Wall clock time and date at job start Tue Mar 31 2020 01:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36702 * 125.56554 * 2 1 4 4 C 1.34541 * 109.59104 * 179.97438 * 3 2 1 5 5 C 1.41638 * 107.82974 * 0.02562 * 4 3 2 6 6 C 1.37877 * 125.56584 * 180.02562 * 2 1 3 7 7 C 1.39008 * 133.31605 * 359.97438 * 6 2 1 8 8 C 1.38202 * 120.26823 * 180.02562 * 7 6 2 9 9 C 1.38196 * 120.80650 * 359.97438 * 8 7 6 10 10 C 1.39430 * 120.24567 * 0.02562 * 9 8 7 11 11 C 1.47463 * 120.31801 * 179.97438 * 10 9 8 12 12 C 1.40658 * 120.80769 * 129.72363 * 11 10 9 13 13 N 1.31505 * 119.07349 * 179.73643 * 12 11 10 14 14 C 1.33731 * 120.84570 * 0.52536 * 13 12 11 15 15 C 1.40856 * 119.11523 * 179.72306 * 14 13 12 16 16 H 1.07998 * 119.99993 * 173.62661 * 15 14 13 17 17 C 1.40091 * 119.99881 * 353.62985 * 15 14 13 18 18 N 1.30693 * 119.99655 * 6.35098 * 17 15 14 19 19 Si 1.86797 * 120.00185 * 186.34518 * 17 15 14 20 20 H 1.48501 * 109.46716 * 94.98538 * 19 17 15 21 21 H 1.48493 * 109.47172 * 214.98922 * 19 17 15 22 22 H 1.48506 * 109.47049 * 334.98728 * 19 17 15 23 23 N 1.33734 * 121.77478 * 359.74968 * 14 13 12 24 24 C 1.31507 * 120.84289 * 359.97344 * 23 14 13 25 25 H 1.09000 * 109.47587 * 89.96849 * 1 2 3 26 26 H 1.08999 * 109.47238 * 209.97103 * 1 2 3 27 27 H 1.09003 * 109.46681 * 329.96872 * 1 2 3 28 28 H 1.08003 * 125.20054 * 359.97438 * 3 2 1 29 29 H 1.08003 * 126.08813 * 179.97438 * 4 3 2 30 30 H 1.07994 * 119.86891 * 0.32365 * 7 6 2 31 31 H 1.07993 * 119.59289 * 179.97438 * 8 7 6 32 32 H 1.08008 * 119.87639 * 180.02562 * 9 8 7 33 33 H 1.08003 * 120.46493 * 359.97438 * 12 11 10 34 34 H 0.96999 * 120.00049 * 179.97438 * 18 17 15 35 35 H 1.08005 * 120.45968 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2601 1.1120 0.0000 4 6 3.5536 0.7417 0.0006 5 6 3.5994 -0.6739 0.0003 6 6 2.2669 -1.1216 -0.0005 7 6 1.9989 -2.4855 -0.0007 8 6 3.0358 -3.3992 -0.0007 9 6 4.3515 -2.9766 -0.0011 10 6 4.6518 -1.6150 -0.0009 11 6 6.0553 -1.1623 -0.0008 12 6 6.5039 -0.2063 -0.9298 13 7 7.7614 0.1770 -0.8957 14 6 8.6110 -0.3378 -0.0004 15 6 9.9516 0.0946 -0.0002 16 1 10.6243 -0.2323 0.7788 17 6 10.4121 0.9489 -1.0105 18 7 9.5722 1.4438 -1.8809 19 14 12.2266 1.3807 -1.1134 20 1 12.8996 0.4654 -2.0698 21 1 12.3761 2.7822 -1.5807 22 1 12.8464 1.2375 0.2285 23 7 8.2223 -1.2525 0.8945 24 6 6.9792 -1.6803 0.9247 25 1 -0.3634 0.0006 -1.0276 26 1 -0.3634 -0.8902 0.5134 27 1 -0.3633 0.8898 0.5143 28 1 1.9043 2.1317 -0.0004 29 1 4.4054 1.4057 0.0003 30 1 0.9763 -2.8327 -0.0056 31 1 2.8151 -4.4564 -0.0004 32 1 5.1502 -3.7038 -0.0015 33 1 5.8242 0.2102 -1.6586 34 1 9.8910 2.0356 -2.5802 35 1 6.6721 -2.4195 1.6498 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241821852.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:26 Heat of formation + Delta-G solvation = 90.010478 kcal Electronic energy + Delta-G solvation = -20186.545519 eV Core-core repulsion = 17149.287423 eV Total energy + Delta-G solvation = -3037.258097 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.28175 -40.71830 -37.85410 -35.77256 -34.24344 -33.67732 -32.81315 -30.50576 -29.72652 -27.63147 -27.09999 -24.61818 -24.24974 -22.72993 -22.24549 -20.66045 -19.79971 -18.05453 -17.77083 -17.24005 -16.91970 -16.32973 -16.17562 -16.03646 -15.18954 -15.07858 -14.52792 -14.49072 -14.12943 -13.90072 -13.63496 -13.49509 -13.10281 -13.05040 -12.96341 -12.67636 -12.42527 -12.19653 -12.07117 -11.92402 -11.34299 -11.13400 -10.92690 -10.63555 -9.72571 -9.32048 -9.01486 -8.49586 -8.25290 -6.72022 0.04071 0.70369 0.93237 1.06010 1.39774 1.51798 1.56816 1.90805 2.01871 2.19296 2.70102 3.10048 3.85138 3.90351 3.97868 4.00916 4.02075 4.14629 4.25515 4.38899 4.39929 4.51926 4.54603 4.66998 4.75813 4.91277 4.94214 5.00596 5.09961 5.20381 5.30542 5.41443 5.64722 5.74401 5.86415 5.96474 6.01142 6.12442 6.37761 6.49830 6.54827 6.57907 7.14813 8.17804 8.32485 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.030879 B = 0.004165 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.543236 B = 6721.626112 C = 7371.368566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.484 5.484 3 C 0.057 3.943 4 C -0.234 4.234 5 C -0.126 4.126 6 C 0.077 3.923 7 C -0.142 4.142 8 C -0.093 4.093 9 C -0.163 4.163 10 C 0.028 3.972 11 C -0.301 4.301 12 C 0.169 3.831 13 N -0.538 5.538 14 C 0.355 3.645 15 C -0.427 4.427 16 H 0.092 0.908 17 C 0.022 3.978 18 N -0.741 5.741 19 Si 1.003 2.997 20 H -0.260 1.260 21 H -0.260 1.260 22 H -0.254 1.254 23 N -0.618 5.618 24 C 0.171 3.829 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.203 0.797 29 H 0.117 0.883 30 H 0.146 0.854 31 H 0.153 0.847 32 H 0.118 0.882 33 H 0.136 0.864 34 H 0.287 0.713 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.942 -1.921 0.922 17.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.167 5.167 3 C -0.070 4.070 4 C -0.259 4.259 5 C -0.130 4.130 6 C -0.030 4.030 7 C -0.162 4.162 8 C -0.112 4.112 9 C -0.183 4.183 10 C 0.026 3.974 11 C -0.310 4.310 12 C -0.006 4.006 13 N -0.255 5.255 14 C 0.120 3.880 15 C -0.462 4.462 16 H 0.110 0.890 17 C -0.202 4.202 18 N -0.362 5.362 19 Si 0.821 3.179 20 H -0.185 1.185 21 H -0.184 1.184 22 H -0.178 1.178 23 N -0.338 5.338 24 C -0.001 4.001 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.122 0.878 28 H 0.220 0.780 29 H 0.135 0.865 30 H 0.164 0.836 31 H 0.171 0.829 32 H 0.136 0.864 33 H 0.154 0.846 34 H 0.098 0.902 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -16.290 -1.370 0.729 16.364 hybrid contribution 0.031 0.033 -0.136 0.143 sum -16.259 -1.337 0.593 16.324 Atomic orbital electron populations 1.22224 0.74318 1.05770 1.04157 1.44146 1.07207 1.03564 1.61766 1.22259 0.89162 0.92696 1.02874 1.20729 0.97034 0.93865 1.14257 1.18512 0.92657 0.94086 1.07768 1.18479 0.89314 0.89708 1.05497 1.20246 1.00471 0.88291 1.07227 1.20961 0.90911 1.00184 0.99183 1.21144 0.97557 0.93649 1.05943 1.18187 0.89523 0.92696 0.96984 1.19976 0.95294 1.09472 1.06268 1.23286 0.92771 0.90410 0.94086 1.69299 1.02570 1.28175 1.25439 1.20333 0.94857 0.87482 0.85352 1.19674 0.93127 1.23527 1.09837 0.88999 1.27155 1.05671 0.93794 0.93590 1.70214 1.38086 1.18397 1.09497 0.84895 0.74263 0.78612 0.80095 1.18480 1.18395 1.17770 1.68655 1.18415 1.18261 1.28432 1.23199 0.88163 0.94459 0.94284 0.90193 0.89023 0.87759 0.78046 0.86493 0.83649 0.82889 0.86413 0.84638 0.90250 0.82431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 11.07 127.77 1.41 2.33 16 2 N -0.48 -11.51 3.19 -539.16 -1.72 -13.23 16 3 C 0.06 1.46 11.34 83.09 0.94 2.40 16 4 C -0.23 -8.27 10.10 22.26 0.22 -8.04 16 5 C -0.13 -4.71 5.91 -21.15 -0.13 -4.83 16 6 C 0.08 2.31 6.82 38.95 0.27 2.57 16 7 C -0.14 -3.59 9.98 22.45 0.22 -3.37 16 8 C -0.09 -2.48 10.00 22.25 0.22 -2.25 16 9 C -0.16 -5.55 9.54 22.55 0.22 -5.33 16 10 C 0.03 1.14 5.54 -19.84 -0.11 1.03 16 11 C -0.30 -14.33 5.45 -19.66 -0.11 -14.44 16 12 C 0.17 8.81 10.13 85.33 0.86 9.67 16 13 N -0.54 -31.72 7.84 -193.10 -1.51 -33.24 16 14 C 0.35 21.32 7.34 134.80 0.99 22.31 16 15 C -0.43 -24.56 9.33 23.36 0.22 -24.35 16 16 H 0.09 5.08 7.86 -2.91 -0.02 5.06 16 17 C 0.02 1.14 5.49 85.31 0.47 1.61 16 18 N -0.74 -40.14 11.42 21.85 0.25 -39.89 16 19 Si 1.00 38.25 29.56 68.60 2.03 40.28 16 20 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 21 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 22 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 23 N -0.62 -34.88 10.33 -193.10 -2.00 -36.88 16 24 C 0.17 8.42 10.86 85.33 0.93 9.34 16 25 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.09 0.90 8.13 -2.39 -0.02 0.88 16 27 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.20 3.39 8.06 -2.91 -0.02 3.37 16 29 H 0.12 4.58 7.74 -2.91 -0.02 4.56 16 30 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 31 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 32 H 0.12 3.86 8.05 -2.91 -0.02 3.84 16 33 H 0.14 6.62 7.94 -2.91 -0.02 6.60 16 34 H 0.29 13.75 8.29 -92.71 -0.77 12.98 16 35 H 0.16 6.59 8.06 -2.91 -0.02 6.56 16 Total: -1.00 -74.31 309.11 4.79 -69.52 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 1.11 Total: 24.77 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 6.63 Total: -11.34 kcal Atomic # 7 Polarization: -118.25 SS G_CDS: -4.98 Total: -123.24 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -74.31 4.79 -69.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241821852.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.533 kcal (2) G-P(sol) polarization free energy of solvation -74.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds