Wall clock time and date at job start Tue Mar 31 2020 01:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36702 * 125.56554 * 2 1 4 4 C 1.34541 * 109.59104 * 179.97438 * 3 2 1 5 5 C 1.41638 * 107.82974 * 0.02562 * 4 3 2 6 6 C 1.37877 * 125.56584 * 180.02562 * 2 1 3 7 7 C 1.39008 * 133.31605 * 359.97438 * 6 2 1 8 8 C 1.38202 * 120.26823 * 180.02562 * 7 6 2 9 9 C 1.38196 * 120.80650 * 359.97438 * 8 7 6 10 10 C 1.39430 * 120.24567 * 0.02562 * 9 8 7 11 11 C 1.47463 * 120.31801 * 179.97438 * 10 9 8 12 12 C 1.40658 * 120.80769 * 129.72363 * 11 10 9 13 13 N 1.31505 * 119.07349 * 179.73643 * 12 11 10 14 14 C 1.33731 * 120.84570 * 0.52536 * 13 12 11 15 15 C 1.40856 * 119.11523 * 179.72306 * 14 13 12 16 16 H 1.07998 * 119.99993 * 173.62661 * 15 14 13 17 17 C 1.40091 * 119.99881 * 353.62985 * 15 14 13 18 18 N 1.30693 * 119.99655 * 6.35098 * 17 15 14 19 19 Si 1.86797 * 120.00185 * 186.34518 * 17 15 14 20 20 H 1.48501 * 109.46716 * 94.98538 * 19 17 15 21 21 H 1.48493 * 109.47172 * 214.98922 * 19 17 15 22 22 H 1.48506 * 109.47049 * 334.98728 * 19 17 15 23 23 N 1.33734 * 121.77478 * 359.74968 * 14 13 12 24 24 C 1.31507 * 120.84289 * 359.97344 * 23 14 13 25 25 H 1.09000 * 109.47587 * 89.96849 * 1 2 3 26 26 H 1.08999 * 109.47238 * 209.97103 * 1 2 3 27 27 H 1.09003 * 109.46681 * 329.96872 * 1 2 3 28 28 H 1.08003 * 125.20054 * 359.97438 * 3 2 1 29 29 H 1.08003 * 126.08813 * 179.97438 * 4 3 2 30 30 H 1.07994 * 119.86891 * 0.32365 * 7 6 2 31 31 H 1.07993 * 119.59289 * 179.97438 * 8 7 6 32 32 H 1.08008 * 119.87639 * 180.02562 * 9 8 7 33 33 H 1.08003 * 120.46493 * 359.97438 * 12 11 10 34 34 H 0.96999 * 120.00049 * 179.97438 * 18 17 15 35 35 H 1.08005 * 120.45968 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2601 1.1120 0.0000 4 6 3.5536 0.7417 0.0006 5 6 3.5994 -0.6739 0.0003 6 6 2.2669 -1.1216 -0.0005 7 6 1.9989 -2.4855 -0.0007 8 6 3.0358 -3.3992 -0.0007 9 6 4.3515 -2.9766 -0.0011 10 6 4.6518 -1.6150 -0.0009 11 6 6.0553 -1.1623 -0.0008 12 6 6.5039 -0.2063 -0.9298 13 7 7.7614 0.1770 -0.8957 14 6 8.6110 -0.3378 -0.0004 15 6 9.9516 0.0946 -0.0002 16 1 10.6243 -0.2323 0.7788 17 6 10.4121 0.9489 -1.0105 18 7 9.5722 1.4438 -1.8809 19 14 12.2266 1.3807 -1.1134 20 1 12.8996 0.4654 -2.0698 21 1 12.3761 2.7822 -1.5807 22 1 12.8464 1.2375 0.2285 23 7 8.2223 -1.2525 0.8945 24 6 6.9792 -1.6803 0.9247 25 1 -0.3634 0.0006 -1.0276 26 1 -0.3634 -0.8902 0.5134 27 1 -0.3633 0.8898 0.5143 28 1 1.9043 2.1317 -0.0004 29 1 4.4054 1.4057 0.0003 30 1 0.9763 -2.8327 -0.0056 31 1 2.8151 -4.4564 -0.0004 32 1 5.1502 -3.7038 -0.0015 33 1 5.8242 0.2102 -1.6586 34 1 9.8910 2.0356 -2.5802 35 1 6.6721 -2.4195 1.6498 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241821852.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:29 Heat of formation + Delta-G solvation = 107.475989 kcal Electronic energy + Delta-G solvation = -20185.788158 eV Core-core repulsion = 17149.287423 eV Total energy + Delta-G solvation = -3036.500735 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.07531 -38.81372 -36.56289 -33.93923 -32.92430 -31.76082 -31.35462 -28.99860 -28.33783 -26.15917 -25.86409 -22.78053 -22.58832 -21.24212 -20.96756 -19.37223 -17.89213 -16.73909 -16.11590 -15.90721 -15.18423 -15.01534 -14.98650 -14.47496 -13.85124 -13.60723 -12.96880 -12.83026 -12.72934 -12.64280 -12.40818 -12.15733 -12.01780 -11.35501 -11.33145 -11.12794 -10.91557 -10.84967 -10.74658 -10.30559 -9.58001 -9.27406 -9.10579 -9.08226 -7.99283 -7.79141 -7.39120 -6.91331 -6.58125 -4.74100 1.41374 2.04858 2.62636 3.00061 3.02548 3.04348 3.07278 3.08125 3.15260 3.83640 4.37879 4.62681 4.74101 5.01666 5.10065 5.21232 5.29774 5.43867 5.59400 5.79153 5.81996 5.89514 5.94939 5.98203 6.09625 6.22766 6.34752 6.45071 6.58138 6.84404 6.93639 6.99188 7.09443 7.17752 7.22575 7.46894 7.57519 7.63996 7.69822 8.11428 8.45473 8.52842 9.09582 10.05219 10.24850 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.030879 B = 0.004165 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.543236 B = 6721.626112 C = 7371.368566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.490 5.490 3 C 0.021 3.979 4 C -0.179 4.179 5 C -0.106 4.106 6 C 0.095 3.905 7 C -0.165 4.165 8 C -0.087 4.087 9 C -0.168 4.168 10 C 0.078 3.922 11 C -0.326 4.326 12 C 0.186 3.814 13 N -0.509 5.509 14 C 0.384 3.616 15 C -0.387 4.387 16 H 0.095 0.905 17 C 0.063 3.937 18 N -0.701 5.701 19 Si 0.920 3.080 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.258 1.258 23 N -0.595 5.595 24 C 0.187 3.813 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.162 0.838 29 H 0.142 0.858 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.129 0.871 34 H 0.277 0.723 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.903 -1.421 0.888 14.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.175 5.175 3 C -0.103 4.103 4 C -0.204 4.204 5 C -0.110 4.110 6 C -0.010 4.010 7 C -0.186 4.186 8 C -0.106 4.106 9 C -0.188 4.188 10 C 0.076 3.924 11 C -0.336 4.336 12 C 0.009 3.991 13 N -0.225 5.225 14 C 0.150 3.850 15 C -0.420 4.420 16 H 0.113 0.887 17 C -0.165 4.165 18 N -0.322 5.322 19 Si 0.743 3.257 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.181 1.181 23 N -0.313 5.313 24 C 0.013 3.987 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.179 0.821 29 H 0.159 0.841 30 H 0.125 0.875 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.146 0.854 34 H 0.088 0.912 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.150 -0.835 0.689 13.195 hybrid contribution -0.490 -0.060 -0.156 0.518 sum -13.640 -0.894 0.533 13.680 Atomic orbital electron populations 1.21805 0.77839 1.03614 1.02435 1.43783 1.05249 1.04730 1.63708 1.21744 0.90303 0.90908 1.07335 1.20765 0.95809 0.94164 1.09624 1.18284 0.91441 0.93600 1.07687 1.18241 0.89862 0.88220 1.04721 1.19757 0.98618 0.89213 1.10977 1.20602 0.92254 0.98117 0.99620 1.20990 0.95854 0.94794 1.07134 1.18225 0.91001 0.91076 0.92142 1.19727 0.93544 1.11805 1.08520 1.23053 0.93340 0.89472 0.93212 1.69356 1.01458 1.26975 1.24726 1.19924 0.93982 0.86569 0.84512 1.19375 0.93082 1.21324 1.08250 0.88729 1.26181 1.00571 0.94858 0.94878 1.70150 1.35573 1.17692 1.08742 0.86098 0.81163 0.78384 0.80016 1.19215 1.19879 1.18149 1.68653 1.16762 1.17737 1.28168 1.22679 0.88661 0.93874 0.93517 0.91790 0.90517 0.90366 0.82079 0.84053 0.87547 0.86571 0.86470 0.85388 0.91155 0.85283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 11.07 59.85 0.66 1.41 16 2 N -0.49 -6.73 3.19 -121.77 -0.39 -7.12 16 3 C 0.02 0.30 11.34 -16.69 -0.19 0.11 16 4 C -0.18 -3.10 10.10 -39.59 -0.40 -3.50 16 5 C -0.11 -1.98 5.91 -106.60 -0.63 -2.61 16 6 C 0.10 1.56 6.82 -83.98 -0.57 0.99 16 7 C -0.16 -2.43 9.98 -39.31 -0.39 -2.82 16 8 C -0.09 -1.29 10.00 -39.61 -0.40 -1.69 16 9 C -0.17 -2.93 9.54 -39.15 -0.37 -3.30 16 10 C 0.08 1.54 5.54 -104.58 -0.58 0.96 16 11 C -0.33 -7.40 5.45 -104.31 -0.57 -7.96 16 12 C 0.19 4.54 10.13 -16.78 -0.17 4.37 16 13 N -0.51 -14.08 7.84 -12.39 -0.10 -14.17 16 14 C 0.38 10.83 7.34 -158.10 -1.16 9.67 16 15 C -0.39 -10.50 9.33 -37.90 -0.35 -10.86 16 16 H 0.09 2.47 7.86 -52.49 -0.41 2.05 16 17 C 0.06 1.58 5.49 -17.34 -0.10 1.48 16 18 N -0.70 -18.17 11.42 55.55 0.63 -17.53 16 19 Si 0.92 18.20 29.56 -169.99 -5.03 13.17 16 20 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 21 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 22 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 23 N -0.59 -15.88 10.33 -12.39 -0.13 -16.01 16 24 C 0.19 4.39 10.86 -16.78 -0.18 4.21 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.60 8.13 -51.93 -0.42 0.17 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.16 1.67 8.06 -52.48 -0.42 1.25 16 29 H 0.14 2.55 7.74 -52.48 -0.41 2.15 16 30 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 31 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 32 H 0.12 1.95 8.05 -52.48 -0.42 1.52 16 33 H 0.13 2.89 7.94 -52.48 -0.42 2.48 16 34 H 0.28 6.42 8.29 -40.82 -0.34 6.08 16 35 H 0.13 2.63 8.06 -52.48 -0.42 2.21 16 LS Contribution 309.11 15.07 4.66 4.66 Total: -1.00 -31.45 309.11 -9.50 -40.95 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -3.75 Total: 5.60 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -5.40 Total: -9.54 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.02 Total: -54.84 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.45 -9.50 -40.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241821852.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.428 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds