Wall clock time and date at job start Tue Mar 31 2020 00:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38073 * 120.80185 * 2 1 4 4 C 1.39225 * 119.22611 * 180.29525 * 3 2 1 5 5 N 1.38865 * 119.56850 * 179.67275 * 4 3 2 6 6 N 1.32490 * 120.86191 * 359.70291 * 4 3 2 7 7 C 1.31756 * 121.75548 * 359.97438 * 6 4 3 8 8 C 1.39275 * 120.67762 * 0.02841 * 7 6 4 9 9 C 1.48255 * 120.45827 * 179.97438 * 8 7 6 10 10 C 1.39844 * 119.53876 * 130.00286 * 9 8 7 11 11 C 1.37694 * 121.17012 * 179.97438 * 10 9 8 12 12 C 1.39594 * 120.18381 * 0.24879 * 11 10 9 13 13 C 1.43201 * 120.44972 * 179.75230 * 12 11 10 14 14 N 7.64652 * 69.78736 * 178.85315 * 2 1 3 15 15 C 1.46550 * 119.09551 * 359.50835 * 12 11 10 16 16 C 1.40843 * 120.55099 * 180.22089 * 15 12 11 17 17 H 1.08007 * 120.00441 * 330.39975 * 16 15 12 18 18 C 1.40235 * 120.00087 * 150.40356 * 16 15 12 19 19 N 1.30658 * 120.00230 * 161.89131 * 18 16 15 20 20 Si 1.86800 * 119.99605 * 341.88880 * 18 16 15 21 21 H 1.48501 * 109.47255 * 95.39408 * 20 18 16 22 22 H 1.48497 * 109.47335 * 215.39533 * 20 18 16 23 23 H 1.48507 * 109.47300 * 335.39314 * 20 18 16 24 24 C 1.38647 * 119.53628 * 309.97195 * 9 8 7 25 25 H 1.09004 * 109.47011 * 270.27515 * 1 2 3 26 26 H 1.09004 * 109.47322 * 30.26910 * 1 2 3 27 27 H 1.08999 * 109.47311 * 150.27674 * 1 2 3 28 28 H 1.07994 * 120.38712 * 359.97383 * 3 2 1 29 29 H 0.96998 * 120.00027 * 180.02562 * 5 4 3 30 30 H 0.97002 * 119.99738 * 0.02638 * 5 4 3 31 31 H 1.07994 * 119.66219 * 180.02562 * 7 6 4 32 32 H 1.08008 * 119.41490 * 359.94607 * 10 9 8 33 33 H 1.08003 * 119.90356 * 179.97438 * 11 10 9 34 34 H 0.97006 * 119.99880 * 179.97438 * 19 18 16 35 35 H 1.07999 * 120.13523 * 0.04848 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2140 1.1860 0.0000 4 6 3.6057 1.1477 -0.0063 5 7 4.3239 2.3362 -0.0132 6 7 4.2538 -0.0079 -0.0063 7 6 3.6159 -1.1607 0.0001 8 6 2.2238 -1.2025 0.0065 9 6 1.5110 -2.5024 0.0131 10 6 0.4980 -2.7285 0.9502 11 6 -0.1861 -3.9229 0.9861 12 6 0.1277 -4.9389 0.0816 13 6 -0.5765 -6.1853 0.1172 14 7 -1.1350 -7.1742 0.1436 15 6 1.1839 -4.7105 -0.9083 16 6 1.5223 -5.7126 -1.8383 17 1 1.3998 -6.7539 -1.5788 18 6 2.0183 -5.3585 -3.1013 19 7 2.6561 -6.2409 -3.8237 20 14 1.7671 -3.6252 -3.7509 21 1 2.9682 -2.8051 -3.4507 22 1 1.5550 -3.6730 -5.2199 23 1 0.5784 -3.0195 -3.0987 24 6 1.8576 -3.4767 -0.9105 25 1 -0.3633 0.0049 1.0277 26 1 -0.3634 0.8876 -0.5180 27 1 -0.3634 -0.8924 -0.5095 28 1 1.6935 2.1322 -0.0004 29 1 5.2936 2.3168 -0.0180 30 1 3.8557 3.1857 -0.0133 31 1 4.1782 -2.0827 0.0002 32 1 0.2480 -1.9526 1.6588 33 1 -0.9646 -4.0758 1.7189 34 1 2.9988 -5.9960 -4.6975 35 1 2.6422 -3.2886 -1.6284 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242085557.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:03 Heat of formation + Delta-G solvation = 52.676693 kcal Electronic energy + Delta-G solvation = -20334.495253 eV Core-core repulsion = 17295.618242 eV Total energy + Delta-G solvation = -3038.877011 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.28736 -39.49970 -37.17302 -36.17818 -35.44091 -34.45872 -32.50282 -32.36638 -29.08145 -28.66527 -27.27646 -24.96604 -23.14737 -23.03067 -21.91163 -19.46558 -19.23329 -18.28345 -17.80458 -17.37457 -16.39012 -16.14621 -15.83408 -15.45976 -15.18966 -15.04780 -14.72166 -14.50853 -14.40216 -13.96440 -13.78011 -13.52694 -13.45145 -13.32769 -13.13777 -12.93735 -12.75333 -12.38087 -12.10563 -11.76656 -11.66788 -11.43076 -11.08942 -10.42943 -10.28410 -9.59639 -9.44969 -9.06281 -8.46672 -6.64986 -0.05439 0.41663 0.69601 0.87396 1.26529 1.37093 1.47860 2.01183 2.04908 2.27721 2.60689 2.70075 2.99827 3.49383 3.55850 3.72337 3.92966 4.04918 4.22991 4.32484 4.41741 4.66479 4.73020 4.75919 4.92301 4.93547 4.95591 5.07809 5.17363 5.25461 5.36786 5.60542 5.61920 5.77207 5.82278 5.97135 6.06377 6.23448 6.46762 6.53021 6.61607 6.63533 6.93018 7.41795 8.00418 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017125 B = 0.006282 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.626487 B = 4456.090371 C = 5480.047318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.011 3.989 3 C -0.237 4.237 4 C 0.390 3.610 5 N -0.839 5.839 6 N -0.573 5.573 7 C 0.150 3.850 8 C -0.174 4.174 9 C 0.042 3.958 10 C -0.212 4.212 11 C -0.009 4.009 12 C -0.186 4.186 13 C 0.302 3.698 14 N -0.526 5.526 15 C 0.123 3.877 16 C -0.460 4.460 17 H 0.053 0.947 18 C 0.054 3.946 19 N -0.823 5.823 20 Si 0.959 3.041 21 H -0.255 1.255 22 H -0.276 1.276 23 H -0.237 1.237 24 C -0.234 4.234 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.163 0.837 29 H 0.407 0.593 30 H 0.421 0.579 31 H 0.151 0.849 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.301 0.699 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.358 21.759 5.442 22.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.003 3.997 3 C -0.262 4.262 4 C 0.152 3.848 5 N -0.383 5.383 6 N -0.292 5.292 7 C -0.007 4.007 8 C -0.179 4.179 9 C 0.041 3.959 10 C -0.231 4.231 11 C -0.029 4.029 12 C -0.192 4.192 13 C -0.007 4.007 14 N -0.206 5.206 15 C 0.118 3.882 16 C -0.488 4.488 17 H 0.072 0.928 18 C -0.165 4.165 19 N -0.447 5.447 20 Si 0.780 3.220 21 H -0.180 1.180 22 H -0.203 1.203 23 H -0.160 1.160 24 C -0.253 4.253 25 H 0.116 0.884 26 H 0.106 0.894 27 H 0.083 0.917 28 H 0.181 0.819 29 H 0.236 0.764 30 H 0.253 0.747 31 H 0.168 0.832 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.112 0.888 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.516 20.088 5.252 20.769 hybrid contribution 0.014 0.086 -0.741 0.746 sum 0.530 20.174 4.511 20.679 Atomic orbital electron populations 1.21003 0.88523 1.03754 1.04195 1.20385 0.97709 0.90858 0.90731 1.21386 0.92270 0.99733 1.12797 1.18728 0.89172 0.87091 0.89830 1.42109 1.09803 1.03871 1.82545 1.67113 1.41183 0.97956 1.22979 1.22570 0.91207 0.94875 0.92005 1.19618 0.94140 0.93377 1.10808 1.18421 0.93559 0.90534 0.93417 1.20617 1.00893 0.98359 1.03214 1.20860 0.96749 0.90975 0.94323 1.17185 1.03076 0.90257 1.08692 1.26044 0.91312 0.92648 0.90686 1.81017 1.14251 1.12485 1.12808 1.18470 0.87858 0.91639 0.90223 1.19504 1.35970 0.94491 0.98789 0.92846 1.26959 0.89951 1.03190 0.96376 1.69627 1.23903 1.38895 1.12261 0.85572 0.81925 0.77316 0.77149 1.18033 1.20278 1.16023 1.20996 1.04657 0.95345 1.04312 0.88393 0.89357 0.91657 0.81950 0.76381 0.74656 0.83220 0.84091 0.84315 0.88806 0.87909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.32 8.51 71.23 0.61 -1.72 16 2 C 0.01 0.27 5.89 -19.48 -0.11 0.15 16 3 C -0.24 -4.98 9.62 22.47 0.22 -4.76 16 4 C 0.39 9.22 7.74 133.10 1.03 10.25 16 5 N -0.84 -12.50 9.07 -55.41 -0.50 -13.01 16 6 N -0.57 -17.18 10.38 -192.40 -2.00 -19.18 16 7 C 0.15 4.83 10.64 84.95 0.90 5.73 16 8 C -0.17 -5.44 5.45 -19.94 -0.11 -5.55 16 9 C 0.04 1.49 4.78 -20.13 -0.10 1.39 16 10 C -0.21 -6.56 7.91 22.53 0.18 -6.39 16 11 C -0.01 -0.29 9.74 22.47 0.22 -0.07 16 12 C -0.19 -8.02 5.95 -19.54 -0.12 -8.14 16 13 C 0.30 14.10 14.35 88.33 1.27 15.37 16 14 N -0.53 -25.79 18.54 19.00 0.35 -25.43 16 15 C 0.12 5.82 5.26 -19.90 -0.10 5.71 16 16 C -0.46 -24.69 9.03 23.39 0.21 -24.48 16 17 H 0.05 3.23 7.64 -2.91 -0.02 3.20 16 18 C 0.05 2.77 5.41 85.35 0.46 3.23 16 19 N -0.82 -43.36 13.92 21.87 0.30 -43.06 16 20 Si 0.96 40.15 24.53 68.60 1.68 41.83 16 21 H -0.26 -10.24 6.72 99.48 0.67 -9.58 16 22 H -0.28 -10.98 7.11 99.48 0.71 -10.28 16 23 H -0.24 -9.82 6.86 99.48 0.68 -9.14 16 24 C -0.23 -9.83 6.60 22.94 0.15 -9.68 16 25 H 0.10 1.53 7.57 -2.38 -0.02 1.51 16 26 H 0.09 1.30 8.10 -2.38 -0.02 1.28 16 27 H 0.06 1.57 6.59 -2.39 -0.02 1.56 16 28 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 29 H 0.41 5.57 8.95 -92.71 -0.83 4.74 16 30 H 0.42 3.44 8.82 -92.71 -0.82 2.62 16 31 H 0.15 4.85 8.03 -2.91 -0.02 4.82 16 32 H 0.14 3.42 6.90 -2.91 -0.02 3.40 16 33 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 34 H 0.30 14.10 8.29 -92.70 -0.77 13.33 16 35 H 0.10 4.43 4.72 -2.91 -0.01 4.42 16 Total: -1.00 -63.97 305.71 4.01 -59.96 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -0.54 Total: 17.83 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 4.70 Total: -18.95 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -1.84 Total: -100.67 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 1.68 Total: 41.83 kcal Total: -63.97 4.01 -59.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242085557.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.640 kcal (2) G-P(sol) polarization free energy of solvation -63.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds