Wall clock time and date at job start Tue Mar 31 2020 00:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38851 * 118.90187 * 2 1 4 4 C 1.36697 * 120.43983 * 180.02562 * 3 2 1 5 5 C 1.41273 * 118.37881 * 359.97438 * 4 3 2 6 6 C 1.40669 * 120.99208 * 179.97438 * 5 4 3 7 7 H 1.07999 * 120.00182 * 149.30956 * 6 5 4 8 8 C 1.39959 * 120.00133 * 329.31228 * 6 5 4 9 9 N 1.30844 * 119.99642 * 348.76374 * 8 6 5 10 10 Si 1.86802 * 120.00083 * 168.75691 * 8 6 5 11 11 H 1.48501 * 109.47088 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46849 * 120.00567 * 10 8 6 13 13 H 1.48502 * 109.47085 * 240.00284 * 10 8 6 14 14 C 1.46547 * 118.02354 * 0.02562 * 5 4 3 15 15 C 1.47113 * 120.32994 * 179.97438 * 14 5 4 16 16 C 1.38880 * 120.73266 * 311.54614 * 15 14 5 17 17 C 1.38796 * 121.34234 * 180.02562 * 16 15 14 18 18 C 1.35971 * 122.58793 * 359.95176 * 17 16 15 19 19 C 1.40900 * 120.57155 * 0.02854 * 18 17 16 20 20 C 1.38426 * 134.86462 * 180.02562 * 19 18 17 21 21 N 1.34047 * 107.82486 * 180.02562 * 20 19 18 22 22 H 0.97002 * 125.03548 * 180.02562 * 21 20 19 23 23 N 1.39980 * 109.92437 * 359.97438 * 21 20 19 24 24 C 1.31493 * 109.02272 * 0.02562 * 23 21 20 25 25 N 1.31480 * 118.91103 * 180.30017 * 2 1 3 26 26 H 1.08998 * 109.47313 * 90.00082 * 1 2 3 27 27 H 1.09006 * 109.46922 * 209.99868 * 1 2 3 28 28 H 1.09000 * 109.47644 * 329.99699 * 1 2 3 29 29 H 1.08000 * 119.78310 * 359.97438 * 3 2 1 30 30 H 1.08000 * 120.81178 * 179.97438 * 4 3 2 31 31 H 0.96998 * 119.99652 * 180.02562 * 9 8 6 32 32 H 1.07997 * 119.32463 * 0.02995 * 16 15 14 33 33 H 1.07999 * 118.70604 * 179.97438 * 17 16 15 34 34 H 1.07997 * 119.71443 * 180.31050 * 18 17 16 35 35 H 1.07999 * 126.08711 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1781 1.2156 0.0000 4 6 3.5446 1.2523 -0.0005 5 6 4.2492 0.0278 -0.0005 6 6 5.6556 0.0014 -0.0016 7 1 6.1808 -0.8127 0.4758 8 6 6.3744 1.0301 -0.6212 9 7 5.7545 1.8939 -1.3837 10 14 8.2187 1.1699 -0.3593 11 1 8.6753 0.0789 0.5386 12 1 8.9140 1.0583 -1.6667 13 1 8.5328 2.4836 0.2578 14 6 3.4713 -1.2142 -0.0005 15 6 4.1531 -2.5178 -0.0011 16 6 5.1832 -2.7796 -0.8949 17 6 5.8348 -4.0050 -0.9069 18 6 5.5117 -5.0145 -0.0552 19 6 4.4810 -4.8512 0.8915 20 6 3.9201 -5.6511 1.8722 21 7 2.9509 -4.9459 2.4723 22 1 2.3951 -5.2692 3.1986 23 7 2.8605 -3.6733 1.8963 24 6 3.7594 -3.5699 0.9421 25 7 2.1427 -1.1509 -0.0060 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.6168 2.1382 -0.0004 30 1 4.0727 2.1943 -0.0009 31 1 6.2527 2.6067 -1.8135 32 1 5.4835 -2.0139 -1.5949 33 1 6.6299 -4.1629 -1.6205 34 1 6.0530 -5.9479 -0.1016 35 1 4.2116 -6.6632 2.1113 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241622728.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:00 Heat of formation + Delta-G solvation = 92.331742 kcal Electronic energy + Delta-G solvation = -20685.812849 eV Core-core repulsion = 17648.655410 eV Total energy + Delta-G solvation = -3037.157439 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.90572 -40.08180 -37.66547 -36.06707 -33.85282 -32.72462 -32.01878 -31.20713 -29.68516 -29.13087 -26.13922 -24.94815 -23.40222 -22.76133 -22.10991 -20.61908 -19.18087 -18.85620 -17.65263 -17.27971 -16.90426 -16.19754 -15.76190 -15.61611 -15.31122 -15.12217 -14.61305 -14.21987 -14.03749 -13.67669 -13.44348 -13.19309 -13.07025 -12.78561 -12.65291 -12.61751 -12.41569 -12.29311 -12.15070 -11.67606 -11.20019 -11.07074 -11.03484 -10.18980 -9.84890 -9.55162 -9.23496 -8.70627 -8.16295 -6.33755 -0.23824 0.72316 1.05932 1.15964 1.38635 1.50964 1.54278 1.69997 2.02405 2.19088 2.73182 3.04623 3.53069 3.64586 3.74543 4.04022 4.39090 4.42896 4.47525 4.54115 4.62439 4.63445 4.78245 4.92024 4.94770 4.97484 5.03601 5.15423 5.24057 5.35850 5.44444 5.65098 5.74885 5.82677 5.86691 6.07003 6.10736 6.21852 6.46866 6.53210 6.74292 6.82280 6.87706 7.81347 8.26420 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.007931 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.860822 B = 3529.732313 C = 5220.896674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.033 4.033 3 C -0.145 4.145 4 C -0.158 4.158 5 C 0.057 3.943 6 C -0.452 4.452 7 H 0.080 0.920 8 C 0.036 3.964 9 N -0.820 5.820 10 Si 0.982 3.018 11 H -0.257 1.257 12 H -0.259 1.259 13 H -0.264 1.264 14 C 0.013 3.987 15 C -0.013 4.013 16 C -0.074 4.074 17 C -0.165 4.165 18 C -0.042 4.042 19 C -0.240 4.240 20 C 0.113 3.887 21 N -0.426 5.426 22 H 0.456 0.544 23 N -0.345 5.345 24 C 0.093 3.907 25 N -0.459 5.459 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.123 0.877 30 H 0.114 0.886 31 H 0.292 0.708 32 H 0.110 0.890 33 H 0.145 0.855 34 H 0.165 0.835 35 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.917 -12.423 3.928 13.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.172 4.172 3 C -0.165 4.165 4 C -0.184 4.184 5 C 0.052 3.948 6 C -0.481 4.481 7 H 0.098 0.902 8 C -0.179 4.179 9 N -0.445 5.445 10 Si 0.802 3.198 11 H -0.180 1.180 12 H -0.184 1.184 13 H -0.189 1.189 14 C -0.128 4.128 15 C -0.017 4.017 16 C -0.097 4.097 17 C -0.184 4.184 18 C -0.062 4.062 19 C -0.250 4.250 20 C -0.045 4.045 21 N -0.128 5.128 22 H 0.303 0.697 23 N -0.173 5.173 24 C -0.062 4.062 25 N -0.168 5.168 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.141 0.859 30 H 0.132 0.868 31 H 0.103 0.897 32 H 0.128 0.872 33 H 0.163 0.837 34 H 0.183 0.817 35 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 0.438 -12.314 4.421 13.091 hybrid contribution 1.212 1.144 -0.152 1.674 sum 1.650 -11.170 4.269 12.071 Atomic orbital electron populations 1.20304 0.88592 1.01897 1.01480 1.20937 0.97175 0.88261 1.10876 1.21430 0.95072 0.98265 1.01771 1.21302 0.93490 0.98103 1.05473 1.19776 0.94797 0.90963 0.89253 1.19543 0.90872 1.07180 1.30489 0.90229 1.26805 1.06053 0.93071 0.92015 1.69843 1.40671 1.12757 1.21271 0.85138 0.75513 0.79478 0.79634 1.18016 1.18363 1.18886 1.21012 0.88450 0.91964 1.11337 1.18442 0.97718 0.89442 0.96061 1.21109 0.94378 0.97637 0.96616 1.20553 1.02522 0.92702 1.02611 1.20508 0.94059 0.99538 0.92086 1.20127 1.05382 0.94170 1.05361 1.23548 0.89389 0.99282 0.92282 1.46487 1.27553 1.09907 1.28888 0.69680 1.77539 1.25078 0.98813 1.15839 1.22158 0.94177 0.95413 0.94473 1.67115 1.09889 1.29523 1.10230 0.92043 0.92871 0.90406 0.85870 0.86846 0.89691 0.87230 0.83720 0.81738 0.73488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.55 10.13 71.24 0.72 -1.83 16 2 C -0.03 -1.64 6.77 42.76 0.29 -1.35 16 3 C -0.15 -7.29 9.58 22.06 0.21 -7.08 16 4 C -0.16 -8.73 8.71 22.66 0.20 -8.53 16 5 C 0.06 3.24 5.66 -19.77 -0.11 3.13 16 6 C -0.45 -24.38 7.08 23.28 0.16 -24.22 16 7 H 0.08 4.28 6.96 -2.91 -0.02 4.26 16 8 C 0.04 1.80 5.26 85.26 0.45 2.25 16 9 N -0.82 -42.15 11.06 21.83 0.24 -41.91 16 10 Si 0.98 37.48 29.57 68.60 2.03 39.51 16 11 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 12 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 13 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 14 C 0.01 0.70 6.55 43.46 0.28 0.99 16 15 C -0.01 -0.63 5.38 -18.59 -0.10 -0.73 16 16 C -0.07 -3.26 8.13 22.56 0.18 -3.08 16 17 C -0.16 -5.46 9.83 21.88 0.21 -5.24 16 18 C -0.04 -1.17 10.03 22.39 0.22 -0.95 16 19 C -0.24 -7.71 6.34 -20.24 -0.13 -7.84 16 20 C 0.11 2.41 12.09 84.40 1.02 3.43 16 21 N -0.43 -11.21 7.19 -56.20 -0.40 -11.62 16 22 H 0.46 7.67 8.96 -213.39 -1.91 5.76 16 23 N -0.34 -14.57 12.67 -45.24 -0.57 -15.15 16 24 C 0.09 4.13 7.46 43.74 0.33 4.46 16 25 N -0.46 -25.37 10.17 -167.79 -1.71 -27.07 16 26 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 28 H 0.08 2.57 8.06 -2.39 -0.02 2.55 16 29 H 0.12 5.27 8.06 -2.91 -0.02 5.25 16 30 H 0.11 6.30 6.52 -2.91 -0.02 6.28 16 31 H 0.29 13.44 8.30 -92.71 -0.77 12.67 16 32 H 0.11 5.16 7.23 -2.91 -0.02 5.14 16 33 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 34 H 0.17 2.85 8.06 -2.91 -0.02 2.82 16 35 H 0.25 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -77.75 305.52 2.76 -74.99 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: -0.77 Total: 27.83 kcal Atomic # 6 Polarization: -50.53 SS G_CDS: 3.95 Total: -46.59 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -2.44 Total: -95.75 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Total: -77.75 2.76 -74.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241622728.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.322 kcal (2) G-P(sol) polarization free energy of solvation -77.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds