Wall clock time and date at job start Tue Mar 31 2020 01:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38867 * 119.99459 * 2 1 4 4 C 1.39266 * 119.57331 * 359.97438 * 3 2 1 5 5 C 1.38020 * 119.22652 * 180.02562 * 4 3 2 6 6 C 1.40027 * 118.40276 * 0.02562 * 5 4 3 7 7 C 1.48252 * 120.46460 * 180.02562 * 6 5 4 8 8 C 1.39855 * 119.53591 * 359.72833 * 7 6 5 9 9 C 1.37684 * 121.16986 * 180.28538 * 8 7 6 10 10 C 1.39605 * 120.18890 * 359.97438 * 9 8 7 11 11 C 1.43202 * 120.45437 * 179.97438 * 10 9 8 12 12 N 9.57902 * 150.24727 * 179.67115 * 3 1 2 13 13 C 1.46555 * 119.09229 * 0.02562 * 10 9 8 14 14 C 1.40844 * 120.55091 * 179.97438 * 13 10 9 15 15 H 1.08000 * 120.00098 * 335.82897 * 14 13 10 16 16 C 1.40229 * 119.99844 * 155.83169 * 14 13 10 17 17 N 1.30664 * 119.99847 * 341.86027 * 16 14 13 18 18 Si 1.86800 * 120.00211 * 161.86050 * 16 14 13 19 19 H 1.48500 * 109.47102 * 89.99470 * 18 16 14 20 20 H 1.48500 * 109.47375 * 209.99980 * 18 16 14 21 21 H 1.48497 * 109.46772 * 329.99785 * 18 16 14 22 22 C 1.38645 * 119.54279 * 180.02562 * 7 6 5 23 23 C 1.39234 * 119.08203 * 0.27152 * 6 5 4 24 24 N 1.31798 * 120.67450 * 359.43021 * 23 6 5 25 25 H 1.08996 * 109.47275 * 299.99617 * 1 2 3 26 26 H 1.08994 * 109.47293 * 60.00518 * 1 2 3 27 27 H 1.09000 * 109.46372 * 180.02562 * 1 2 3 28 28 H 0.96998 * 120.00372 * 180.02562 * 2 1 3 29 29 H 1.08004 * 120.38298 * 0.02562 * 4 3 2 30 30 H 1.08006 * 120.79666 * 180.02562 * 5 4 3 31 31 H 1.07994 * 119.41444 * 0.25230 * 8 7 6 32 32 H 1.07995 * 119.90961 * 180.02562 * 9 8 7 33 33 H 0.97001 * 119.99850 * 185.04771 * 17 16 14 34 34 H 1.07999 * 120.13487 * 359.74037 * 22 7 6 35 35 H 1.07994 * 119.66465 * 179.70418 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1592 1.2027 0.0000 4 6 1.4538 2.4035 -0.0005 5 6 2.1510 3.5946 -0.0011 6 6 3.5505 3.5473 -0.0016 7 6 4.3450 4.7989 -0.0016 8 6 3.6871 6.0331 -0.0069 9 6 4.3915 7.2161 -0.0129 10 6 5.7874 7.2019 -0.0134 11 6 6.5257 8.4290 -0.0202 12 7 7.1114 9.4022 -0.0273 13 6 6.4870 5.9141 -0.0079 14 6 7.8945 5.8640 -0.0088 15 1 8.4643 6.6958 -0.3960 16 6 8.5561 4.7341 0.4932 17 7 7.9218 3.8973 1.2708 18 14 10.3444 4.4252 0.0503 19 1 11.2228 5.0784 1.0538 20 1 10.6064 2.9636 0.0396 21 1 10.6255 4.9883 -1.2947 22 6 5.7297 4.7298 -0.0027 23 6 4.1857 2.3083 -0.0073 24 7 3.4838 1.1928 -0.0009 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.9501 -0.8400 -0.0004 29 1 0.3738 2.4026 -0.0005 30 1 1.6297 4.5405 -0.0011 31 1 2.6074 6.0586 -0.0067 32 1 3.8626 8.1577 -0.0165 33 1 8.3981 3.1563 1.6770 34 1 6.2246 3.7698 0.0007 35 1 5.2646 2.2608 -0.0126 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242069363.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:32 Heat of formation + Delta-G solvation = 79.749436 kcal Electronic energy + Delta-G solvation = -19830.541699 eV Core-core repulsion = 16792.838650 eV Total energy + Delta-G solvation = -3037.703049 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.91783 -37.73613 -35.77959 -34.99104 -34.13165 -32.33322 -31.00163 -29.96334 -28.26323 -26.01665 -25.87422 -23.29258 -22.80188 -20.87826 -20.65367 -17.86478 -17.60536 -17.04246 -16.35518 -15.70119 -14.92088 -14.62138 -14.45753 -14.28818 -13.67090 -13.38918 -13.17683 -12.90998 -12.73613 -12.65592 -12.52921 -12.23844 -11.75275 -11.54325 -11.51602 -11.29053 -11.18437 -11.08897 -10.66824 -10.09518 -9.95636 -9.80206 -9.49875 -9.39574 -8.99084 -8.10332 -7.75056 -7.16950 -6.79251 -4.71518 1.35670 1.69769 2.46831 2.67499 2.93555 2.97613 3.09384 3.28862 3.70003 3.93950 4.03290 4.45923 4.52796 4.89897 5.03054 5.22681 5.28992 5.40784 5.46407 5.46681 5.50412 5.54291 5.64816 5.94835 6.16886 6.28003 6.38710 6.55947 6.71135 6.82859 6.89207 7.03451 7.19420 7.25753 7.48459 7.65878 7.68852 7.78494 7.88410 8.20779 8.43742 8.50183 8.55164 8.85047 9.75859 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.004953 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.679698 B = 5651.244146 C = 7160.386470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.738 5.738 3 C 0.381 3.619 4 C -0.239 4.239 5 C -0.033 4.033 6 C -0.127 4.127 7 C -0.003 4.003 8 C -0.242 4.242 9 C -0.026 4.026 10 C -0.190 4.190 11 C 0.300 3.700 12 N -0.513 5.513 13 C 0.151 3.849 14 C -0.429 4.429 15 H 0.087 0.913 16 C 0.077 3.923 17 N -0.764 5.764 18 Si 0.914 3.086 19 H -0.265 1.265 20 H -0.270 1.270 21 H -0.255 1.255 22 C -0.151 4.151 23 C 0.156 3.844 24 N -0.543 5.543 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.402 0.598 29 H 0.125 0.875 30 H 0.134 0.866 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.291 0.709 34 H 0.131 0.869 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.978 -9.744 -1.403 14.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.372 5.372 3 C 0.147 3.853 4 C -0.264 4.264 5 C -0.059 4.059 6 C -0.131 4.131 7 C -0.004 4.004 8 C -0.261 4.261 9 C -0.047 4.047 10 C -0.196 4.196 11 C -0.009 4.009 12 N -0.192 5.192 13 C 0.145 3.855 14 C -0.457 4.457 15 H 0.105 0.895 16 C -0.146 4.146 17 N -0.386 5.386 18 Si 0.737 3.263 19 H -0.190 1.190 20 H -0.194 1.194 21 H -0.179 1.179 22 C -0.170 4.170 23 C -0.002 4.002 24 N -0.260 5.260 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.236 0.764 29 H 0.143 0.857 30 H 0.152 0.848 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.149 0.851 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.855 -9.265 -1.309 13.590 hybrid contribution 0.211 -0.102 0.031 0.237 sum -9.644 -9.367 -1.277 13.505 Atomic orbital electron populations 1.21501 0.79550 1.02272 1.01167 1.44092 1.05353 1.05332 1.82403 1.18389 0.88559 0.86153 0.92248 1.21230 1.00224 0.91839 1.13095 1.21459 0.93486 0.97711 0.93235 1.19799 0.93300 0.94698 1.05335 1.18319 0.92917 0.90293 0.98905 1.20085 0.97476 0.91340 1.17237 1.20353 0.91764 0.96671 0.95876 1.16964 0.91030 0.86465 1.25128 1.25822 0.91831 0.92142 0.91089 1.81013 1.10012 1.12842 1.15345 1.18313 0.92541 0.88621 0.85989 1.19778 0.91717 1.01181 1.33002 0.89537 1.26105 1.01756 0.94006 0.92727 1.69683 1.38806 1.11595 1.18495 0.86176 0.80614 0.78697 0.80861 1.18993 1.19446 1.17882 1.21365 0.90980 0.98664 1.05989 1.22756 0.99931 0.85960 0.91521 1.67115 1.05806 1.32395 1.20664 0.92919 0.92922 0.90799 0.76354 0.85738 0.84790 0.88365 0.88301 0.89712 0.85136 0.81948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.76 9.91 59.85 0.59 1.36 16 2 N -0.74 -8.39 5.88 -67.19 -0.40 -8.79 16 3 C 0.38 5.72 7.64 -155.05 -1.19 4.54 16 4 C -0.24 -3.36 9.31 -39.28 -0.37 -3.73 16 5 C -0.03 -0.52 9.51 -38.99 -0.37 -0.89 16 6 C -0.13 -2.32 5.89 -104.74 -0.62 -2.93 16 7 C 0.00 -0.05 5.86 -105.03 -0.62 -0.67 16 8 C -0.24 -4.67 9.38 -39.18 -0.37 -5.04 16 9 C -0.03 -0.52 9.74 -39.27 -0.38 -0.91 16 10 C -0.19 -4.35 5.95 -104.11 -0.62 -4.96 16 11 C 0.30 7.09 14.28 -22.47 -0.32 6.77 16 12 N -0.51 -12.43 18.54 41.84 0.78 -11.65 16 13 C 0.15 3.62 5.74 -104.68 -0.60 3.02 16 14 C -0.43 -10.43 8.58 -37.85 -0.32 -10.75 16 15 H 0.09 2.14 7.37 -52.49 -0.39 1.75 16 16 C 0.08 1.73 5.15 -17.30 -0.09 1.64 16 17 N -0.76 -17.23 10.97 55.56 0.61 -16.62 16 18 Si 0.91 17.16 29.60 -169.99 -5.03 12.12 16 19 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 20 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 21 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 22 C -0.15 -3.39 8.07 -38.55 -0.31 -3.70 16 23 C 0.16 2.84 10.58 -17.20 -0.18 2.66 16 24 N -0.54 -9.41 10.38 -12.16 -0.13 -9.54 16 25 H 0.05 0.39 7.92 -51.93 -0.41 -0.02 16 26 H 0.05 0.38 7.92 -51.93 -0.41 -0.03 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.40 4.18 8.95 -40.82 -0.37 3.82 16 29 H 0.12 1.38 6.68 -52.48 -0.35 1.03 16 30 H 0.13 1.82 6.25 -52.48 -0.33 1.49 16 31 H 0.10 1.62 6.15 -52.49 -0.32 1.30 16 32 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.29 5.94 8.30 -40.82 -0.34 5.60 16 34 H 0.13 2.93 4.26 -52.49 -0.22 2.71 16 35 H 0.16 2.99 6.16 -52.49 -0.32 2.67 16 LS Contribution 308.41 15.07 4.65 4.65 Total: -1.00 -26.98 308.41 -8.38 -35.36 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -3.10 Total: 8.07 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -5.76 Total: -13.60 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.86 Total: -46.60 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.12 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -26.98 -8.38 -35.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242069363.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.106 kcal (2) G-P(sol) polarization free energy of solvation -26.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds