Wall clock time and date at job start Tue Mar 31 2020 01:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38867 * 119.99459 * 2 1 4 4 C 1.39266 * 119.57331 * 359.97438 * 3 2 1 5 5 C 1.38020 * 119.22652 * 180.02562 * 4 3 2 6 6 C 1.40027 * 118.40276 * 0.02562 * 5 4 3 7 7 C 1.48252 * 120.46460 * 180.02562 * 6 5 4 8 8 C 1.39855 * 119.53591 * 359.72833 * 7 6 5 9 9 C 1.37684 * 121.16986 * 180.28538 * 8 7 6 10 10 C 1.39605 * 120.18890 * 359.97438 * 9 8 7 11 11 C 1.43202 * 120.45437 * 179.97438 * 10 9 8 12 12 N 9.57902 * 150.24727 * 179.67115 * 3 1 2 13 13 C 1.46555 * 119.09229 * 0.02562 * 10 9 8 14 14 C 1.40844 * 120.55091 * 179.97438 * 13 10 9 15 15 H 1.08000 * 120.00098 * 335.82897 * 14 13 10 16 16 C 1.40229 * 119.99844 * 155.83169 * 14 13 10 17 17 N 1.30664 * 119.99847 * 341.86027 * 16 14 13 18 18 Si 1.86800 * 120.00211 * 161.86050 * 16 14 13 19 19 H 1.48500 * 109.47102 * 89.99470 * 18 16 14 20 20 H 1.48500 * 109.47375 * 209.99980 * 18 16 14 21 21 H 1.48497 * 109.46772 * 329.99785 * 18 16 14 22 22 C 1.38645 * 119.54279 * 180.02562 * 7 6 5 23 23 C 1.39234 * 119.08203 * 0.27152 * 6 5 4 24 24 N 1.31798 * 120.67450 * 359.43021 * 23 6 5 25 25 H 1.08996 * 109.47275 * 299.99617 * 1 2 3 26 26 H 1.08994 * 109.47293 * 60.00518 * 1 2 3 27 27 H 1.09000 * 109.46372 * 180.02562 * 1 2 3 28 28 H 0.96998 * 120.00372 * 180.02562 * 2 1 3 29 29 H 1.08004 * 120.38298 * 0.02562 * 4 3 2 30 30 H 1.08006 * 120.79666 * 180.02562 * 5 4 3 31 31 H 1.07994 * 119.41444 * 0.25230 * 8 7 6 32 32 H 1.07995 * 119.90961 * 180.02562 * 9 8 7 33 33 H 0.97001 * 119.99850 * 185.04771 * 17 16 14 34 34 H 1.07999 * 120.13487 * 359.74037 * 22 7 6 35 35 H 1.07994 * 119.66465 * 179.70418 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1592 1.2027 0.0000 4 6 1.4538 2.4035 -0.0005 5 6 2.1510 3.5946 -0.0011 6 6 3.5505 3.5473 -0.0016 7 6 4.3450 4.7989 -0.0016 8 6 3.6871 6.0331 -0.0069 9 6 4.3915 7.2161 -0.0129 10 6 5.7874 7.2019 -0.0134 11 6 6.5257 8.4290 -0.0202 12 7 7.1114 9.4022 -0.0273 13 6 6.4870 5.9141 -0.0079 14 6 7.8945 5.8640 -0.0088 15 1 8.4643 6.6958 -0.3960 16 6 8.5561 4.7341 0.4932 17 7 7.9218 3.8973 1.2708 18 14 10.3444 4.4252 0.0503 19 1 11.2228 5.0784 1.0538 20 1 10.6064 2.9636 0.0396 21 1 10.6255 4.9883 -1.2947 22 6 5.7297 4.7298 -0.0027 23 6 4.1857 2.3083 -0.0073 24 7 3.4838 1.1928 -0.0009 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.9501 -0.8400 -0.0004 29 1 0.3738 2.4026 -0.0005 30 1 1.6297 4.5405 -0.0011 31 1 2.6074 6.0586 -0.0067 32 1 3.8626 8.1577 -0.0165 33 1 8.3981 3.1563 1.6770 34 1 6.2246 3.7698 0.0007 35 1 5.2646 2.2608 -0.0126 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242069363.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:30 Heat of formation + Delta-G solvation = 65.972198 kcal Electronic energy + Delta-G solvation = -19831.139125 eV Core-core repulsion = 16792.838650 eV Total energy + Delta-G solvation = -3038.300475 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.15438 -39.32624 -37.16785 -36.52100 -35.74094 -33.68280 -32.33534 -31.63000 -29.54361 -27.57305 -26.97947 -24.61535 -24.15548 -22.44660 -22.06704 -19.50786 -18.89983 -18.51301 -17.54618 -17.26871 -16.37523 -15.70276 -15.57753 -15.51312 -15.10613 -14.89891 -14.52387 -14.46506 -14.25998 -14.08303 -13.89432 -13.42178 -13.28326 -13.03382 -12.95328 -12.84796 -12.76090 -12.64255 -12.14329 -11.69488 -11.42970 -11.32686 -11.02635 -10.59655 -10.27125 -9.49026 -9.42137 -8.82389 -8.14863 -6.49594 -0.09157 0.48206 0.94421 1.06948 1.37091 1.48104 1.55228 2.07790 2.14160 2.36023 2.42596 2.69209 3.13548 3.66474 3.76108 3.78164 4.05805 4.16436 4.25363 4.34322 4.47508 4.57050 4.74071 4.84484 4.86559 4.98464 4.99525 5.12182 5.21412 5.31208 5.34520 5.59794 5.66740 5.85941 5.99585 6.15156 6.19661 6.22142 6.49420 6.66810 6.70077 6.83876 7.01752 7.31280 8.11168 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.004953 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.679698 B = 5651.244146 C = 7160.386470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.731 5.731 3 C 0.378 3.622 4 C -0.232 4.232 5 C -0.026 4.026 6 C -0.158 4.158 7 C 0.006 3.994 8 C -0.233 4.233 9 C -0.024 4.024 10 C -0.215 4.215 11 C 0.306 3.694 12 N -0.535 5.535 13 C 0.131 3.869 14 C -0.468 4.468 15 H 0.069 0.931 16 C 0.048 3.952 17 N -0.785 5.785 18 Si 0.973 3.027 19 H -0.264 1.264 20 H -0.254 1.254 21 H -0.262 1.262 22 C -0.177 4.177 23 C 0.146 3.854 24 N -0.568 5.568 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.406 0.594 29 H 0.162 0.838 30 H 0.160 0.840 31 H 0.137 0.863 32 H 0.128 0.872 33 H 0.300 0.700 34 H 0.122 0.878 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.089 -11.062 -1.445 17.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.363 5.363 3 C 0.141 3.859 4 C -0.257 4.257 5 C -0.051 4.051 6 C -0.162 4.162 7 C 0.005 3.995 8 C -0.252 4.252 9 C -0.044 4.044 10 C -0.221 4.221 11 C -0.003 4.003 12 N -0.215 5.215 13 C 0.126 3.874 14 C -0.495 4.495 15 H 0.087 0.913 16 C -0.173 4.173 17 N -0.408 5.408 18 Si 0.794 3.206 19 H -0.189 1.189 20 H -0.178 1.178 21 H -0.186 1.186 22 C -0.196 4.196 23 C -0.011 4.011 24 N -0.286 5.286 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.120 0.880 28 H 0.241 0.759 29 H 0.180 0.820 30 H 0.177 0.823 31 H 0.155 0.845 32 H 0.146 0.854 33 H 0.111 0.889 34 H 0.139 0.861 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.010 -10.610 -1.346 16.842 hybrid contribution 0.880 0.126 0.047 0.890 sum -12.130 -10.484 -1.300 16.086 Atomic orbital electron populations 1.21819 0.76925 1.04557 1.01893 1.44391 1.06977 1.04343 1.80602 1.18843 0.88096 0.88036 0.90893 1.21579 1.01954 0.90696 1.11428 1.21730 0.92142 0.99479 0.91723 1.19711 0.94604 0.93433 1.08497 1.18621 0.92391 0.92044 0.96486 1.20521 0.99368 0.90315 1.14979 1.20693 0.90664 0.98437 0.94617 1.17226 0.92382 0.85740 1.26769 1.26055 0.91499 0.92140 0.90564 1.80984 1.10410 1.13590 1.16509 1.18606 0.92898 0.89657 0.86283 1.19837 0.92304 1.01997 1.35371 0.91304 1.26705 1.05100 0.93328 0.92186 1.69698 1.40236 1.12016 1.18847 0.85308 0.76159 0.79209 0.79969 1.18922 1.17776 1.18553 1.21328 0.92189 0.97833 1.08293 1.22553 0.99519 0.86740 0.92272 1.67101 1.07310 1.32009 1.22165 0.92106 0.92004 0.88019 0.75939 0.82031 0.82298 0.84510 0.85441 0.88885 0.86074 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.98 9.91 127.77 1.27 2.25 16 2 N -0.73 -14.24 5.88 -366.50 -2.16 -16.40 16 3 C 0.38 10.38 7.64 133.12 1.02 11.40 16 4 C -0.23 -5.61 9.31 22.47 0.21 -5.40 16 5 C -0.03 -0.71 9.51 22.65 0.22 -0.49 16 6 C -0.16 -5.60 5.89 -19.94 -0.12 -5.72 16 7 C 0.01 0.26 5.86 -20.13 -0.12 0.14 16 8 C -0.23 -8.48 9.38 22.53 0.21 -8.27 16 9 C -0.02 -0.92 9.74 22.47 0.22 -0.71 16 10 C -0.21 -10.03 5.95 -19.53 -0.12 -10.15 16 11 C 0.31 14.78 14.28 88.33 1.26 16.04 16 12 N -0.53 -26.51 18.54 19.00 0.35 -26.16 16 13 C 0.13 6.55 5.74 -19.90 -0.11 6.43 16 14 C -0.47 -23.99 8.58 23.39 0.20 -23.79 16 15 H 0.07 3.64 7.37 -2.91 -0.02 3.62 16 16 C 0.05 2.23 5.15 85.35 0.44 2.67 16 17 N -0.79 -36.91 10.97 21.87 0.24 -36.67 16 18 Si 0.97 36.30 29.60 68.60 2.03 38.33 16 19 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 20 H -0.25 -8.73 7.11 99.48 0.71 -8.02 16 21 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 22 C -0.18 -8.27 8.07 22.94 0.19 -8.09 16 23 C 0.15 5.40 10.58 84.94 0.90 6.30 16 24 N -0.57 -19.31 10.38 -192.39 -2.00 -21.30 16 25 H 0.06 0.61 7.92 -2.39 -0.02 0.59 16 26 H 0.06 0.60 7.92 -2.39 -0.02 0.58 16 27 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.41 7.38 8.95 -92.71 -0.83 6.55 16 29 H 0.16 2.67 6.68 -2.91 -0.02 2.65 16 30 H 0.16 3.52 6.25 -2.91 -0.02 3.50 16 31 H 0.14 3.89 6.15 -2.91 -0.02 3.87 16 32 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 33 H 0.30 12.60 8.30 -92.71 -0.77 11.83 16 34 H 0.12 5.79 4.26 -2.91 -0.01 5.78 16 35 H 0.15 5.69 6.16 -2.91 -0.02 5.67 16 Total: -1.00 -60.93 308.41 4.46 -56.47 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.33 Total: 23.11 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: 5.66 Total: -17.38 kcal Atomic # 7 Polarization: -96.97 SS G_CDS: -3.56 Total: -100.53 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 2.03 Total: 38.33 kcal Total: -60.93 4.46 -56.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242069363.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.439 kcal (2) G-P(sol) polarization free energy of solvation -60.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds