6699 1.3060 0.0184 12 6 10.9081 0.6225 0.0240 13 1 10.9678 -0.3837 0.4117 14 6 12.0560 1.2502 -0.4724 15 7 11.9451 2.3010 -1.2439 16 14 13.7467 0.5877 -0.0339 17 1 14.2100 -0.3332 -1.1028 18 1 14.7024 1.7167 0.0953 19 1 13.6714 -0.1472 1.2543 20 6 8.4558 0.5907 0.0130 21 6 5.9317 -0.7916 0.0005 22 6 4.7659 -1.4791 -0.0004 23 6 3.5372 -0.7821 -0.0005 24 7 2.2679 -1.1462 -0.0009 25 1 -0.3633 0.0001 1.0277 26 1 -0.3632 0.8901 -0.5139 27 1 -0.3633 -0.8899 -0.5138 28 1 1.8838 2.1190 -0.0004 29 1 4.8387 2.4340 -0.0007 30 1 6.4033 3.2792 -0.0085 31 1 10.5500 3.2754 0.0209 32 1 12.7407 2.7359 -1.5884 33 1 8.4474 -0.4892 0.0137 34 1 6.8639 -1.3368 0.0003 35 1 4.7750 -2.5591 -0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241609792.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:19 Heat of formation + Delta-G solvation = 101.603591 kcal Electronic energy + Delta-G solvation = -19700.982123 eV Core-core repulsion = 16664.226741 eV Total energy + Delta-G solvation = -3036.755382 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.18391 -40.32164 -38.20930 -35.85456 -34.22519 -32.92345 -32.50077 -31.71145 -29.17055 -27.87243 -27.42933 -24.27211 -24.16691 -22.60427 -21.96068 -21.39549 -19.28815 -18.04460 -17.81301 -17.55410 -16.82622 -16.50989 -16.35185 -16.10786 -14.95243 -14.86802 -14.69263 -14.44095 -14.14273 -13.96147 -13.86900 -13.42179 -13.29701 -13.00906 -12.94048 -12.62596 -12.48287 -12.41989 -12.18798 -11.79776 -11.30799 -11.26131 -11.17945 -10.27331 -9.87368 -9.63878 -9.35259 -8.72638 -8.19873 -6.43167 -0.39562 0.37422 0.93655 1.28761 1.41267 1.50583 1.52784 1.56390 1.61069 2.20801 2.70422 3.00391 3.20103 3.72425 3.79593 3.96643 4.11100 4.14256 4.31507 4.35520 4.43009 4.47334 4.52831 4.64119 4.69822 4.79011 4.87472 5.00833 5.18572 5.24468 5.29776 5.48974 5.53333 5.59108 5.87683 5.90444 5.94412 5.99199 6.20864 6.39112 6.63832 6.80221 6.80940 7.80037 8.27751 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.041636 B = 0.003441 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.338717 B = 8136.175977 C = 8723.030293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.322 5.322 3 C 0.102 3.898 4 C -0.231 4.231 5 C -0.028 4.028 6 C -0.091 4.091 7 C -0.059 4.059 8 C -0.042 4.042 9 N -0.491 5.491 10 C 0.009 3.991 11 C 0.041 3.959 12 C -0.484 4.484 13 H 0.085 0.915 14 C 0.035 3.965 15 N -0.822 5.822 16 Si 0.989 3.011 17 H -0.261 1.261 18 H -0.265 1.265 19 H -0.257 1.257 20 C -0.202 4.202 21 C -0.066 4.066 22 C -0.121 4.121 23 C 0.082 3.918 24 N -0.352 5.352 25 H 0.099 0.901 26 H 0.130 0.870 27 H 0.095 0.905 28 H 0.236 0.764 29 H 0.143 0.857 30 H 0.153 0.847 31 H 0.133 0.867 32 H 0.293 0.707 33 H 0.119 0.881 34 H 0.129 0.871 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.207 -2.605 1.763 18.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.095 5.095 3 C -0.056 4.056 4 C -0.241 4.241 5 C -0.048 4.048 6 C -0.093 4.093 7 C -0.061 4.061 8 C -0.198 4.198 9 N -0.198 5.198 10 C -0.153 4.153 11 C 0.036 3.964 12 C -0.513 4.513 13 H 0.103 0.897 14 C -0.181 4.181 15 N -0.447 5.447 16 Si 0.808 3.192 17 H -0.186 1.186 18 H -0.190 1.190 19 H -0.180 1.180 20 C -0.228 4.228 21 C -0.088 4.088 22 C -0.142 4.142 23 C -0.070 4.070 24 N -0.180 5.180 25 H 0.118 0.882 26 H 0.148 0.852 27 H 0.114 0.886 28 H 0.253 0.747 29 H 0.161 0.839 30 H 0.170 0.830 31 H 0.151 0.849 32 H 0.104 0.896 33 H 0.137 0.863 34 H 0.147 0.853 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -19.172 -2.577 1.616 19.412 hybrid contribution 1.609 -0.500 -0.044 1.685 sum -17.563 -3.077 1.572 17.900 Atomic orbital electron populations 1.22545 0.70579 1.07039 1.05782 1.48943 1.09179 1.03344 1.48063 1.23380 0.88942 0.94975 0.98278 1.19815 0.94189 0.93222 1.16869 1.20698 0.88909 0.99745 0.95419 1.18449 0.91638 0.93138 1.06072 1.19552 0.92466 0.94366 0.99695 1.22379 0.95364 0.90952 1.11103 1.67066 0.99249 1.42474 1.11046 1.22825 0.94235 0.92516 1.05714 1.18772 0.94056 0.93600 0.89934 1.19810 0.92606 1.01945 1.36938 0.89690 1.26871 1.05499 0.94180 0.91522 1.69832 1.33934 1.18498 1.22430 0.85094 0.75221 0.78921 0.79916 1.18586 1.18954 1.18013 1.21669 0.91625 0.98920 1.10555 1.20828 0.98175 0.93409 0.96376 1.19847 0.88131 0.99788 1.06393 1.21186 0.92596 0.93973 0.99217 1.77584 1.01060 1.06428 1.32975 0.88231 0.85167 0.88631 0.74746 0.83936 0.83029 0.84934 0.89611 0.86346 0.85282 0.84315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 11.38 127.77 1.45 2.05 16 2 N -0.32 -6.33 3.95 -367.70 -1.45 -7.78 16 3 C 0.10 1.91 11.51 84.39 0.97 2.88 16 4 C -0.23 -6.62 6.32 -20.25 -0.13 -6.75 16 5 C -0.03 -0.88 9.49 22.81 0.22 -0.67 16 6 C -0.09 -3.44 5.86 -20.10 -0.12 -3.56 16 7 C -0.06 -2.67 5.88 -20.00 -0.12 -2.79 16 8 C -0.04 -1.98 10.57 85.05 0.90 -1.08 16 9 N -0.49 -25.99 10.32 -192.74 -1.99 -27.98 16 10 C 0.01 0.52 9.89 85.36 0.84 1.37 16 11 C 0.04 2.24 5.58 -21.22 -0.12 2.12 16 12 C -0.48 -25.73 9.08 23.47 0.21 -25.51 16 13 H 0.09 4.28 7.91 -2.91 -0.02 4.26 16 14 C 0.04 1.75 5.15 85.25 0.44 2.19 16 15 N -0.82 -42.87 10.96 21.82 0.24 -42.63 16 16 Si 0.99 37.33 29.59 68.60 2.03 39.36 16 17 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 18 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 19 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 20 C -0.20 -10.04 9.28 23.15 0.21 -9.82 16 21 C -0.07 -2.31 9.28 22.21 0.21 -2.11 16 22 C -0.12 -3.88 10.06 22.35 0.22 -3.66 16 23 C 0.08 2.63 7.49 42.19 0.32 2.95 16 24 N -0.35 -10.29 12.54 -48.62 -0.61 -10.90 16 25 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 26 H 0.13 0.04 8.13 -2.38 -0.02 0.02 16 27 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.24 1.76 8.06 -2.91 -0.02 1.74 16 29 H 0.14 3.95 6.11 -2.91 -0.02 3.93 16 30 H 0.15 5.88 6.13 -2.91 -0.02 5.86 16 31 H 0.13 7.70 6.15 -2.91 -0.02 7.68 16 32 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 33 H 0.12 5.39 6.21 -2.91 -0.02 5.37 16 34 H 0.13 4.41 6.13 -2.91 -0.02 4.39 16 35 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -72.38 302.99 4.87 -67.51 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 1.13 Total: 24.81 kcal Atomic # 6 Polarization: -47.91 SS G_CDS: 5.52 Total: -42.39 kcal Atomic # 7 Polarization: -85.48 SS G_CDS: -3.81 Total: -89.29 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.36 kcal Total: -72.38 4.87 -67.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241609792.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.116 kcal (2) G-P(sol) polarization free energy of solvation -72.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds