Wall clock time and date at job start Tue Mar 31 2020 00:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38073 * 120.80185 * 2 1 4 4 C 1.39225 * 119.22611 * 180.29525 * 3 2 1 5 5 N 1.38865 * 119.56850 * 179.67275 * 4 3 2 6 6 N 1.32490 * 120.86191 * 359.70291 * 4 3 2 7 7 C 1.31756 * 121.75548 * 359.97438 * 6 4 3 8 8 C 1.39275 * 120.67762 * 0.02841 * 7 6 4 9 9 C 1.48255 * 120.45827 * 179.97438 * 8 7 6 10 10 C 1.39844 * 119.53876 * 130.00286 * 9 8 7 11 11 C 1.37694 * 121.17012 * 179.97438 * 10 9 8 12 12 C 1.39594 * 120.18381 * 0.24879 * 11 10 9 13 13 C 1.43201 * 120.44972 * 179.75230 * 12 11 10 14 14 N 7.64652 * 69.78736 * 178.85315 * 2 1 3 15 15 C 1.46550 * 119.09551 * 359.50835 * 12 11 10 16 16 C 1.40843 * 120.55099 * 180.22089 * 15 12 11 17 17 H 1.08007 * 120.00441 * 330.39975 * 16 15 12 18 18 C 1.40235 * 120.00087 * 150.40356 * 16 15 12 19 19 N 1.30658 * 120.00230 * 161.89131 * 18 16 15 20 20 Si 1.86800 * 119.99605 * 341.88880 * 18 16 15 21 21 H 1.48501 * 109.47255 * 95.39408 * 20 18 16 22 22 H 1.48497 * 109.47335 * 215.39533 * 20 18 16 23 23 H 1.48507 * 109.47300 * 335.39314 * 20 18 16 24 24 C 1.38647 * 119.53628 * 309.97195 * 9 8 7 25 25 H 1.09004 * 109.47011 * 270.27515 * 1 2 3 26 26 H 1.09004 * 109.47322 * 30.26910 * 1 2 3 27 27 H 1.08999 * 109.47311 * 150.27674 * 1 2 3 28 28 H 1.07994 * 120.38712 * 359.97383 * 3 2 1 29 29 H 0.96998 * 120.00027 * 180.02562 * 5 4 3 30 30 H 0.97002 * 119.99738 * 0.02638 * 5 4 3 31 31 H 1.07994 * 119.66219 * 180.02562 * 7 6 4 32 32 H 1.08008 * 119.41490 * 359.94607 * 10 9 8 33 33 H 1.08003 * 119.90356 * 179.97438 * 11 10 9 34 34 H 0.97006 * 119.99880 * 179.97438 * 19 18 16 35 35 H 1.07999 * 120.13523 * 0.04848 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2140 1.1860 0.0000 4 6 3.6057 1.1477 -0.0063 5 7 4.3239 2.3362 -0.0132 6 7 4.2538 -0.0079 -0.0063 7 6 3.6159 -1.1607 0.0001 8 6 2.2238 -1.2025 0.0065 9 6 1.5110 -2.5024 0.0131 10 6 0.4980 -2.7285 0.9502 11 6 -0.1861 -3.9229 0.9861 12 6 0.1277 -4.9389 0.0816 13 6 -0.5765 -6.1853 0.1172 14 7 -1.1350 -7.1742 0.1436 15 6 1.1839 -4.7105 -0.9083 16 6 1.5223 -5.7126 -1.8383 17 1 1.3998 -6.7539 -1.5788 18 6 2.0183 -5.3585 -3.1013 19 7 2.6561 -6.2409 -3.8237 20 14 1.7671 -3.6252 -3.7509 21 1 2.9682 -2.8051 -3.4507 22 1 1.5550 -3.6730 -5.2199 23 1 0.5784 -3.0195 -3.0987 24 6 1.8576 -3.4767 -0.9105 25 1 -0.3633 0.0049 1.0277 26 1 -0.3634 0.8876 -0.5180 27 1 -0.3634 -0.8924 -0.5095 28 1 1.6935 2.1322 -0.0004 29 1 5.2936 2.3168 -0.0180 30 1 3.8557 3.1857 -0.0133 31 1 4.1782 -2.0827 0.0002 32 1 0.2480 -1.9526 1.6588 33 1 -0.9646 -4.0758 1.7189 34 1 2.9988 -5.9960 -4.6975 35 1 2.6422 -3.2886 -1.6284 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242085557.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:04 Heat of formation + Delta-G solvation = 69.023790 kcal Electronic energy + Delta-G solvation = -20333.786389 eV Core-core repulsion = 17295.618242 eV Total energy + Delta-G solvation = -3038.168148 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.14420 -37.94102 -35.53681 -34.75438 -33.92008 -33.35506 -31.09057 -30.73135 -27.90766 -27.53165 -25.58599 -23.65587 -21.90274 -21.47780 -20.58848 -17.74685 -17.61773 -17.25537 -16.81076 -15.86072 -15.03063 -14.80915 -14.49756 -14.07981 -13.95617 -13.67886 -13.16276 -12.99140 -12.81725 -12.71861 -12.39369 -12.34653 -11.93441 -11.69604 -11.57799 -11.47838 -11.05651 -10.95510 -10.65407 -10.34228 -10.09373 -9.93959 -9.44413 -9.25587 -9.18268 -8.11276 -7.91543 -7.29408 -7.22892 -4.81668 1.33509 1.51485 2.09980 2.48715 2.97076 3.04502 3.15358 3.57788 3.74421 3.84930 3.89618 4.18452 4.41204 4.77393 5.03978 5.18163 5.22416 5.29447 5.33969 5.45297 5.70125 5.78331 5.82671 5.93245 6.11859 6.18606 6.27071 6.38791 6.54596 6.59518 6.80072 6.88154 7.01473 7.28841 7.32183 7.40425 7.49050 7.58012 7.74505 7.99944 8.28016 8.40203 8.41294 8.74088 9.70768 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017125 B = 0.006282 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.626487 B = 4456.090371 C = 5480.047318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.010 3.990 3 C -0.244 4.244 4 C 0.393 3.607 5 N -0.858 5.858 6 N -0.549 5.549 7 C 0.161 3.839 8 C -0.144 4.144 9 C 0.028 3.972 10 C -0.239 4.239 11 C -0.016 4.016 12 C -0.170 4.170 13 C 0.296 3.704 14 N -0.499 5.499 15 C 0.128 3.872 16 C -0.416 4.416 17 H 0.097 0.903 18 C 0.084 3.916 19 N -0.776 5.776 20 Si 0.908 3.092 21 H -0.262 1.262 22 H -0.285 1.285 23 H -0.236 1.236 24 C -0.220 4.220 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.126 0.874 29 H 0.401 0.599 30 H 0.404 0.596 31 H 0.159 0.841 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.293 0.707 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.297 16.902 3.854 17.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.003 3.997 3 C -0.268 4.268 4 C 0.157 3.843 5 N -0.402 5.402 6 N -0.267 5.267 7 C 0.004 3.996 8 C -0.149 4.149 9 C 0.026 3.974 10 C -0.258 4.258 11 C -0.037 4.037 12 C -0.176 4.176 13 C -0.014 4.014 14 N -0.178 5.178 15 C 0.123 3.877 16 C -0.442 4.442 17 H 0.115 0.885 18 C -0.140 4.140 19 N -0.397 5.397 20 Si 0.733 3.267 21 H -0.188 1.188 22 H -0.212 1.212 23 H -0.159 1.159 24 C -0.239 4.239 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.144 0.856 29 H 0.229 0.771 30 H 0.233 0.767 31 H 0.177 0.823 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.448 15.193 3.651 15.692 hybrid contribution -0.286 1.319 -0.494 1.437 sum 1.161 16.512 3.157 16.851 Atomic orbital electron populations 1.20933 0.90268 1.03416 1.02810 1.20101 0.96469 0.91345 0.91811 1.21048 0.92636 0.98754 1.14394 1.18339 0.88213 0.86762 0.91014 1.42095 1.09356 1.04302 1.84399 1.67116 1.40608 0.97396 1.21559 1.22635 0.90979 0.94533 0.91440 1.19713 0.94078 0.93495 1.07586 1.18168 0.94070 0.90248 0.94920 1.20144 1.03051 0.98310 1.04310 1.20491 0.96365 0.91932 0.94923 1.16894 1.02977 0.89848 1.07850 1.25714 0.91779 0.92501 0.91399 1.81039 1.13069 1.11880 1.11817 1.18356 0.87620 0.91261 0.90498 1.19661 1.31828 0.95984 0.96739 0.88461 1.26357 0.90602 1.00250 0.96755 1.69598 1.21677 1.37148 1.11255 0.86324 0.82046 0.80956 0.77366 1.18783 1.21230 1.15892 1.21016 1.04431 0.95256 1.03186 0.90457 0.91937 0.89663 0.85633 0.77066 0.76689 0.82340 0.87843 0.87721 0.89558 0.87250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 8.51 36.00 0.31 -1.16 16 2 C 0.01 0.15 5.89 -104.03 -0.61 -0.46 16 3 C -0.24 -3.16 9.62 -39.28 -0.38 -3.54 16 4 C 0.39 5.39 7.74 -155.04 -1.20 4.19 16 5 N -0.86 -8.17 9.07 31.13 0.28 -7.89 16 6 N -0.55 -8.81 10.38 -12.16 -0.13 -8.94 16 7 C 0.16 2.70 10.64 -17.20 -0.18 2.52 16 8 C -0.14 -2.44 5.45 -104.73 -0.57 -3.01 16 9 C 0.03 0.51 4.78 -105.03 -0.50 0.01 16 10 C -0.24 -4.16 7.91 -39.18 -0.31 -4.47 16 11 C -0.02 -0.30 9.74 -39.27 -0.38 -0.68 16 12 C -0.17 -3.67 5.95 -104.12 -0.62 -4.29 16 13 C 0.30 6.77 14.35 -22.47 -0.32 6.45 16 14 N -0.50 -11.92 18.54 41.84 0.78 -11.15 16 15 C 0.13 2.94 5.26 -104.68 -0.55 2.39 16 16 C -0.42 -10.43 9.03 -37.85 -0.34 -10.77 16 17 H 0.10 2.67 7.64 -52.48 -0.40 2.27 16 18 C 0.08 2.04 5.41 -17.30 -0.09 1.94 16 19 N -0.78 -19.16 13.92 55.56 0.77 -18.39 16 20 Si 0.91 19.05 24.53 -169.99 -4.17 14.88 16 21 H -0.26 -5.36 6.72 56.52 0.38 -4.98 16 22 H -0.29 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.24 -4.99 6.86 56.52 0.39 -4.60 16 24 C -0.22 -4.62 6.60 -38.55 -0.25 -4.88 16 25 H 0.08 0.85 7.57 -51.93 -0.39 0.46 16 26 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 27 H 0.08 1.21 6.59 -51.93 -0.34 0.87 16 28 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.40 3.45 8.95 -40.82 -0.37 3.09 16 30 H 0.40 2.64 8.82 -40.82 -0.36 2.28 16 31 H 0.16 2.53 8.03 -52.49 -0.42 2.11 16 32 H 0.10 1.57 6.90 -52.48 -0.36 1.21 16 33 H 0.10 1.67 8.06 -52.48 -0.42 1.24 16 34 H 0.29 6.49 8.29 -40.82 -0.34 6.15 16 35 H 0.11 2.32 4.72 -52.49 -0.25 2.07 16 LS Contribution 305.71 15.07 4.61 4.61 Total: -1.00 -27.63 305.71 -7.20 -34.83 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -3.33 Total: 7.80 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -6.01 Total: -15.76 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 1.70 Total: -46.36 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.17 Total: 14.88 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.63 -7.20 -34.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242085557.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.858 kcal (2) G-P(sol) polarization free energy of solvation -27.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds