Wall clock time and date at job start Tue Mar 31 2020 01:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.38723 * 120.00399 * 2 1 4 4 C 1.39359 * 119.53800 * 359.97438 * 3 2 1 5 5 C 1.36932 * 119.37714 * 180.02562 * 4 3 2 6 6 C 1.40247 * 118.50070 * 359.97438 * 5 4 3 7 7 C 1.47899 * 120.47218 * 180.02562 * 6 5 4 8 8 C 1.40042 * 119.50411 * 0.02562 * 7 6 5 9 9 C 1.35962 * 121.18525 * 179.97438 * 8 7 6 10 10 C 1.41065 * 120.11674 * 0.02562 * 9 8 7 11 11 C 1.40400 * 120.48782 * 179.97438 * 10 9 8 12 12 H 1.08005 * 120.00183 * 208.77400 * 11 10 9 13 13 C 1.40269 * 119.99988 * 28.76914 * 11 10 9 14 14 N 1.30656 * 120.00227 * 197.55772 * 13 11 10 15 15 Si 1.86796 * 119.99787 * 17.56349 * 13 11 10 16 16 H 1.48501 * 109.47213 * 269.99567 * 15 13 11 17 17 H 1.48496 * 109.47415 * 29.99780 * 15 13 11 18 18 H 1.48506 * 109.47227 * 149.99811 * 15 13 11 19 19 C 1.46661 * 119.03081 * 0.22725 * 10 9 8 20 20 C 1.43199 * 120.56352 * 179.72603 * 19 10 9 21 21 N 9.55049 * 142.42504 * 359.81397 * 2 1 3 22 22 C 1.39052 * 118.87577 * 359.49688 * 19 10 9 23 23 C 1.39527 * 119.05201 * 0.27458 * 6 5 4 24 24 N 1.31755 * 120.51725 * 359.43138 * 23 6 5 25 25 H 1.09002 * 109.47570 * 300.00322 * 1 2 3 26 26 H 1.09001 * 109.47228 * 59.99961 * 1 2 3 27 27 H 1.09005 * 109.47390 * 179.97438 * 1 2 3 28 28 H 0.97008 * 119.99855 * 180.02562 * 2 1 3 29 29 H 1.08002 * 120.31111 * 0.02562 * 4 3 2 30 30 H 1.07997 * 120.74857 * 180.02562 * 5 4 3 31 31 H 1.07997 * 119.41012 * 0.02562 * 8 7 6 32 32 H 1.08001 * 119.94571 * 179.97438 * 9 8 7 33 33 H 0.96997 * 119.99916 * 355.45194 * 14 13 11 34 34 H 1.07993 * 120.10292 * 180.22353 * 22 19 10 35 35 H 1.07998 * 119.73844 * 179.70250 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1586 1.2013 0.0000 4 6 1.4522 2.4026 -0.0005 5 6 2.1403 3.5865 -0.0011 6 6 3.5422 3.5458 -0.0005 7 6 4.3289 4.7982 -0.0005 8 6 3.6637 6.0305 -0.0005 9 6 4.3528 7.2025 0.0001 10 6 5.7635 7.1942 0.0001 11 6 6.4829 8.3999 0.0001 12 1 7.4637 8.4435 -0.4501 13 6 5.9279 9.5478 0.5848 14 7 6.4131 10.7266 0.2983 15 14 4.4952 9.3911 1.7730 16 1 3.2174 9.4595 1.0196 17 1 4.5816 8.0901 2.4839 18 1 4.5475 10.4991 2.7605 19 6 6.4676 5.9077 -0.0055 20 6 7.8988 5.8610 -0.0116 21 7 9.0342 5.8238 -0.0189 22 6 5.7219 4.7340 -0.0001 23 6 4.1840 2.3069 -0.0053 24 7 3.4840 1.1907 0.0010 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.9500 -0.8401 -0.0004 29 1 0.3722 2.3998 -0.0005 30 1 1.6153 4.5303 -0.0011 31 1 2.5839 6.0503 -0.0001 32 1 3.8194 8.1416 -0.0004 33 1 7.1981 10.8038 -0.2662 34 1 6.2200 3.7758 -0.0004 35 1 5.2631 2.2626 -0.0097 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242069972.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:40 Heat of formation + Delta-G solvation = 77.006026 kcal Electronic energy + Delta-G solvation = -19714.775795 eV Core-core repulsion = 16676.953783 eV Total energy + Delta-G solvation = -3037.822012 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.99772 -38.07869 -35.85388 -35.22957 -34.26997 -32.46544 -31.30563 -30.27824 -28.93326 -26.56706 -24.75643 -23.75816 -22.13493 -21.72527 -20.85239 -18.57311 -17.70001 -17.55524 -16.46992 -15.27903 -14.87037 -14.71119 -14.65947 -14.34636 -14.15905 -13.80415 -13.29166 -13.09116 -13.02918 -12.82962 -12.62381 -12.29878 -12.03097 -11.78831 -11.73357 -11.53367 -11.11510 -10.76372 -10.60396 -10.21647 -9.99064 -9.78668 -9.52602 -9.38335 -9.06294 -8.32096 -8.04652 -7.78378 -7.05541 -4.91923 1.39195 1.65529 1.94312 2.59052 2.98746 3.15450 3.27502 3.33859 3.70376 3.73357 3.88124 4.28354 4.44920 4.82566 4.96252 5.11716 5.15495 5.18798 5.26334 5.36856 5.46036 5.50913 5.59018 5.64904 5.93519 6.05720 6.22522 6.41317 6.47358 6.57081 6.76225 6.91757 7.04249 7.16017 7.21119 7.30087 7.47678 7.53872 7.65401 7.92023 8.02900 8.26374 8.44558 8.62511 9.51479 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023692 B = 0.004363 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.534425 B = 6415.833196 C = 7427.938935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.739 5.739 3 C 0.365 3.635 4 C -0.223 4.223 5 C -0.057 4.057 6 C -0.088 4.088 7 C -0.192 4.192 8 C -0.030 4.030 9 C -0.241 4.241 10 C 0.132 3.868 11 C -0.464 4.464 12 H 0.085 0.915 13 C 0.039 3.961 14 N -0.775 5.775 15 Si 1.073 2.927 16 H -0.269 1.269 17 H -0.254 1.254 18 H -0.284 1.284 19 C -0.173 4.173 20 C 0.296 3.704 21 N -0.497 5.497 22 C 0.004 3.996 23 C 0.121 3.879 24 N -0.536 5.536 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.401 0.599 29 H 0.123 0.877 30 H 0.131 0.869 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.295 0.705 34 H 0.108 0.892 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.556 -11.465 0.620 17.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.374 5.374 3 C 0.131 3.869 4 C -0.247 4.247 5 C -0.082 4.082 6 C -0.092 4.092 7 C -0.194 4.194 8 C -0.049 4.049 9 C -0.259 4.259 10 C 0.126 3.874 11 C -0.491 4.491 12 H 0.103 0.897 13 C -0.186 4.186 14 N -0.394 5.394 15 Si 0.897 3.103 16 H -0.195 1.195 17 H -0.178 1.178 18 H -0.211 1.211 19 C -0.179 4.179 20 C -0.014 4.014 21 N -0.176 5.176 22 C -0.017 4.017 23 C -0.036 4.036 24 N -0.252 5.252 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.235 0.765 29 H 0.141 0.859 30 H 0.149 0.851 31 H 0.121 0.879 32 H 0.133 0.867 33 H 0.107 0.893 34 H 0.126 0.874 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -12.526 -11.290 1.465 16.927 hybrid contribution 0.520 -0.208 -1.159 1.287 sum -12.005 -11.498 0.307 16.626 Atomic orbital electron populations 1.21486 0.79616 1.02218 1.01104 1.43997 1.05276 1.05276 1.82816 1.18302 0.88398 0.86178 0.94069 1.20985 1.00253 0.91921 1.11589 1.21128 0.93481 0.97745 0.95865 1.19563 0.93100 0.93996 1.02560 1.17576 0.91540 0.90741 1.19529 1.20431 0.98095 0.91785 0.94558 1.20738 0.93574 0.97467 1.14161 1.18546 0.91345 0.90663 0.86868 1.20946 1.04407 0.94408 1.29307 0.89668 1.27737 1.02651 0.90748 0.97422 1.70452 1.17838 1.25479 1.25636 0.83599 0.73497 0.77707 0.75481 1.19510 1.17781 1.21109 1.16731 0.83360 0.93982 1.23811 1.25688 0.92656 0.91611 0.91481 1.81052 1.12560 1.09630 1.14353 1.20679 0.92624 0.95436 0.92995 1.22503 0.99273 0.86190 0.95679 1.67043 1.05961 1.32280 1.19949 0.92983 0.93001 0.90856 0.76478 0.85867 0.85112 0.87857 0.86663 0.89331 0.87435 0.82972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.73 9.91 59.84 0.59 1.32 16 2 N -0.74 -7.93 5.87 -67.19 -0.39 -8.33 16 3 C 0.36 5.15 7.64 -155.09 -1.19 3.96 16 4 C -0.22 -2.95 9.26 -39.64 -0.37 -3.31 16 5 C -0.06 -0.81 9.46 -39.30 -0.37 -1.19 16 6 C -0.09 -1.44 5.90 -104.71 -0.62 -2.05 16 7 C -0.19 -3.47 5.88 -104.81 -0.62 -4.09 16 8 C -0.03 -0.54 9.31 -39.72 -0.37 -0.91 16 9 C -0.24 -4.90 7.20 -39.33 -0.28 -5.18 16 10 C 0.13 2.97 5.30 -104.61 -0.55 2.42 16 11 C -0.46 -11.24 8.90 -38.01 -0.34 -11.58 16 12 H 0.09 2.22 7.61 -52.48 -0.40 1.82 16 13 C 0.04 0.91 5.42 -17.29 -0.09 0.82 16 14 N -0.78 -18.65 13.64 55.56 0.76 -17.89 16 15 Si 1.07 21.07 24.90 -169.99 -4.23 16.84 16 16 H -0.27 -4.83 6.44 56.52 0.36 -4.46 16 17 H -0.25 -4.93 7.02 56.52 0.40 -4.53 16 18 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 19 C -0.17 -3.75 5.93 -104.27 -0.62 -4.37 16 20 C 0.30 6.73 14.34 -22.47 -0.32 6.41 16 21 N -0.50 -11.77 18.54 41.84 0.78 -10.99 16 22 C 0.00 0.07 9.13 -38.83 -0.35 -0.29 16 23 C 0.12 1.93 10.59 -17.10 -0.18 1.75 16 24 N -0.54 -8.54 10.39 -12.09 -0.13 -8.67 16 25 H 0.05 0.36 7.91 -51.93 -0.41 -0.05 16 26 H 0.05 0.36 7.91 -51.93 -0.41 -0.05 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.40 3.92 8.95 -40.82 -0.37 3.55 16 29 H 0.12 1.30 6.67 -52.49 -0.35 0.95 16 30 H 0.13 1.64 6.24 -52.49 -0.33 1.31 16 31 H 0.10 1.56 6.14 -52.49 -0.32 1.24 16 32 H 0.12 2.27 4.39 -52.49 -0.23 2.04 16 33 H 0.29 6.95 8.72 -40.82 -0.36 6.59 16 34 H 0.11 1.79 6.15 -52.49 -0.32 1.46 16 35 H 0.15 2.24 6.16 -52.49 -0.32 1.92 16 LS Contribution 303.09 15.07 4.57 4.57 Total: -1.00 -26.74 303.09 -7.41 -34.15 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -3.08 Total: 6.60 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -5.68 Total: -16.28 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 1.01 Total: -45.88 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.23 Total: 16.84 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.74 -7.41 -34.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242069972.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.161 kcal (2) G-P(sol) polarization free energy of solvation -26.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds