Wall clock time and date at job start Tue Mar 31 2020 00:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38851 * 118.90187 * 2 1 4 4 C 1.36697 * 120.43983 * 180.02562 * 3 2 1 5 5 C 1.41273 * 118.37881 * 359.97438 * 4 3 2 6 6 C 1.40669 * 120.99208 * 179.97438 * 5 4 3 7 7 H 1.07999 * 120.00182 * 149.30956 * 6 5 4 8 8 C 1.39959 * 120.00133 * 329.31228 * 6 5 4 9 9 N 1.30844 * 119.99642 * 348.76374 * 8 6 5 10 10 Si 1.86802 * 120.00083 * 168.75691 * 8 6 5 11 11 H 1.48501 * 109.47088 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46849 * 120.00567 * 10 8 6 13 13 H 1.48502 * 109.47085 * 240.00284 * 10 8 6 14 14 C 1.46547 * 118.02354 * 0.02562 * 5 4 3 15 15 C 1.47113 * 120.32994 * 179.97438 * 14 5 4 16 16 C 1.38880 * 120.73266 * 311.54614 * 15 14 5 17 17 C 1.38796 * 121.34234 * 180.02562 * 16 15 14 18 18 C 1.35971 * 122.58793 * 359.95176 * 17 16 15 19 19 C 1.40900 * 120.57155 * 0.02854 * 18 17 16 20 20 C 1.38426 * 134.86462 * 180.02562 * 19 18 17 21 21 N 1.34047 * 107.82486 * 180.02562 * 20 19 18 22 22 H 0.97002 * 125.03548 * 180.02562 * 21 20 19 23 23 N 1.39980 * 109.92437 * 359.97438 * 21 20 19 24 24 C 1.31493 * 109.02272 * 0.02562 * 23 21 20 25 25 N 1.31480 * 118.91103 * 180.30017 * 2 1 3 26 26 H 1.08998 * 109.47313 * 90.00082 * 1 2 3 27 27 H 1.09006 * 109.46922 * 209.99868 * 1 2 3 28 28 H 1.09000 * 109.47644 * 329.99699 * 1 2 3 29 29 H 1.08000 * 119.78310 * 359.97438 * 3 2 1 30 30 H 1.08000 * 120.81178 * 179.97438 * 4 3 2 31 31 H 0.96998 * 119.99652 * 180.02562 * 9 8 6 32 32 H 1.07997 * 119.32463 * 0.02995 * 16 15 14 33 33 H 1.07999 * 118.70604 * 179.97438 * 17 16 15 34 34 H 1.07997 * 119.71443 * 180.31050 * 18 17 16 35 35 H 1.07999 * 126.08711 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1781 1.2156 0.0000 4 6 3.5446 1.2523 -0.0005 5 6 4.2492 0.0278 -0.0005 6 6 5.6556 0.0014 -0.0016 7 1 6.1808 -0.8127 0.4758 8 6 6.3744 1.0301 -0.6212 9 7 5.7545 1.8939 -1.3837 10 14 8.2187 1.1699 -0.3593 11 1 8.6753 0.0789 0.5386 12 1 8.9140 1.0583 -1.6667 13 1 8.5328 2.4836 0.2578 14 6 3.4713 -1.2142 -0.0005 15 6 4.1531 -2.5178 -0.0011 16 6 5.1832 -2.7796 -0.8949 17 6 5.8348 -4.0050 -0.9069 18 6 5.5117 -5.0145 -0.0552 19 6 4.4810 -4.8512 0.8915 20 6 3.9201 -5.6511 1.8722 21 7 2.9509 -4.9459 2.4723 22 1 2.3951 -5.2692 3.1986 23 7 2.8605 -3.6733 1.8963 24 6 3.7594 -3.5699 0.9421 25 7 2.1427 -1.1509 -0.0060 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.6168 2.1382 -0.0004 30 1 4.0727 2.1943 -0.0009 31 1 6.2527 2.6067 -1.8135 32 1 5.4835 -2.0139 -1.5949 33 1 6.6299 -4.1629 -1.6205 34 1 6.0530 -5.9479 -0.1016 35 1 4.2116 -6.6632 2.1113 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241622728.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:00 Heat of formation + Delta-G solvation = 112.452002 kcal Electronic energy + Delta-G solvation = -20684.940369 eV Core-core repulsion = 17648.655410 eV Total energy + Delta-G solvation = -3036.284959 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.59076 -38.25736 -36.24896 -34.24174 -32.28064 -30.94525 -30.48041 -29.74097 -28.15358 -27.45067 -24.48741 -23.39979 -21.70950 -21.27827 -20.39753 -19.19105 -17.57895 -17.30636 -16.25932 -15.51997 -15.40141 -14.48900 -14.26840 -14.12565 -13.73981 -13.58547 -12.98692 -12.73613 -12.48281 -11.97591 -11.75241 -11.59821 -11.46516 -11.19086 -11.10662 -10.95338 -10.93428 -10.79994 -10.52871 -9.96648 -9.67697 -9.62595 -9.39572 -8.37892 -8.06600 -7.94326 -7.45541 -6.95286 -6.62763 -4.44576 1.10231 2.41391 2.59025 2.85055 3.01602 3.08153 3.09095 3.12591 3.27254 3.83577 4.47116 4.59100 4.82438 4.96005 5.44889 5.49466 5.68359 5.78558 5.90345 5.97009 6.14225 6.24163 6.38638 6.48656 6.49574 6.60278 6.66374 6.84116 6.95180 7.02440 7.08451 7.19664 7.27869 7.40503 7.49417 7.57251 7.75268 7.91282 7.96323 8.18918 8.42879 8.61592 8.72990 9.69819 10.02416 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.007931 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.860822 B = 3529.732313 C = 5220.896674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.014 4.014 3 C -0.137 4.137 4 C -0.134 4.134 5 C 0.091 3.909 6 C -0.433 4.433 7 H 0.089 0.911 8 C 0.073 3.927 9 N -0.789 5.789 10 Si 0.911 3.089 11 H -0.256 1.256 12 H -0.271 1.271 13 H -0.271 1.271 14 C 0.018 3.982 15 C 0.056 3.944 16 C -0.092 4.092 17 C -0.127 4.127 18 C -0.087 4.087 19 C -0.198 4.198 20 C 0.052 3.948 21 N -0.444 5.444 22 H 0.436 0.564 23 N -0.277 5.277 24 C 0.119 3.881 25 N -0.434 5.434 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.096 0.904 30 H 0.124 0.876 31 H 0.284 0.716 32 H 0.135 0.865 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.704 -9.028 3.049 9.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.155 4.155 3 C -0.158 4.158 4 C -0.160 4.160 5 C 0.086 3.914 6 C -0.462 4.462 7 H 0.107 0.893 8 C -0.146 4.146 9 N -0.413 5.413 10 Si 0.735 3.265 11 H -0.180 1.180 12 H -0.196 1.196 13 H -0.197 1.197 14 C -0.122 4.122 15 C 0.053 3.947 16 C -0.115 4.115 17 C -0.146 4.146 18 C -0.108 4.108 19 C -0.209 4.209 20 C -0.103 4.103 21 N -0.145 5.145 22 H 0.279 0.721 23 N -0.104 5.104 24 C -0.039 4.039 25 N -0.142 5.142 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.142 0.858 31 H 0.095 0.905 32 H 0.153 0.847 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -0.719 -8.937 3.529 9.635 hybrid contribution 1.659 0.390 0.035 1.705 sum 0.940 -8.546 3.564 9.307 Atomic orbital electron populations 1.20282 0.91841 1.00669 1.00266 1.20130 0.94809 0.88536 1.11999 1.21156 0.95485 0.96982 1.02139 1.21269 0.92478 0.98555 1.03671 1.19374 0.93711 0.90255 0.88013 1.19534 0.91048 1.06357 1.29296 0.89348 1.25990 1.01582 0.94020 0.93003 1.69797 1.38686 1.12133 1.20693 0.86190 0.81433 0.79512 0.79403 1.17982 1.19632 1.19653 1.20425 0.88207 0.90504 1.13022 1.18356 0.94994 0.88999 0.92394 1.21081 0.95532 0.96620 0.98261 1.20326 1.00738 0.93571 0.99975 1.19931 0.96564 0.98710 0.95588 1.19580 1.03771 0.94883 1.02622 1.22482 0.93277 0.98116 0.96442 1.46424 1.27492 1.11389 1.29160 0.72084 1.77634 1.23183 0.95484 1.14057 1.22140 0.93078 0.94165 0.94471 1.66986 1.09505 1.28671 1.09008 0.93388 0.92712 0.93098 0.88608 0.85841 0.90521 0.84721 0.86776 0.87065 0.80456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.42 10.13 36.01 0.36 -1.05 16 2 C -0.01 -0.33 6.77 -82.52 -0.56 -0.89 16 3 C -0.14 -3.28 9.58 -39.91 -0.38 -3.67 16 4 C -0.13 -3.46 8.71 -38.99 -0.34 -3.80 16 5 C 0.09 2.42 5.66 -104.48 -0.59 1.83 16 6 C -0.43 -10.95 7.08 -38.02 -0.27 -11.21 16 7 H 0.09 2.21 6.96 -52.49 -0.37 1.84 16 8 C 0.07 1.73 5.26 -17.33 -0.09 1.64 16 9 N -0.79 -19.32 11.06 55.55 0.61 -18.71 16 10 Si 0.91 17.86 29.57 -169.99 -5.03 12.83 16 11 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 12 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 13 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 14 C 0.02 0.47 6.55 -80.41 -0.53 -0.06 16 15 C 0.06 1.33 5.38 -102.65 -0.55 0.78 16 16 C -0.09 -1.93 8.13 -39.14 -0.32 -2.24 16 17 C -0.13 -2.18 9.83 -40.19 -0.39 -2.58 16 18 C -0.09 -1.40 10.03 -39.39 -0.40 -1.80 16 19 C -0.20 -3.50 6.34 -105.21 -0.67 -4.16 16 20 C 0.05 0.70 12.09 -16.52 -0.20 0.50 16 21 N -0.44 -6.51 7.19 30.89 0.22 -6.29 16 22 H 0.44 4.43 8.96 -182.69 -1.64 2.79 16 23 N -0.28 -5.83 12.67 34.35 0.44 -5.39 16 24 C 0.12 2.60 7.46 -80.99 -0.60 2.00 16 25 N -0.43 -11.31 10.17 -4.39 -0.04 -11.36 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.05 0.86 8.06 -51.93 -0.42 0.44 16 29 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 30 H 0.12 3.19 6.52 -52.49 -0.34 2.85 16 31 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 32 H 0.13 2.91 7.23 -52.49 -0.38 2.53 16 33 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 34 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.18 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 305.52 15.07 4.60 4.60 Total: -1.00 -31.54 305.52 -9.54 -41.08 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -4.81 Total: 7.95 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -5.53 Total: -24.72 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 1.23 Total: -41.75 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.54 -9.54 -41.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241622728.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.532 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds