Wall clock time and date at job start Tue Mar 31 2020 01:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.38723 * 120.00399 * 2 1 4 4 C 1.39359 * 119.53800 * 359.97438 * 3 2 1 5 5 C 1.36932 * 119.37714 * 180.02562 * 4 3 2 6 6 C 1.40247 * 118.50070 * 359.97438 * 5 4 3 7 7 C 1.47899 * 120.47218 * 180.02562 * 6 5 4 8 8 C 1.40042 * 119.50411 * 0.02562 * 7 6 5 9 9 C 1.35962 * 121.18525 * 179.97438 * 8 7 6 10 10 C 1.41065 * 120.11674 * 0.02562 * 9 8 7 11 11 C 1.40400 * 120.48782 * 179.97438 * 10 9 8 12 12 H 1.08005 * 120.00183 * 208.77400 * 11 10 9 13 13 C 1.40269 * 119.99988 * 28.76914 * 11 10 9 14 14 N 1.30656 * 120.00227 * 197.55772 * 13 11 10 15 15 Si 1.86796 * 119.99787 * 17.56349 * 13 11 10 16 16 H 1.48501 * 109.47213 * 269.99567 * 15 13 11 17 17 H 1.48496 * 109.47415 * 29.99780 * 15 13 11 18 18 H 1.48506 * 109.47227 * 149.99811 * 15 13 11 19 19 C 1.46661 * 119.03081 * 0.22725 * 10 9 8 20 20 C 1.43199 * 120.56352 * 179.72603 * 19 10 9 21 21 N 9.55049 * 142.42504 * 359.81397 * 2 1 3 22 22 C 1.39052 * 118.87577 * 359.49688 * 19 10 9 23 23 C 1.39527 * 119.05201 * 0.27458 * 6 5 4 24 24 N 1.31755 * 120.51725 * 359.43138 * 23 6 5 25 25 H 1.09002 * 109.47570 * 300.00322 * 1 2 3 26 26 H 1.09001 * 109.47228 * 59.99961 * 1 2 3 27 27 H 1.09005 * 109.47390 * 179.97438 * 1 2 3 28 28 H 0.97008 * 119.99855 * 180.02562 * 2 1 3 29 29 H 1.08002 * 120.31111 * 0.02562 * 4 3 2 30 30 H 1.07997 * 120.74857 * 180.02562 * 5 4 3 31 31 H 1.07997 * 119.41012 * 0.02562 * 8 7 6 32 32 H 1.08001 * 119.94571 * 179.97438 * 9 8 7 33 33 H 0.96997 * 119.99916 * 355.45194 * 14 13 11 34 34 H 1.07993 * 120.10292 * 180.22353 * 22 19 10 35 35 H 1.07998 * 119.73844 * 179.70250 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1586 1.2013 0.0000 4 6 1.4522 2.4026 -0.0005 5 6 2.1403 3.5865 -0.0011 6 6 3.5422 3.5458 -0.0005 7 6 4.3289 4.7982 -0.0005 8 6 3.6637 6.0305 -0.0005 9 6 4.3528 7.2025 0.0001 10 6 5.7635 7.1942 0.0001 11 6 6.4829 8.3999 0.0001 12 1 7.4637 8.4435 -0.4501 13 6 5.9279 9.5478 0.5848 14 7 6.4131 10.7266 0.2983 15 14 4.4952 9.3911 1.7730 16 1 3.2174 9.4595 1.0196 17 1 4.5816 8.0901 2.4839 18 1 4.5475 10.4991 2.7605 19 6 6.4676 5.9077 -0.0055 20 6 7.8988 5.8610 -0.0116 21 7 9.0342 5.8238 -0.0189 22 6 5.7219 4.7340 -0.0001 23 6 4.1840 2.3069 -0.0053 24 7 3.4840 1.1907 0.0010 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.9500 -0.8401 -0.0004 29 1 0.3722 2.3998 -0.0005 30 1 1.6153 4.5303 -0.0011 31 1 2.5839 6.0503 -0.0001 32 1 3.8194 8.1416 -0.0004 33 1 7.1981 10.8038 -0.2662 34 1 6.2200 3.7758 -0.0004 35 1 5.2631 2.2626 -0.0097 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242069972.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:38 Heat of formation + Delta-G solvation = 61.928464 kcal Electronic energy + Delta-G solvation = -19715.429607 eV Core-core repulsion = 16676.953783 eV Total energy + Delta-G solvation = -3038.475824 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.14450 -39.60839 -37.24676 -36.69797 -35.79422 -33.73706 -32.65902 -31.81718 -30.19742 -27.61863 -26.05392 -25.04623 -23.42170 -23.18958 -22.26601 -20.24354 -19.08214 -18.64830 -17.60804 -16.71162 -16.31254 -16.07707 -15.82768 -15.54337 -15.25928 -15.05094 -14.80559 -14.48230 -14.42478 -14.12017 -14.06393 -13.62002 -13.48722 -13.11964 -13.08505 -12.86133 -12.65024 -12.20553 -12.10627 -11.75421 -11.44267 -11.23862 -10.86128 -10.59135 -10.23099 -9.79075 -9.63221 -9.42269 -8.30044 -6.64931 0.08055 0.32829 0.56297 1.11697 1.42969 1.61738 1.83190 1.91208 2.15450 2.28156 2.42491 2.60393 3.14195 3.43122 3.54982 3.79493 4.07008 4.13770 4.21454 4.33544 4.36856 4.53816 4.62598 4.75041 4.81534 4.85505 4.94464 5.00346 5.16334 5.25511 5.33422 5.36464 5.54052 5.68328 5.80745 5.89804 5.99548 6.18546 6.25438 6.40021 6.58970 6.72334 6.83026 7.36777 7.76322 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023692 B = 0.004363 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.534425 B = 6415.833196 C = 7427.938935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.733 5.733 3 C 0.365 3.635 4 C -0.224 4.224 5 C -0.046 4.046 6 C -0.121 4.121 7 C -0.162 4.162 8 C -0.025 4.025 9 C -0.245 4.245 10 C 0.123 3.877 11 C -0.510 4.510 12 H 0.044 0.956 13 C 0.013 3.987 14 N -0.809 5.809 15 Si 1.099 2.901 16 H -0.233 1.233 17 H -0.251 1.251 18 H -0.284 1.284 19 C -0.191 4.191 20 C 0.300 3.700 21 N -0.525 5.525 22 C -0.004 4.004 23 C 0.119 3.881 24 N -0.563 5.563 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.099 0.901 28 H 0.405 0.595 29 H 0.156 0.844 30 H 0.156 0.844 31 H 0.146 0.854 32 H 0.125 0.875 33 H 0.282 0.718 34 H 0.128 0.872 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.252 -14.368 1.047 23.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.366 5.366 3 C 0.129 3.871 4 C -0.249 4.249 5 C -0.071 4.071 6 C -0.126 4.126 7 C -0.164 4.164 8 C -0.043 4.043 9 C -0.264 4.264 10 C 0.118 3.882 11 C -0.537 4.537 12 H 0.062 0.938 13 C -0.205 4.205 14 N -0.430 5.430 15 Si 0.917 3.083 16 H -0.158 1.158 17 H -0.174 1.174 18 H -0.210 1.210 19 C -0.197 4.197 20 C -0.009 4.009 21 N -0.205 5.205 22 C -0.024 4.024 23 C -0.037 4.037 24 N -0.281 5.281 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.118 0.882 28 H 0.239 0.761 29 H 0.173 0.827 30 H 0.173 0.827 31 H 0.164 0.836 32 H 0.143 0.857 33 H 0.093 0.907 34 H 0.145 0.855 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -17.247 -14.239 1.869 22.443 hybrid contribution 1.737 0.143 -1.336 2.196 sum -15.509 -14.096 0.533 20.965 Atomic orbital electron populations 1.21777 0.77224 1.04365 1.01737 1.44308 1.06826 1.04485 1.81026 1.18782 0.88196 0.87851 0.92284 1.21301 1.01861 0.91006 1.10694 1.21437 0.92561 0.99328 0.93808 1.19464 0.94106 0.92896 1.06139 1.17918 0.91241 0.91966 1.15268 1.20858 1.00266 0.90610 0.92574 1.20902 0.92397 0.98991 1.14120 1.18738 0.92706 0.90164 0.86612 1.20746 1.03644 0.96337 1.33022 0.93793 1.28816 1.04121 0.89985 0.97559 1.70529 1.18716 1.26085 1.27656 0.83368 0.72874 0.77708 0.74358 1.15765 1.17449 1.21041 1.16993 0.82836 0.94912 1.24946 1.26067 0.93123 0.90828 0.90857 1.81018 1.13315 1.10559 1.15575 1.20917 0.93309 0.95316 0.92892 1.22616 0.99716 0.86455 0.94929 1.67099 1.07143 1.32227 1.21626 0.92209 0.92246 0.88240 0.76055 0.82682 0.82697 0.83619 0.85714 0.90673 0.85450 0.82775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.87 9.91 127.77 1.27 2.13 16 2 N -0.73 -12.66 5.87 -366.48 -2.15 -14.82 16 3 C 0.37 8.82 7.64 133.17 1.02 9.84 16 4 C -0.22 -4.75 9.26 22.23 0.21 -4.54 16 5 C -0.05 -1.08 9.46 22.45 0.21 -0.87 16 6 C -0.12 -3.51 5.90 -19.92 -0.12 -3.63 16 7 C -0.16 -5.37 5.88 -19.99 -0.12 -5.48 16 8 C -0.02 -0.79 9.31 22.18 0.21 -0.59 16 9 C -0.25 -9.51 7.20 22.43 0.16 -9.35 16 10 C 0.12 5.66 5.30 -19.86 -0.11 5.55 16 11 C -0.51 -26.24 8.90 23.29 0.21 -26.04 16 12 H 0.04 2.53 7.61 -2.91 -0.02 2.50 16 13 C 0.01 0.63 5.42 85.36 0.46 1.09 16 14 N -0.81 -41.40 13.64 21.88 0.30 -41.10 16 15 Si 1.10 41.77 24.90 68.60 1.71 43.48 16 16 H -0.23 -7.50 6.44 99.48 0.64 -6.86 16 17 H -0.25 -9.27 7.02 99.48 0.70 -8.57 16 18 H -0.28 -10.64 7.11 99.48 0.71 -9.94 16 19 C -0.19 -8.38 5.93 -19.64 -0.12 -8.50 16 20 C 0.30 14.24 14.34 88.33 1.27 15.50 16 21 N -0.53 -25.99 18.54 19.00 0.35 -25.64 16 22 C 0.00 -0.13 9.13 22.76 0.21 0.07 16 23 C 0.12 3.51 10.59 85.02 0.90 4.41 16 24 N -0.56 -16.32 10.39 -192.16 -2.00 -18.31 16 25 H 0.06 0.52 7.91 -2.39 -0.02 0.50 16 26 H 0.06 0.51 7.91 -2.39 -0.02 0.50 16 27 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 28 H 0.40 6.46 8.95 -92.70 -0.83 5.63 16 29 H 0.16 2.27 6.67 -2.91 -0.02 2.26 16 30 H 0.16 2.84 6.24 -2.91 -0.02 2.82 16 31 H 0.15 3.49 6.14 -2.91 -0.02 3.47 16 32 H 0.13 4.58 4.39 -2.91 -0.01 4.57 16 33 H 0.28 14.57 8.72 -92.71 -0.81 13.76 16 34 H 0.13 4.08 6.15 -2.91 -0.02 4.06 16 35 H 0.16 4.27 6.16 -2.91 -0.02 4.25 16 Total: -1.00 -61.49 303.09 4.09 -57.40 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.22 Total: 19.38 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: 5.66 Total: -20.39 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -3.50 Total: -99.87 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.71 Total: 43.48 kcal Total: -61.49 4.09 -57.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242069972.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.327 kcal (2) G-P(sol) polarization free energy of solvation -61.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds