Wall clock time and date at job start Tue Mar 31 2020 01:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36703 * 125.56517 * 2 1 4 4 C 1.34524 * 109.59210 * 179.97438 * 3 2 1 5 5 C 1.41625 * 107.83387 * 359.97438 * 4 3 2 6 6 C 1.37874 * 125.56375 * 179.97438 * 2 1 3 7 7 C 1.39004 * 133.33253 * 0.04137 * 6 2 1 8 8 C 1.38162 * 120.28301 * 179.97438 * 7 6 2 9 9 C 1.38204 * 120.81498 * 359.78186 * 8 7 6 10 10 C 1.39446 * 120.23749 * 0.47519 * 9 8 7 11 11 C 1.47329 * 120.32220 * 179.78758 * 10 9 8 12 12 N 1.33160 * 120.55766 * 129.70558 * 11 10 9 13 13 C 1.31835 * 120.02582 * 180.02562 * 12 11 10 14 14 C 1.39089 * 121.23455 * 359.97438 * 13 12 11 15 15 N 1.31491 * 121.16702 * 0.02562 * 14 13 12 16 16 C 1.34117 * 119.86547 * 359.97438 * 15 14 13 17 17 C 1.40624 * 120.58902 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99889 * 171.79205 * 17 16 15 19 19 C 1.40124 * 120.00117 * 351.79108 * 17 16 15 20 20 N 1.30710 * 119.99842 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00317 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47090 * 89.99397 * 21 19 17 23 23 H 1.48496 * 109.47094 * 209.99783 * 21 19 17 24 24 H 1.48504 * 109.46574 * 329.99523 * 21 19 17 25 25 H 1.08993 * 109.47062 * 270.04710 * 1 2 3 26 26 H 1.08999 * 109.47007 * 30.04293 * 1 2 3 27 27 H 1.09001 * 109.47499 * 150.03905 * 1 2 3 28 28 H 1.07995 * 125.20615 * 359.95908 * 3 2 1 29 29 H 1.07999 * 126.08066 * 180.02562 * 4 3 2 30 30 H 1.08001 * 119.85480 * 359.97438 * 7 6 2 31 31 H 1.08001 * 119.59381 * 180.02562 * 8 7 6 32 32 H 1.08005 * 119.88517 * 180.25924 * 9 8 7 33 33 H 1.07997 * 119.37656 * 180.02562 * 13 12 11 34 34 H 1.08007 * 119.41193 * 180.28272 * 14 13 12 35 35 H 0.96997 * 120.00030 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2601 1.1120 0.0000 4 6 3.5534 0.7418 0.0006 5 6 3.5994 -0.6737 0.0016 6 6 2.2669 -1.1216 0.0005 7 6 1.9992 -2.4856 0.0004 8 6 3.0358 -3.3990 0.0005 9 6 4.3517 -2.9766 -0.0038 10 6 4.6521 -1.6149 0.0017 11 6 6.0542 -1.1625 0.0018 12 7 6.4724 -0.2537 -0.8770 13 6 7.7296 0.1432 -0.8678 14 6 8.6412 -0.3698 0.0489 15 7 8.2798 -1.2690 0.9376 16 6 7.0119 -1.7050 0.9689 17 6 6.6087 -2.6659 1.9132 18 1 5.5628 -2.9132 2.0192 19 6 7.5641 -3.3026 2.7166 20 7 8.8300 -3.0037 2.5880 21 14 7.0287 -4.5795 3.9706 22 1 7.0272 -5.9234 3.3388 23 1 7.9718 -4.5727 5.1176 24 1 5.6613 -4.2574 4.4521 25 1 -0.3633 0.0008 1.0276 26 1 -0.3633 0.8896 -0.5145 27 1 -0.3634 -0.8903 -0.5132 28 1 1.9045 2.1317 -0.0006 29 1 4.4051 1.4059 0.0011 30 1 0.9765 -2.8328 0.0002 31 1 2.8151 -4.4562 0.0000 32 1 5.1503 -3.7037 -0.0079 33 1 8.0574 0.8812 -1.5850 34 1 9.6630 -0.0203 0.0330 35 1 9.4914 -3.4446 3.1438 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241819256.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:11 Heat of formation + Delta-G solvation = 86.037762 kcal Electronic energy + Delta-G solvation = -20739.605613 eV Core-core repulsion = 17702.175246 eV Total energy + Delta-G solvation = -3037.430367 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.22381 -40.47708 -37.75174 -35.99592 -34.37620 -33.54805 -32.61767 -30.22041 -29.62222 -27.91622 -26.98552 -24.86191 -23.79078 -22.72011 -22.23412 -20.64019 -19.53132 -18.06522 -17.77702 -17.20504 -16.75769 -16.35180 -16.08748 -16.00615 -15.62271 -15.03389 -14.49671 -14.29862 -14.08261 -13.68306 -13.60234 -13.35940 -13.29614 -13.05261 -12.98542 -12.66164 -12.34970 -12.06860 -11.93646 -11.73042 -11.61829 -11.47247 -11.02956 -10.46431 -9.57846 -9.30939 -8.95356 -8.49023 -8.20061 -6.60844 0.05451 0.67655 0.86743 1.24309 1.37998 1.52687 1.55474 1.95836 2.05076 2.16601 2.74518 3.11618 3.76310 3.78365 4.02600 4.08924 4.17663 4.21714 4.39486 4.40567 4.47414 4.55538 4.72135 4.73317 4.78218 4.92895 4.95012 5.05381 5.10455 5.16632 5.23796 5.43928 5.72160 5.79920 5.88621 5.95681 6.05006 6.14928 6.40749 6.47992 6.59953 6.73791 7.37933 7.92221 8.24104 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016682 B = 0.006691 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.069141 B = 4183.534050 C = 5356.962679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.484 5.484 3 C 0.057 3.943 4 C -0.227 4.227 5 C -0.118 4.118 6 C 0.073 3.927 7 C -0.135 4.135 8 C -0.100 4.100 9 C -0.147 4.147 10 C 0.030 3.970 11 C -0.035 4.035 12 N -0.423 5.423 13 C -0.136 4.136 14 C 0.076 3.924 15 N -0.496 5.496 16 C 0.189 3.811 17 C -0.411 4.411 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.740 5.740 21 Si 0.989 3.011 22 H -0.253 1.253 23 H -0.264 1.264 24 H -0.253 1.253 25 H 0.079 0.921 26 H 0.106 0.894 27 H 0.091 0.909 28 H 0.207 0.793 29 H 0.114 0.886 30 H 0.151 0.849 31 H 0.155 0.845 32 H 0.110 0.890 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.046 0.834 -0.865 15.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.167 5.167 3 C -0.070 4.070 4 C -0.252 4.252 5 C -0.123 4.123 6 C -0.033 4.033 7 C -0.156 4.156 8 C -0.119 4.119 9 C -0.168 4.168 10 C 0.028 3.972 11 C -0.185 4.185 12 N -0.134 5.134 13 C -0.296 4.296 14 C -0.092 4.092 15 N -0.213 5.213 16 C 0.064 3.936 17 C -0.441 4.441 18 H 0.120 0.880 19 C -0.204 4.204 20 N -0.361 5.361 21 Si 0.807 3.193 22 H -0.177 1.177 23 H -0.188 1.188 24 H -0.176 1.176 25 H 0.098 0.902 26 H 0.124 0.876 27 H 0.110 0.890 28 H 0.223 0.777 29 H 0.132 0.868 30 H 0.169 0.831 31 H 0.173 0.827 32 H 0.128 0.872 33 H 0.171 0.829 34 H 0.172 0.828 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.121 0.873 -0.804 15.167 hybrid contribution 0.954 -0.035 0.281 0.995 sum -14.167 0.838 -0.523 14.201 Atomic orbital electron populations 1.22224 0.74174 1.05816 1.04139 1.44099 1.07186 1.03361 1.62027 1.22239 0.88916 0.92728 1.03095 1.20643 0.96956 0.93715 1.13871 1.18519 0.92536 0.94370 1.06886 1.18440 0.89181 0.89813 1.05916 1.20236 1.00397 0.88201 1.06723 1.20944 0.90636 1.00351 0.99953 1.21071 0.97523 0.93775 1.04413 1.17951 0.88850 0.92793 0.97571 1.21681 0.94856 1.02646 0.99277 1.67889 1.16634 1.08423 1.20486 1.22876 0.90890 1.09270 1.06527 1.23849 1.00492 0.93042 0.91858 1.69496 1.16721 1.12673 1.22454 1.20849 0.87912 0.92622 0.92258 1.20035 0.96321 1.14905 1.12856 0.87958 1.27215 0.94218 0.99564 0.99362 1.70140 1.02775 1.32206 1.30939 0.85099 0.79823 0.77587 0.76796 1.17670 1.18794 1.17633 0.90225 0.87581 0.89047 0.77676 0.86837 0.83138 0.82747 0.87217 0.82868 0.82765 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.11 11.08 127.77 1.42 2.52 16 2 N -0.48 -13.14 3.19 -539.19 -1.72 -14.86 16 3 C 0.06 1.64 11.34 83.08 0.94 2.58 16 4 C -0.23 -9.11 10.53 22.26 0.23 -8.87 16 5 C -0.12 -5.18 6.00 -21.14 -0.13 -5.31 16 6 C 0.07 2.55 6.82 38.95 0.27 2.82 16 7 C -0.13 -4.08 9.98 22.44 0.22 -3.86 16 8 C -0.10 -3.30 9.99 22.24 0.22 -3.08 16 9 C -0.15 -6.32 7.74 22.55 0.17 -6.14 16 10 C 0.03 1.48 5.20 -19.87 -0.10 1.38 16 11 C -0.04 -1.93 6.37 43.50 0.28 -1.66 16 12 N -0.42 -22.64 10.26 -178.87 -1.83 -24.48 16 13 C -0.14 -6.74 11.17 84.90 0.95 -5.79 16 14 C 0.08 3.86 11.17 84.95 0.95 4.81 16 15 N -0.50 -28.67 8.12 -184.10 -1.50 -30.17 16 16 C 0.19 10.94 6.67 41.54 0.28 11.22 16 17 C -0.41 -22.28 7.90 23.31 0.18 -22.09 16 18 H 0.10 5.29 5.82 -2.91 -0.02 5.27 16 19 C 0.02 1.03 5.49 85.32 0.47 1.50 16 20 N -0.74 -39.08 11.54 21.86 0.25 -38.83 16 21 Si 0.99 36.82 29.56 68.60 2.03 38.85 16 22 H -0.25 -8.87 7.11 99.48 0.71 -8.16 16 23 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 24 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 25 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.09 1.11 8.13 -2.39 -0.02 1.09 16 28 H 0.21 3.86 8.06 -2.91 -0.02 3.84 16 29 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 30 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 31 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 32 H 0.11 4.91 7.39 -2.91 -0.02 4.89 16 33 H 0.15 6.38 8.06 -2.91 -0.02 6.36 16 34 H 0.16 6.62 8.06 -2.91 -0.02 6.59 16 35 H 0.29 13.53 8.29 -92.71 -0.77 12.76 16 Total: -1.00 -74.72 305.69 4.69 -70.03 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 1.11 Total: 29.43 kcal Atomic # 6 Polarization: -36.32 SS G_CDS: 6.35 Total: -29.97 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -4.80 Total: -108.34 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.85 kcal Total: -74.72 4.69 -70.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241819256.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.064 kcal (2) G-P(sol) polarization free energy of solvation -74.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds