Wall clock time and date at job start Tue Mar 31 2020 01:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36702 * 125.06982 * 2 1 4 4 C 1.34434 * 109.88581 * 179.97438 * 3 2 1 5 5 C 1.46164 * 107.00100 * 359.76021 * 4 3 2 6 6 C 1.37753 * 125.07043 * 179.97438 * 2 1 3 7 7 C 1.39067 * 133.37272 * 0.03527 * 6 2 1 8 8 C 1.37957 * 120.21173 * 179.97438 * 7 6 2 9 9 C 1.38426 * 120.83856 * 0.02562 * 8 7 6 10 10 C 1.39030 * 120.22232 * 359.97438 * 9 8 7 11 11 C 1.48005 * 120.30926 * 180.02562 * 10 9 8 12 12 C 1.40181 * 120.00162 * 313.05809 * 11 10 9 13 13 N 1.32136 * 120.28376 * 179.97438 * 12 11 10 14 14 C 1.31906 * 120.30165 * 359.75651 * 13 12 11 15 15 C 1.40834 * 119.99135 * 0.52555 * 14 13 12 16 16 C 1.41304 * 120.14220 * 179.72901 * 15 14 13 17 17 H 1.08000 * 119.99958 * 5.11905 * 16 15 14 18 18 C 1.40028 * 119.99968 * 184.84741 * 16 15 14 19 19 N 1.30732 * 120.00447 * 353.72058 * 18 16 15 20 20 Si 1.86806 * 119.99870 * 173.72380 * 18 16 15 21 21 H 1.48497 * 109.47009 * 89.99943 * 20 18 16 22 22 H 1.48498 * 109.46943 * 209.99985 * 20 18 16 23 23 H 1.48500 * 109.47033 * 329.99806 * 20 18 16 24 24 N 1.32640 * 119.99947 * 133.04609 * 11 10 9 25 25 H 1.09002 * 109.47150 * 270.04684 * 1 2 3 26 26 H 1.09000 * 109.47321 * 30.04054 * 1 2 3 27 27 H 1.08997 * 109.47479 * 150.04234 * 1 2 3 28 28 H 1.07994 * 125.06237 * 359.96408 * 3 2 1 29 29 H 1.08002 * 126.50349 * 179.97438 * 4 3 2 30 30 H 1.08000 * 119.89310 * 0.02562 * 7 6 2 31 31 H 1.08006 * 119.58463 * 180.02562 * 8 7 6 32 32 H 1.07995 * 119.88601 * 179.97438 * 9 8 7 33 33 H 1.07996 * 119.85566 * 359.97438 * 12 11 10 34 34 H 1.08000 * 120.00825 * 180.25191 * 14 13 12 35 35 H 0.96995 * 120.00546 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2505 1.1188 0.0000 4 6 3.5479 0.7667 0.0006 5 6 3.5942 -0.6942 0.0068 6 6 2.2565 -1.1274 0.0005 7 6 1.9779 -2.4899 0.0005 8 6 3.0068 -3.4089 0.0006 9 6 4.3278 -2.9951 0.0012 10 6 4.6365 -1.6395 0.0012 11 6 6.0482 -1.1949 0.0013 12 6 6.9657 -1.7750 0.8884 13 7 8.2275 -1.3827 0.8928 14 6 8.6360 -0.4453 0.0595 15 6 7.7233 0.1499 -0.8327 16 6 8.1562 1.1583 -1.7229 17 1 9.2034 1.4164 -1.7784 18 6 7.2281 1.8191 -2.5370 19 7 5.9830 1.4217 -2.5646 20 14 7.7693 3.2686 -3.5838 21 1 8.2145 2.7799 -4.9135 22 1 6.6311 4.2066 -3.7568 23 1 8.8925 3.9715 -2.9132 24 7 6.4453 -0.2479 -0.8382 25 1 -0.3633 0.0008 1.0277 26 1 -0.3634 0.8896 -0.5145 27 1 -0.3634 -0.8903 -0.5131 28 1 1.8834 2.1345 -0.0006 29 1 4.3953 1.4363 0.0003 30 1 0.9527 -2.8297 -0.0004 31 1 2.7789 -4.4646 0.0001 32 1 5.1212 -3.7278 0.0016 33 1 6.6398 -2.5457 1.5710 34 1 9.6693 -0.1311 0.0644 35 1 5.3401 1.8797 -3.1283 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241820523.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:15 Heat of formation + Delta-G solvation = 105.344264 kcal Electronic energy + Delta-G solvation = -20721.337536 eV Core-core repulsion = 17684.744362 eV Total energy + Delta-G solvation = -3036.593174 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.75969 -38.83117 -36.50732 -34.00657 -32.86287 -31.84181 -30.92670 -28.97016 -28.15147 -26.09767 -25.69572 -23.26810 -22.11578 -21.18608 -20.88935 -19.25262 -17.45573 -16.69907 -15.92880 -15.56309 -15.20314 -15.00045 -14.90124 -14.75380 -13.98413 -13.56121 -13.09152 -12.73967 -12.63671 -12.48117 -12.22032 -11.96264 -11.56140 -11.42100 -11.34838 -11.09237 -10.90082 -10.77969 -10.60160 -10.18537 -9.79233 -9.50557 -9.28808 -8.77041 -7.81598 -7.66463 -7.41146 -6.89553 -6.45243 -4.65329 1.47224 2.10510 2.61509 2.99008 3.03756 3.06747 3.19438 3.21718 3.31505 3.86405 4.43808 4.70310 4.87532 5.09050 5.22682 5.29368 5.34069 5.41482 5.57238 5.74922 5.80931 5.98782 6.04443 6.14542 6.23872 6.39803 6.51067 6.56694 6.78425 6.88391 6.98450 7.01559 7.16287 7.19932 7.30927 7.44800 7.68823 7.72637 7.77009 8.05915 8.44141 8.68448 9.27106 9.85787 10.16287 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015714 B = 0.006792 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.455051 B = 4121.583452 C = 5487.169806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.496 5.496 3 C 0.015 3.985 4 C -0.144 4.144 5 C -0.075 4.075 6 C 0.094 3.906 7 C -0.146 4.146 8 C -0.098 4.098 9 C -0.145 4.145 10 C 0.047 3.953 11 C 0.137 3.863 12 C -0.105 4.105 13 N -0.431 5.431 14 C -0.066 4.066 15 C 0.205 3.795 16 C -0.413 4.413 17 H 0.089 0.911 18 C 0.066 3.934 19 N -0.699 5.699 20 Si 0.908 3.092 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.260 1.260 24 N -0.430 5.430 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.160 0.840 29 H 0.150 0.850 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.098 -0.937 1.718 11.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.183 5.183 3 C -0.108 4.108 4 C -0.169 4.169 5 C -0.081 4.081 6 C -0.012 4.012 7 C -0.167 4.167 8 C -0.117 4.117 9 C -0.166 4.166 10 C 0.045 3.955 11 C -0.011 4.011 12 C -0.263 4.263 13 N -0.142 5.142 14 C -0.236 4.236 15 C 0.079 3.921 16 C -0.445 4.445 17 H 0.107 0.893 18 C -0.161 4.161 19 N -0.319 5.319 20 Si 0.731 3.269 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.184 1.184 24 N -0.147 5.147 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.177 0.823 29 H 0.167 0.833 30 H 0.127 0.873 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.657 -0.820 1.609 11.796 hybrid contribution 0.087 0.720 -0.586 0.933 sum -11.570 -0.100 1.023 11.616 Atomic orbital electron populations 1.21767 0.78226 1.03480 1.02125 1.43616 1.05112 1.04379 1.65147 1.21675 0.90600 0.90519 1.07965 1.21801 0.95399 0.93377 1.06289 1.19047 0.90680 0.93612 1.04745 1.18178 0.90174 0.88114 1.04705 1.19812 0.98757 0.89217 1.08905 1.20554 0.92004 0.98272 1.00859 1.20870 0.96180 0.94362 1.05165 1.18101 0.90477 0.91559 0.95382 1.20680 0.92250 0.94247 0.93886 1.22525 0.90404 1.07303 1.06101 1.67647 1.16182 1.10523 1.19853 1.23190 1.00123 1.00704 0.99552 1.19407 0.88248 0.92395 0.92086 1.19583 0.95503 1.13770 1.15646 0.89264 1.26109 0.94729 0.98370 0.96885 1.70114 1.02375 1.32687 1.26720 0.86312 0.79521 0.80719 0.80300 1.19365 1.20047 1.18382 1.69790 1.15414 1.10193 1.19331 0.92074 0.90521 0.90710 0.82284 0.83277 0.87271 0.86224 0.86097 0.85577 0.85048 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.88 11.02 59.85 0.66 1.54 16 2 N -0.50 -7.71 3.18 -121.81 -0.39 -8.10 16 3 C 0.01 0.24 11.29 -16.72 -0.19 0.05 16 4 C -0.14 -2.96 10.72 -37.75 -0.40 -3.37 16 5 C -0.08 -1.61 6.12 -104.89 -0.64 -2.25 16 6 C 0.09 1.69 6.80 -84.00 -0.57 1.12 16 7 C -0.15 -2.30 9.94 -39.38 -0.39 -2.69 16 8 C -0.10 -1.54 9.99 -39.61 -0.40 -1.94 16 9 C -0.15 -2.72 9.43 -39.22 -0.37 -3.09 16 10 C 0.05 1.04 5.65 -104.66 -0.59 0.45 16 11 C 0.14 3.43 6.27 -82.79 -0.52 2.91 16 12 C -0.10 -2.54 10.63 -16.69 -0.18 -2.72 16 13 N -0.43 -10.94 10.47 -12.02 -0.13 -11.07 16 14 C -0.07 -1.68 10.97 -16.54 -0.18 -1.86 16 15 C 0.21 5.54 6.54 -84.84 -0.56 4.98 16 16 C -0.41 -10.59 9.15 -37.75 -0.35 -10.93 16 17 H 0.09 2.11 7.86 -52.49 -0.41 1.70 16 18 C 0.07 1.60 5.49 -17.35 -0.10 1.51 16 19 N -0.70 -17.68 11.51 55.55 0.64 -17.04 16 20 Si 0.91 17.82 29.56 -169.99 -5.03 12.79 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 22 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 24 N -0.43 -11.65 7.69 -7.53 -0.06 -11.71 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 28 H 0.16 2.04 8.06 -52.49 -0.42 1.62 16 29 H 0.15 3.40 8.06 -52.49 -0.42 2.98 16 30 H 0.11 1.37 8.05 -52.49 -0.42 0.95 16 31 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 32 H 0.12 2.11 7.97 -52.49 -0.42 1.69 16 33 H 0.13 2.74 7.98 -52.49 -0.42 2.32 16 34 H 0.13 3.03 8.06 -52.49 -0.42 2.60 16 35 H 0.28 6.41 8.29 -40.82 -0.34 6.07 16 LS Contribution 310.50 15.07 4.68 4.68 Total: -1.00 -30.75 310.50 -8.81 -39.56 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -3.76 Total: 7.17 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -4.77 Total: -16.28 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.07 Total: -47.92 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.75 -8.81 -39.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241820523.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.901 kcal (2) G-P(sol) polarization free energy of solvation -30.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds