Wall clock time and date at job start Tue Mar 31 2020 01:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36703 * 125.56517 * 2 1 4 4 C 1.34524 * 109.59210 * 179.97438 * 3 2 1 5 5 C 1.41625 * 107.83387 * 359.97438 * 4 3 2 6 6 C 1.37874 * 125.56375 * 179.97438 * 2 1 3 7 7 C 1.39004 * 133.33253 * 0.04137 * 6 2 1 8 8 C 1.38162 * 120.28301 * 179.97438 * 7 6 2 9 9 C 1.38204 * 120.81498 * 359.78186 * 8 7 6 10 10 C 1.39446 * 120.23749 * 0.47519 * 9 8 7 11 11 C 1.47329 * 120.32220 * 179.78758 * 10 9 8 12 12 N 1.33160 * 120.55766 * 129.70558 * 11 10 9 13 13 C 1.31835 * 120.02582 * 180.02562 * 12 11 10 14 14 C 1.39089 * 121.23455 * 359.97438 * 13 12 11 15 15 N 1.31491 * 121.16702 * 0.02562 * 14 13 12 16 16 C 1.34117 * 119.86547 * 359.97438 * 15 14 13 17 17 C 1.40624 * 120.58902 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99889 * 171.79205 * 17 16 15 19 19 C 1.40124 * 120.00117 * 351.79108 * 17 16 15 20 20 N 1.30710 * 119.99842 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00317 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47090 * 89.99397 * 21 19 17 23 23 H 1.48496 * 109.47094 * 209.99783 * 21 19 17 24 24 H 1.48504 * 109.46574 * 329.99523 * 21 19 17 25 25 H 1.08993 * 109.47062 * 270.04710 * 1 2 3 26 26 H 1.08999 * 109.47007 * 30.04293 * 1 2 3 27 27 H 1.09001 * 109.47499 * 150.03905 * 1 2 3 28 28 H 1.07995 * 125.20615 * 359.95908 * 3 2 1 29 29 H 1.07999 * 126.08066 * 180.02562 * 4 3 2 30 30 H 1.08001 * 119.85480 * 359.97438 * 7 6 2 31 31 H 1.08001 * 119.59381 * 180.02562 * 8 7 6 32 32 H 1.08005 * 119.88517 * 180.25924 * 9 8 7 33 33 H 1.07997 * 119.37656 * 180.02562 * 13 12 11 34 34 H 1.08007 * 119.41193 * 180.28272 * 14 13 12 35 35 H 0.96997 * 120.00030 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2601 1.1120 0.0000 4 6 3.5534 0.7418 0.0006 5 6 3.5994 -0.6737 0.0016 6 6 2.2669 -1.1216 0.0005 7 6 1.9992 -2.4856 0.0004 8 6 3.0358 -3.3990 0.0005 9 6 4.3517 -2.9766 -0.0038 10 6 4.6521 -1.6149 0.0017 11 6 6.0542 -1.1625 0.0018 12 7 6.4724 -0.2537 -0.8770 13 6 7.7296 0.1432 -0.8678 14 6 8.6412 -0.3698 0.0489 15 7 8.2798 -1.2690 0.9376 16 6 7.0119 -1.7050 0.9689 17 6 6.6087 -2.6659 1.9132 18 1 5.5628 -2.9132 2.0192 19 6 7.5641 -3.3026 2.7166 20 7 8.8300 -3.0037 2.5880 21 14 7.0287 -4.5795 3.9706 22 1 7.0272 -5.9234 3.3388 23 1 7.9718 -4.5727 5.1176 24 1 5.6613 -4.2574 4.4521 25 1 -0.3633 0.0008 1.0276 26 1 -0.3633 0.8896 -0.5145 27 1 -0.3634 -0.8903 -0.5132 28 1 1.9045 2.1317 -0.0006 29 1 4.4051 1.4059 0.0011 30 1 0.9765 -2.8328 0.0002 31 1 2.8151 -4.4562 0.0000 32 1 5.1503 -3.7037 -0.0079 33 1 8.0574 0.8812 -1.5850 34 1 9.6630 -0.0203 0.0330 35 1 9.4914 -3.4446 3.1438 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241819256.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:12 Heat of formation + Delta-G solvation = 104.486097 kcal Electronic energy + Delta-G solvation = -20738.805633 eV Core-core repulsion = 17702.175246 eV Total energy + Delta-G solvation = -3036.630387 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.87889 -38.61628 -36.32379 -34.13434 -32.84870 -31.94295 -30.97277 -28.68642 -28.12153 -26.11222 -25.85011 -23.17701 -21.91855 -21.20847 -20.79953 -19.23252 -17.63791 -16.65728 -16.09816 -15.75175 -15.03694 -14.91402 -14.77197 -14.45049 -14.04656 -13.50478 -13.02976 -12.69558 -12.59096 -12.44725 -12.27086 -11.99192 -11.78133 -11.52172 -11.40915 -11.03733 -10.84100 -10.61882 -10.42035 -10.11664 -9.84882 -9.52483 -9.24033 -8.91617 -7.74921 -7.55946 -7.43213 -6.85543 -6.52573 -4.68997 1.57289 2.24816 2.56055 2.97868 2.99296 3.04422 3.19084 3.24209 3.34288 3.79531 4.56064 4.66326 4.86526 5.16514 5.22481 5.35805 5.42497 5.50830 5.70168 5.74975 5.93354 6.02590 6.07367 6.26525 6.31109 6.36445 6.52695 6.64253 6.75236 6.86364 6.95178 7.08458 7.19860 7.28374 7.40533 7.56556 7.71488 7.78055 7.85506 8.04033 8.35037 8.64365 9.28450 9.83874 10.02965 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016682 B = 0.006691 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.069141 B = 4183.534050 C = 5356.962679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.492 5.492 3 C 0.015 3.985 4 C -0.167 4.167 5 C -0.091 4.091 6 C 0.090 3.910 7 C -0.158 4.158 8 C -0.093 4.093 9 C -0.141 4.141 10 C 0.082 3.918 11 C -0.031 4.031 12 N -0.403 5.403 13 C -0.129 4.129 14 C 0.091 3.909 15 N -0.462 5.462 16 C 0.224 3.776 17 C -0.391 4.391 18 H 0.100 0.900 19 C 0.064 3.936 20 N -0.702 5.702 21 Si 0.911 3.089 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.256 1.256 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.159 0.841 29 H 0.138 0.862 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.281 1.354 -1.307 11.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.177 5.177 3 C -0.109 4.109 4 C -0.193 4.193 5 C -0.096 4.096 6 C -0.016 4.016 7 C -0.180 4.180 8 C -0.112 4.112 9 C -0.162 4.162 10 C 0.080 3.920 11 C -0.180 4.180 12 N -0.115 5.115 13 C -0.290 4.290 14 C -0.079 4.079 15 N -0.178 5.178 16 C 0.098 3.902 17 C -0.421 4.421 18 H 0.118 0.882 19 C -0.164 4.164 20 N -0.322 5.322 21 Si 0.734 3.266 22 H -0.189 1.189 23 H -0.198 1.198 24 H -0.179 1.179 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.177 0.823 29 H 0.156 0.844 30 H 0.124 0.876 31 H 0.136 0.864 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.337 1.374 -1.215 11.485 hybrid contribution -0.058 -0.326 0.511 0.609 sum -11.395 1.049 -0.704 11.465 Atomic orbital electron populations 1.21769 0.78026 1.03454 1.02278 1.43710 1.05078 1.04684 1.64219 1.21674 0.90314 0.90790 1.08091 1.20670 0.95479 0.94266 1.08840 1.18220 0.91255 0.93615 1.06512 1.18208 0.89806 0.88215 1.05344 1.19760 0.98563 0.89197 1.10442 1.20602 0.92145 0.98191 1.00295 1.21047 0.96054 0.94939 1.04135 1.17810 0.89580 0.91254 0.93362 1.21206 0.93405 1.03264 1.00108 1.67814 1.15916 1.07720 1.20011 1.22376 0.91255 1.09084 1.06246 1.23382 0.99004 0.93425 0.92117 1.69550 1.16131 1.11265 1.20887 1.20360 0.87299 0.91440 0.91053 1.19788 0.95736 1.14391 1.12213 0.88187 1.26251 0.94576 0.97822 0.97778 1.70067 1.01512 1.30849 1.29762 0.86232 0.80252 0.80474 0.79636 1.18889 1.19825 1.17942 0.91945 0.90541 0.90589 0.82316 0.84383 0.87579 0.86399 0.85489 0.85838 0.85620 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.88 11.08 59.85 0.66 1.54 16 2 N -0.49 -7.59 3.19 -121.78 -0.39 -7.98 16 3 C 0.02 0.24 11.34 -16.69 -0.19 0.05 16 4 C -0.17 -3.29 10.53 -39.60 -0.42 -3.71 16 5 C -0.09 -1.96 6.00 -106.60 -0.64 -2.60 16 6 C 0.09 1.66 6.82 -83.98 -0.57 1.09 16 7 C -0.16 -2.66 9.98 -39.33 -0.39 -3.05 16 8 C -0.09 -1.62 9.99 -39.62 -0.40 -2.02 16 9 C -0.14 -2.94 7.74 -39.14 -0.30 -3.24 16 10 C 0.08 1.91 5.20 -104.62 -0.54 1.36 16 11 C -0.03 -0.79 6.37 -80.26 -0.51 -1.30 16 12 N -0.40 -10.20 10.26 -7.89 -0.08 -10.28 16 13 C -0.13 -3.06 11.17 -17.23 -0.19 -3.25 16 14 C 0.09 2.20 11.17 -17.38 -0.19 2.00 16 15 N -0.46 -12.62 8.12 -9.54 -0.08 -12.70 16 16 C 0.22 6.09 6.67 -82.63 -0.55 5.54 16 17 C -0.39 -10.08 7.90 -37.97 -0.30 -10.38 16 18 H 0.10 2.46 5.82 -52.49 -0.31 2.15 16 19 C 0.06 1.54 5.49 -17.32 -0.10 1.45 16 20 N -0.70 -17.87 11.54 55.56 0.64 -17.23 16 21 Si 0.91 17.79 29.56 -169.99 -5.03 12.76 16 22 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 23 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 24 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.69 8.13 -51.93 -0.42 0.27 16 28 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 29 H 0.14 2.81 8.06 -52.49 -0.42 2.38 16 30 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.13 2.67 7.39 -52.48 -0.39 2.28 16 33 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 34 H 0.13 2.61 8.06 -52.48 -0.42 2.19 16 35 H 0.28 6.38 8.29 -40.82 -0.34 6.04 16 LS Contribution 305.69 15.07 4.61 4.61 Total: -1.00 -31.34 305.69 -8.59 -39.93 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -3.63 Total: 7.42 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -4.63 Total: -16.53 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 0.09 Total: -48.19 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.34 -8.59 -39.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241819256.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.416 kcal (2) G-P(sol) polarization free energy of solvation -31.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds