Wall clock time and date at job start Tue Mar 31 2020 01:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36702 * 125.06982 * 2 1 4 4 C 1.34434 * 109.88581 * 179.97438 * 3 2 1 5 5 C 1.46164 * 107.00100 * 359.76021 * 4 3 2 6 6 C 1.37753 * 125.07043 * 179.97438 * 2 1 3 7 7 C 1.39067 * 133.37272 * 0.03527 * 6 2 1 8 8 C 1.37957 * 120.21173 * 179.97438 * 7 6 2 9 9 C 1.38426 * 120.83856 * 0.02562 * 8 7 6 10 10 C 1.39030 * 120.22232 * 359.97438 * 9 8 7 11 11 C 1.48005 * 120.30926 * 180.02562 * 10 9 8 12 12 C 1.40181 * 120.00162 * 313.05809 * 11 10 9 13 13 N 1.32136 * 120.28376 * 179.97438 * 12 11 10 14 14 C 1.31906 * 120.30165 * 359.75651 * 13 12 11 15 15 C 1.40834 * 119.99135 * 0.52555 * 14 13 12 16 16 C 1.41304 * 120.14220 * 179.72901 * 15 14 13 17 17 H 1.08000 * 119.99958 * 5.11905 * 16 15 14 18 18 C 1.40028 * 119.99968 * 184.84741 * 16 15 14 19 19 N 1.30732 * 120.00447 * 353.72058 * 18 16 15 20 20 Si 1.86806 * 119.99870 * 173.72380 * 18 16 15 21 21 H 1.48497 * 109.47009 * 89.99943 * 20 18 16 22 22 H 1.48498 * 109.46943 * 209.99985 * 20 18 16 23 23 H 1.48500 * 109.47033 * 329.99806 * 20 18 16 24 24 N 1.32640 * 119.99947 * 133.04609 * 11 10 9 25 25 H 1.09002 * 109.47150 * 270.04684 * 1 2 3 26 26 H 1.09000 * 109.47321 * 30.04054 * 1 2 3 27 27 H 1.08997 * 109.47479 * 150.04234 * 1 2 3 28 28 H 1.07994 * 125.06237 * 359.96408 * 3 2 1 29 29 H 1.08002 * 126.50349 * 179.97438 * 4 3 2 30 30 H 1.08000 * 119.89310 * 0.02562 * 7 6 2 31 31 H 1.08006 * 119.58463 * 180.02562 * 8 7 6 32 32 H 1.07995 * 119.88601 * 179.97438 * 9 8 7 33 33 H 1.07996 * 119.85566 * 359.97438 * 12 11 10 34 34 H 1.08000 * 120.00825 * 180.25191 * 14 13 12 35 35 H 0.96995 * 120.00546 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2505 1.1188 0.0000 4 6 3.5479 0.7667 0.0006 5 6 3.5942 -0.6942 0.0068 6 6 2.2565 -1.1274 0.0005 7 6 1.9779 -2.4899 0.0005 8 6 3.0068 -3.4089 0.0006 9 6 4.3278 -2.9951 0.0012 10 6 4.6365 -1.6395 0.0012 11 6 6.0482 -1.1949 0.0013 12 6 6.9657 -1.7750 0.8884 13 7 8.2275 -1.3827 0.8928 14 6 8.6360 -0.4453 0.0595 15 6 7.7233 0.1499 -0.8327 16 6 8.1562 1.1583 -1.7229 17 1 9.2034 1.4164 -1.7784 18 6 7.2281 1.8191 -2.5370 19 7 5.9830 1.4217 -2.5646 20 14 7.7693 3.2686 -3.5838 21 1 8.2145 2.7799 -4.9135 22 1 6.6311 4.2066 -3.7568 23 1 8.8925 3.9715 -2.9132 24 7 6.4453 -0.2479 -0.8382 25 1 -0.3633 0.0008 1.0277 26 1 -0.3634 0.8896 -0.5145 27 1 -0.3634 -0.8903 -0.5131 28 1 1.8834 2.1345 -0.0006 29 1 4.3953 1.4363 0.0003 30 1 0.9527 -2.8297 -0.0004 31 1 2.7789 -4.4646 0.0001 32 1 5.1212 -3.7278 0.0016 33 1 6.6398 -2.5457 1.5710 34 1 9.6693 -0.1311 0.0644 35 1 5.3401 1.8797 -3.1283 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241820523.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:14 Heat of formation + Delta-G solvation = 87.688842 kcal Electronic energy + Delta-G solvation = -20722.103133 eV Core-core repulsion = 17684.744362 eV Total energy + Delta-G solvation = -3037.358770 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.08823 -40.70417 -37.87145 -35.90036 -34.43171 -33.37794 -32.59671 -30.48788 -29.60141 -27.85028 -26.91444 -24.94857 -23.96331 -22.69434 -22.28448 -20.70298 -19.31419 -18.13310 -17.34186 -17.17767 -17.07429 -16.64134 -16.22181 -16.07661 -15.47822 -15.08807 -14.57536 -14.40641 -13.98751 -13.62365 -13.48993 -13.37058 -13.23250 -13.03495 -12.97759 -12.63011 -12.46597 -12.11793 -12.08025 -11.76196 -11.64469 -11.45225 -11.00203 -10.39510 -9.65236 -9.31442 -9.01083 -8.38006 -8.23827 -6.62859 -0.02281 0.70127 0.85719 1.16750 1.40643 1.51348 1.56752 1.93353 2.05015 2.19850 2.77086 3.06474 3.64096 3.79349 4.00056 4.05595 4.08870 4.13297 4.35140 4.40838 4.47430 4.54177 4.66365 4.74881 4.76588 4.84962 4.92220 5.04936 5.14221 5.16363 5.26236 5.35989 5.61327 5.73637 5.78586 5.92137 5.99235 6.13468 6.36529 6.52093 6.58015 6.73942 7.31068 7.92742 8.33812 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015714 B = 0.006792 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.455051 B = 4121.583452 C = 5487.169806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.489 5.489 3 C 0.049 3.951 4 C -0.203 4.203 5 C -0.107 4.107 6 C 0.080 3.920 7 C -0.126 4.126 8 C -0.097 4.097 9 C -0.144 4.144 10 C -0.006 4.006 11 C 0.134 3.866 12 C -0.119 4.119 13 N -0.439 5.439 14 C -0.090 4.090 15 C 0.173 3.827 16 C -0.437 4.437 17 H 0.101 0.899 18 C 0.022 3.978 19 N -0.727 5.727 20 Si 0.990 3.010 21 H -0.262 1.262 22 H -0.268 1.268 23 H -0.253 1.253 24 N -0.455 5.455 25 H 0.081 0.919 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.198 0.802 29 H 0.108 0.892 30 H 0.154 0.846 31 H 0.163 0.837 32 H 0.124 0.876 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.307 -1.048 1.112 14.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.173 5.173 3 C -0.075 4.075 4 C -0.229 4.229 5 C -0.113 4.113 6 C -0.027 4.027 7 C -0.146 4.146 8 C -0.116 4.116 9 C -0.164 4.164 10 C -0.008 4.008 11 C -0.014 4.014 12 C -0.278 4.278 13 N -0.150 5.150 14 C -0.258 4.258 15 C 0.047 3.953 16 C -0.468 4.468 17 H 0.119 0.881 18 C -0.203 4.203 19 N -0.347 5.347 20 Si 0.809 3.191 21 H -0.187 1.187 22 H -0.192 1.192 23 H -0.177 1.177 24 N -0.173 5.173 25 H 0.099 0.901 26 H 0.118 0.882 27 H 0.110 0.890 28 H 0.215 0.785 29 H 0.127 0.873 30 H 0.172 0.828 31 H 0.181 0.819 32 H 0.142 0.858 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.883 -0.957 1.019 14.949 hybrid contribution 0.897 0.709 -0.361 1.199 sum -13.986 -0.248 0.659 14.004 Atomic orbital electron populations 1.22201 0.74423 1.05620 1.04101 1.43956 1.07171 1.03069 1.63149 1.22080 0.89364 0.92369 1.03727 1.21555 0.96286 0.93312 1.11704 1.19330 0.92409 0.93869 1.05658 1.18456 0.89217 0.89789 1.05211 1.20337 1.00908 0.87912 1.05478 1.20995 0.90418 1.00564 0.99622 1.21091 0.98153 0.92967 1.04205 1.18245 0.89167 0.93438 0.99967 1.21251 0.94174 0.93174 0.92834 1.22906 0.90278 1.08008 1.06614 1.67638 1.16846 1.10626 1.19906 1.23400 1.00825 1.01464 1.00156 1.19906 0.88918 0.93359 0.93117 1.20014 0.96588 1.14038 1.16126 0.88104 1.27065 0.94408 1.01050 0.97754 1.70239 1.03527 1.33938 1.27026 0.85086 0.79253 0.76601 0.78116 1.18717 1.19204 1.17656 1.69807 1.15506 1.11420 1.20577 0.90077 0.88170 0.88970 0.78514 0.87343 0.82822 0.81924 0.85753 0.83449 0.83491 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.18 11.02 127.77 1.41 2.59 16 2 N -0.49 -13.78 3.18 -539.28 -1.71 -15.49 16 3 C 0.05 1.58 11.29 83.06 0.94 2.51 16 4 C -0.20 -8.79 10.72 23.46 0.25 -8.54 16 5 C -0.11 -4.70 6.12 -20.03 -0.12 -4.82 16 6 C 0.08 2.72 6.80 38.99 0.27 2.99 16 7 C -0.13 -3.48 9.94 22.40 0.22 -3.26 16 8 C -0.10 -2.77 9.99 22.25 0.22 -2.55 16 9 C -0.14 -5.35 9.43 22.50 0.21 -5.14 16 10 C -0.01 -0.28 5.65 -19.89 -0.11 -0.40 16 11 C 0.13 7.11 6.27 42.09 0.26 7.37 16 12 C -0.12 -6.11 10.63 85.12 0.90 -5.21 16 13 N -0.44 -23.40 10.47 -191.94 -2.01 -25.41 16 14 C -0.09 -4.84 10.97 85.32 0.94 -3.91 16 15 C 0.17 9.92 6.54 40.23 0.26 10.19 16 16 C -0.44 -23.38 9.15 23.46 0.21 -23.17 16 17 H 0.10 4.94 7.86 -2.91 -0.02 4.91 16 18 C 0.02 1.08 5.49 85.29 0.47 1.55 16 19 N -0.73 -38.42 11.51 21.84 0.25 -38.17 16 20 Si 0.99 36.99 29.56 68.60 2.03 39.01 16 21 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 22 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 23 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 24 N -0.46 -26.33 7.69 -177.74 -1.37 -27.70 16 25 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.09 1.16 8.09 -2.39 -0.02 1.14 16 28 H 0.20 4.54 8.06 -2.91 -0.02 4.52 16 29 H 0.11 5.46 8.06 -2.91 -0.02 5.44 16 30 H 0.15 2.88 8.05 -2.91 -0.02 2.86 16 31 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 32 H 0.12 4.36 7.97 -2.91 -0.02 4.34 16 33 H 0.15 6.66 7.98 -2.91 -0.02 6.64 16 34 H 0.15 7.14 8.06 -2.91 -0.02 7.12 16 35 H 0.28 13.53 8.29 -92.71 -0.77 12.76 16 Total: -1.00 -73.20 310.50 4.63 -68.57 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 1.11 Total: 28.95 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: 6.34 Total: -29.77 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -4.84 Total: -106.76 kcal Atomic # 14 Polarization: 36.99 SS G_CDS: 2.03 Total: 39.01 kcal Total: -73.20 4.63 -68.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241820523.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.258 kcal (2) G-P(sol) polarization free energy of solvation -73.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds