Wall clock time and date at job start Tue Mar 31 2020 00:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38939 * 119.23313 * 2 1 4 4 C 1.36842 * 119.84926 * 179.97438 * 3 2 1 5 5 C 1.41150 * 118.40819 * 359.73021 * 4 3 2 6 6 C 1.40759 * 120.73159 * 180.28548 * 5 4 3 7 7 H 1.08003 * 119.99953 * 149.70262 * 6 5 4 8 8 C 1.40103 * 120.00106 * 329.70606 * 6 5 4 9 9 N 1.30755 * 119.99948 * 347.93234 * 8 6 5 10 10 Si 1.86801 * 120.00231 * 167.93752 * 8 6 5 11 11 H 1.48503 * 109.47153 * 89.99373 * 10 8 6 12 12 H 1.48500 * 109.47270 * 210.00119 * 10 8 6 13 13 H 1.48507 * 109.46860 * 329.99801 * 10 8 6 14 14 C 1.42073 * 118.53571 * 0.52871 * 5 4 3 15 15 C 1.47081 * 120.01284 * 179.73384 * 14 5 4 16 16 C 1.31760 * 118.11709 * 295.38560 * 15 14 5 17 17 C 1.50106 * 123.75956 * 180.41747 * 16 15 14 18 18 C 1.53007 * 110.13159 * 342.80514 * 17 16 15 19 19 F 1.39905 * 109.62600 * 169.48589 * 18 17 16 20 20 F 1.39894 * 109.63255 * 290.07465 * 18 17 16 21 21 C 1.53055 * 108.46053 * 49.76638 * 18 17 16 22 22 C 1.50095 * 118.11637 * 115.36712 * 15 14 5 23 23 N 1.31664 * 119.23217 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.47115 * 270.01809 * 1 2 3 25 25 H 1.09001 * 109.47330 * 30.01918 * 1 2 3 26 26 H 1.09002 * 109.47039 * 150.02282 * 1 2 3 27 27 H 1.08004 * 120.07609 * 359.95880 * 3 2 1 28 28 H 1.08001 * 120.79599 * 180.02562 * 4 3 2 29 29 H 0.97003 * 120.00530 * 179.97438 * 9 8 6 30 30 H 1.07999 * 118.12192 * 0.40157 * 16 15 14 31 31 H 1.08991 * 109.35968 * 103.01212 * 17 16 15 32 32 H 1.08994 * 109.35949 * 222.60646 * 17 16 15 33 33 H 1.08997 * 109.46911 * 172.14316 * 21 18 17 34 34 H 1.08995 * 109.62055 * 51.67034 * 21 18 17 35 35 H 1.08994 * 109.36255 * 283.05432 * 22 15 14 36 36 H 1.09008 * 109.36070 * 42.78276 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2124 0.0000 4 6 3.5538 1.2272 0.0005 5 6 4.2387 -0.0071 0.0069 6 6 5.6456 -0.0490 0.0138 7 1 6.1591 -0.8711 0.4902 8 6 6.3800 0.9758 -0.5973 9 7 5.7771 1.8398 -1.3717 10 14 8.2204 1.1077 -0.3060 11 1 8.9424 0.3156 -1.3339 12 1 8.6351 2.5308 -0.3960 13 1 8.5468 0.5815 1.0439 14 6 3.4766 -1.2061 0.0010 15 6 4.1569 -2.5102 0.0014 16 6 4.8906 -2.8281 -1.0458 17 6 5.6309 -4.1268 -1.1823 18 6 5.7639 -4.8033 0.1837 19 9 6.2359 -6.1097 0.0171 20 9 6.6526 -4.0769 0.9834 21 6 4.3841 -4.8345 0.8454 22 6 3.9757 -3.4021 1.1950 23 7 2.1499 -1.1490 0.0005 24 1 -0.3633 0.0003 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6342 2.1412 -0.0007 28 1 4.0968 2.1608 0.0010 29 1 6.2854 2.5496 -1.7946 30 1 4.9633 -2.1136 -1.8523 31 1 5.0857 -4.7840 -1.8595 32 1 6.6239 -3.9356 -1.5889 33 1 4.4306 -5.4343 1.7543 34 1 3.6574 -5.2648 0.1563 35 1 4.5958 -3.0393 2.0146 36 1 2.9293 -3.3890 1.5003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242232688.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:13 Heat of formation + Delta-G solvation = -95.045952 kcal Electronic energy + Delta-G solvation = -21932.603153 eV Core-core repulsion = 18436.631221 eV Total energy + Delta-G solvation = -3495.971932 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.91408 -47.93409 -40.56239 -38.35505 -36.07304 -33.58152 -32.65726 -32.00223 -30.41538 -29.37483 -26.03113 -24.64053 -23.94605 -22.60742 -22.20276 -19.35492 -19.16268 -18.43409 -17.43595 -17.36345 -17.16735 -16.49155 -15.94908 -15.67206 -15.13051 -14.89167 -14.81370 -14.49348 -14.23552 -14.03867 -14.00681 -13.64521 -13.46934 -13.40935 -13.24122 -13.16957 -13.05299 -12.73990 -12.62651 -12.55906 -12.21847 -12.01920 -11.54313 -11.26747 -11.16413 -10.29853 -9.92568 -9.58971 -9.17397 -8.66589 -6.37918 0.64372 0.99365 1.35511 1.44867 1.47438 1.49433 2.16390 2.71679 2.79990 3.13386 3.37149 3.50256 3.62097 3.92463 4.11793 4.18021 4.37132 4.46164 4.52470 4.58403 4.63850 4.69865 4.80640 4.89415 4.91701 4.97005 5.01437 5.09179 5.11142 5.22761 5.32863 5.41667 5.59778 5.83097 5.94009 6.09231 6.22593 6.54027 6.77426 6.84118 7.73122 8.26145 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.012379 B = 0.008564 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.279678 B = 3268.761499 C = 5169.229990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.018 4.018 3 C -0.152 4.152 4 C -0.149 4.149 5 C 0.052 3.948 6 C -0.460 4.460 7 H 0.077 0.923 8 C 0.039 3.961 9 N -0.823 5.823 10 Si 0.971 3.029 11 H -0.262 1.262 12 H -0.265 1.265 13 H -0.261 1.261 14 C 0.007 3.993 15 C -0.031 4.031 16 C -0.153 4.153 17 C -0.110 4.110 18 C 0.284 3.716 19 F -0.203 7.203 20 F -0.211 7.211 21 C -0.143 4.143 22 C -0.070 4.070 23 N -0.465 5.465 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.124 0.876 28 H 0.110 0.890 29 H 0.290 0.710 30 H 0.091 0.909 31 H 0.126 0.874 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.069 0.931 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.058 -7.929 1.374 8.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.159 4.159 3 C -0.172 4.172 4 C -0.175 4.175 5 C 0.048 3.952 6 C -0.489 4.489 7 H 0.095 0.905 8 C -0.176 4.176 9 N -0.449 5.449 10 Si 0.792 3.208 11 H -0.186 1.186 12 H -0.189 1.189 13 H -0.185 1.185 14 C -0.131 4.131 15 C -0.032 4.032 16 C -0.173 4.173 17 C -0.147 4.147 18 C 0.248 3.752 19 F -0.184 7.184 20 F -0.192 7.192 21 C -0.181 4.181 22 C -0.107 4.107 23 N -0.174 5.174 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.142 0.858 28 H 0.128 0.872 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.144 0.856 32 H 0.114 0.886 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.087 0.913 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.474 -8.484 1.234 8.699 hybrid contribution 1.539 1.533 -0.044 2.173 sum 0.065 -6.951 1.191 7.052 Atomic orbital electron populations 1.20339 0.88045 1.02251 1.01958 1.21089 0.97270 0.88146 1.09348 1.21549 0.94839 0.98669 1.02136 1.21395 0.93716 0.98312 1.04048 1.18726 0.94849 0.91593 0.90004 1.19507 0.91113 1.06864 1.31453 0.90464 1.26667 1.05324 0.93408 0.92214 1.69781 1.40386 1.13182 1.21578 0.85350 0.76676 0.78735 0.80041 1.18627 1.18911 1.18483 1.20199 0.88722 0.92948 1.11264 1.19168 0.96492 0.92055 0.95501 1.21997 0.99347 0.97119 0.98831 1.21310 1.03082 0.95437 0.94903 1.21175 0.87552 0.74427 0.92086 1.92980 1.90446 1.38703 1.96268 1.92985 1.71813 1.78109 1.76271 1.22512 0.93451 0.98332 1.03794 1.20259 1.02634 0.92113 0.95675 1.67086 1.09499 1.29759 1.11072 0.91403 0.90760 0.92093 0.85837 0.87248 0.89939 0.89072 0.85602 0.88586 0.87457 0.86804 0.91281 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.26 10.15 71.23 0.72 -1.53 16 2 C -0.02 -0.78 6.79 42.75 0.29 -0.49 16 3 C -0.15 -6.93 9.64 22.11 0.21 -6.71 16 4 C -0.15 -7.67 8.70 22.66 0.20 -7.47 16 5 C 0.05 2.77 5.53 -21.00 -0.12 2.65 16 6 C -0.46 -23.85 7.75 23.34 0.18 -23.67 16 7 H 0.08 4.01 7.29 -2.91 -0.02 3.98 16 8 C 0.04 1.93 5.24 85.31 0.45 2.37 16 9 N -0.82 -41.65 11.06 21.85 0.24 -41.41 16 10 Si 0.97 37.89 29.58 68.60 2.03 39.92 16 11 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 12 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 13 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 14 C 0.01 0.37 6.02 42.27 0.25 0.62 16 15 C -0.03 -1.29 4.61 -18.47 -0.09 -1.38 16 16 C -0.15 -5.92 8.40 24.76 0.21 -5.71 16 17 C -0.11 -3.24 5.60 29.66 0.17 -3.07 16 18 C 0.28 8.31 2.14 30.62 0.07 8.37 16 19 F -0.20 -5.63 17.08 44.97 0.77 -4.86 16 20 F -0.21 -7.39 16.31 44.97 0.73 -6.66 16 21 C -0.14 -3.74 5.57 30.61 0.17 -3.57 16 22 C -0.07 -2.36 5.44 29.66 0.16 -2.19 16 23 N -0.47 -22.02 10.20 -171.51 -1.75 -23.77 16 24 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 26 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 28 H 0.11 5.81 6.49 -2.91 -0.02 5.79 16 29 H 0.29 13.30 8.29 -92.71 -0.77 12.53 16 30 H 0.09 4.03 7.92 -2.91 -0.02 4.00 16 31 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 32 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.11 2.55 8.12 -2.39 -0.02 2.53 16 35 H 0.07 2.45 7.92 -2.39 -0.02 2.44 16 36 H 0.09 2.91 8.14 -2.38 -0.02 2.89 16 Total: -1.00 -59.42 308.16 5.99 -53.43 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 1.09 Total: 25.13 kcal Atomic # 6 Polarization: -44.66 SS G_CDS: 2.88 Total: -41.78 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: -1.51 Total: -65.18 kcal Atomic # 9 Polarization: -13.02 SS G_CDS: 1.50 Total: -11.52 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.92 kcal Total: -59.42 5.99 -53.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242232688.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.611 kcal (2) G-P(sol) polarization free energy of solvation -59.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds