Wall clock time and date at job start Tue Mar 31 2020 00:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38939 * 119.23313 * 2 1 4 4 C 1.36842 * 119.84926 * 179.97438 * 3 2 1 5 5 C 1.41150 * 118.40819 * 359.73021 * 4 3 2 6 6 C 1.40759 * 120.73159 * 180.28548 * 5 4 3 7 7 H 1.08003 * 119.99953 * 149.70262 * 6 5 4 8 8 C 1.40103 * 120.00106 * 329.70606 * 6 5 4 9 9 N 1.30755 * 119.99948 * 347.93234 * 8 6 5 10 10 Si 1.86801 * 120.00231 * 167.93752 * 8 6 5 11 11 H 1.48503 * 109.47153 * 89.99373 * 10 8 6 12 12 H 1.48500 * 109.47270 * 210.00119 * 10 8 6 13 13 H 1.48507 * 109.46860 * 329.99801 * 10 8 6 14 14 C 1.42073 * 118.53571 * 0.52871 * 5 4 3 15 15 C 1.47081 * 120.01284 * 179.73384 * 14 5 4 16 16 C 1.31760 * 118.11709 * 295.38560 * 15 14 5 17 17 C 1.50106 * 123.75956 * 180.41747 * 16 15 14 18 18 C 1.53007 * 110.13159 * 342.80514 * 17 16 15 19 19 F 1.39905 * 109.62600 * 169.48589 * 18 17 16 20 20 F 1.39894 * 109.63255 * 290.07465 * 18 17 16 21 21 C 1.53055 * 108.46053 * 49.76638 * 18 17 16 22 22 C 1.50095 * 118.11637 * 115.36712 * 15 14 5 23 23 N 1.31664 * 119.23217 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.47115 * 270.01809 * 1 2 3 25 25 H 1.09001 * 109.47330 * 30.01918 * 1 2 3 26 26 H 1.09002 * 109.47039 * 150.02282 * 1 2 3 27 27 H 1.08004 * 120.07609 * 359.95880 * 3 2 1 28 28 H 1.08001 * 120.79599 * 180.02562 * 4 3 2 29 29 H 0.97003 * 120.00530 * 179.97438 * 9 8 6 30 30 H 1.07999 * 118.12192 * 0.40157 * 16 15 14 31 31 H 1.08991 * 109.35968 * 103.01212 * 17 16 15 32 32 H 1.08994 * 109.35949 * 222.60646 * 17 16 15 33 33 H 1.08997 * 109.46911 * 172.14316 * 21 18 17 34 34 H 1.08995 * 109.62055 * 51.67034 * 21 18 17 35 35 H 1.08994 * 109.36255 * 283.05432 * 22 15 14 36 36 H 1.09008 * 109.36070 * 42.78276 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2124 0.0000 4 6 3.5538 1.2272 0.0005 5 6 4.2387 -0.0071 0.0069 6 6 5.6456 -0.0490 0.0138 7 1 6.1591 -0.8711 0.4902 8 6 6.3800 0.9758 -0.5973 9 7 5.7771 1.8398 -1.3717 10 14 8.2204 1.1077 -0.3060 11 1 8.9424 0.3156 -1.3339 12 1 8.6351 2.5308 -0.3960 13 1 8.5468 0.5815 1.0439 14 6 3.4766 -1.2061 0.0010 15 6 4.1569 -2.5102 0.0014 16 6 4.8906 -2.8281 -1.0458 17 6 5.6309 -4.1268 -1.1823 18 6 5.7639 -4.8033 0.1837 19 9 6.2359 -6.1097 0.0171 20 9 6.6526 -4.0769 0.9834 21 6 4.3841 -4.8345 0.8454 22 6 3.9757 -3.4021 1.1950 23 7 2.1499 -1.1490 0.0005 24 1 -0.3633 0.0003 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6342 2.1412 -0.0007 28 1 4.0968 2.1608 0.0010 29 1 6.2854 2.5496 -1.7946 30 1 4.9633 -2.1136 -1.8523 31 1 5.0857 -4.7840 -1.8595 32 1 6.6239 -3.9356 -1.5889 33 1 4.4306 -5.4343 1.7543 34 1 3.6574 -5.2648 0.1563 35 1 4.5958 -3.0393 2.0146 36 1 2.9293 -3.3890 1.5003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242232688.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:13 Heat of formation + Delta-G solvation = -82.609041 kcal Electronic energy + Delta-G solvation = -21932.063848 eV Core-core repulsion = 18436.631221 eV Total energy + Delta-G solvation = -3495.432627 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.113 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.64570 -46.65530 -38.82081 -36.89055 -34.27109 -31.97684 -30.87506 -30.64798 -28.92504 -27.65136 -24.33828 -23.24739 -22.41625 -20.90595 -20.59951 -17.90003 -17.35747 -17.13889 -16.13754 -15.72349 -15.58029 -14.92894 -14.31679 -13.97825 -13.78833 -13.53135 -13.27854 -13.02389 -12.81470 -12.69258 -12.40676 -12.28923 -11.97308 -11.88404 -11.82112 -11.57017 -11.44969 -11.22464 -11.09950 -10.96993 -10.64127 -10.50106 -9.95237 -9.76605 -9.40401 -8.54719 -8.10363 -7.91935 -7.38901 -6.87429 -4.50078 2.40988 2.75517 3.00743 3.05732 3.10244 3.16066 3.84188 4.03853 4.36398 4.53243 4.67612 4.71725 5.32770 5.40168 5.48781 5.51855 5.71330 5.86074 5.93265 5.94444 6.03819 6.05573 6.23628 6.30360 6.37469 6.40148 6.49198 6.58725 6.82166 6.96558 7.06512 7.15028 7.26555 7.62152 7.68455 7.89144 7.92024 8.39867 8.62441 8.69066 9.55902 10.03192 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.012379 B = 0.008564 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.279678 B = 3268.761499 C = 5169.229990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.011 4.011 3 C -0.145 4.145 4 C -0.126 4.126 5 C 0.084 3.916 6 C -0.438 4.438 7 H 0.086 0.914 8 C 0.075 3.925 9 N -0.793 5.793 10 Si 0.908 3.092 11 H -0.267 1.267 12 H -0.276 1.276 13 H -0.258 1.258 14 C 0.015 3.985 15 C -0.008 4.008 16 C -0.164 4.164 17 C -0.113 4.113 18 C 0.284 3.716 19 F -0.209 7.209 20 F -0.194 7.194 21 C -0.152 4.152 22 C -0.077 4.077 23 N -0.452 5.452 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.123 0.877 29 H 0.283 0.717 30 H 0.120 0.880 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.708 -6.612 1.313 6.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.152 4.152 3 C -0.165 4.165 4 C -0.152 4.152 5 C 0.080 3.920 6 C -0.467 4.467 7 H 0.104 0.896 8 C -0.144 4.144 9 N -0.418 5.418 10 Si 0.732 3.268 11 H -0.192 1.192 12 H -0.201 1.201 13 H -0.182 1.182 14 C -0.124 4.124 15 C -0.009 4.009 16 C -0.183 4.183 17 C -0.151 4.151 18 C 0.248 3.752 19 F -0.190 7.190 20 F -0.175 7.175 21 C -0.190 4.190 22 C -0.114 4.114 23 N -0.160 5.160 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.115 0.885 28 H 0.141 0.859 29 H 0.094 0.906 30 H 0.138 0.862 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.108 -7.164 1.175 7.343 hybrid contribution 1.555 1.112 0.016 1.912 sum 0.448 -6.052 1.190 6.184 Atomic orbital electron populations 1.20275 0.91635 1.00843 1.00333 1.20236 0.94775 0.88629 1.11599 1.21237 0.95443 0.97085 1.02765 1.21355 0.92548 0.98790 1.02498 1.18375 0.94088 0.90679 0.88857 1.19488 0.90923 1.06150 1.30187 0.89582 1.25967 1.01432 0.94059 0.92912 1.69739 1.38734 1.12506 1.20834 0.86286 0.81736 0.78303 0.80464 1.19205 1.20070 1.18180 1.19645 0.88325 0.91727 1.12701 1.18970 0.95679 0.92483 0.93736 1.21988 1.00004 0.96107 1.00227 1.21282 1.02881 0.96913 0.93994 1.21085 0.87255 0.74466 0.92351 1.92968 1.90456 1.39295 1.96310 1.93011 1.71103 1.77582 1.75786 1.22527 0.94091 1.00217 1.02201 1.20358 1.02777 0.90770 0.97505 1.66925 1.09604 1.29164 1.10301 0.93263 0.92989 0.92661 0.88499 0.85890 0.90581 0.86171 0.88682 0.89258 0.89876 0.88813 0.90249 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.15 36.00 0.37 -0.93 16 2 C -0.01 -0.25 6.79 -82.41 -0.56 -0.81 16 3 C -0.14 -3.30 9.64 -39.83 -0.38 -3.69 16 4 C -0.13 -3.15 8.70 -38.98 -0.34 -3.49 16 5 C 0.08 2.15 5.53 -106.37 -0.59 1.56 16 6 C -0.44 -10.94 7.75 -37.93 -0.29 -11.24 16 7 H 0.09 2.14 7.29 -52.48 -0.38 1.76 16 8 C 0.07 1.79 5.24 -17.31 -0.09 1.69 16 9 N -0.79 -19.49 11.06 55.56 0.61 -18.87 16 10 Si 0.91 18.23 29.58 -169.99 -5.03 13.20 16 11 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 12 H -0.28 -5.40 7.11 56.52 0.40 -4.99 16 13 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 14 C 0.02 0.36 6.02 -82.40 -0.50 -0.14 16 15 C -0.01 -0.16 4.61 -103.22 -0.48 -0.64 16 16 C -0.16 -3.16 8.40 -36.48 -0.31 -3.47 16 17 C -0.11 -1.76 5.60 -28.17 -0.16 -1.92 16 18 C 0.28 4.48 2.14 -26.70 -0.06 4.42 16 19 F -0.21 -3.21 17.08 2.25 0.04 -3.17 16 20 F -0.19 -3.51 16.31 2.25 0.04 -3.47 16 21 C -0.15 -2.19 5.57 -26.70 -0.15 -2.34 16 22 C -0.08 -1.33 5.44 -28.17 -0.15 -1.49 16 23 N -0.45 -10.69 10.20 -5.56 -0.06 -10.75 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.10 1.94 8.06 -52.48 -0.42 1.52 16 28 H 0.12 3.12 6.49 -52.49 -0.34 2.78 16 29 H 0.28 6.36 8.29 -40.82 -0.34 6.02 16 30 H 0.12 2.56 7.92 -52.49 -0.42 2.14 16 31 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.22 8.12 -51.93 -0.42 0.80 16 35 H 0.08 1.41 7.92 -51.93 -0.41 1.00 16 36 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 LS Contribution 308.16 15.07 4.64 4.64 Total: -1.00 -26.94 308.16 -7.92 -34.86 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.48 Total: 6.02 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -3.69 Total: -22.46 kcal Atomic # 7 Polarization: -30.18 SS G_CDS: 0.56 Total: -29.62 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 0.08 Total: -6.64 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.94 -7.92 -34.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242232688.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.751 kcal (2) G-P(sol) polarization free energy of solvation -26.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds