Wall clock time and date at job start Tue Mar 31 2020 00:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38142 * 120.40182 * 2 1 4 4 C 1.40073 * 118.38861 * 180.27599 * 3 2 1 5 5 C 1.47836 * 120.45618 * 179.72618 * 4 3 2 6 6 C 1.39960 * 119.45102 * 179.72302 * 5 4 3 7 7 C 1.36593 * 119.45840 * 179.76434 * 6 5 4 8 8 C 1.41321 * 118.41624 * 0.50414 * 7 6 5 9 9 C 1.40981 * 120.55316 * 179.76826 * 8 7 6 10 10 H 1.07998 * 120.00112 * 204.91265 * 9 8 7 11 11 C 1.40097 * 119.99719 * 24.90762 * 9 8 7 12 12 N 1.30746 * 120.00333 * 14.70379 * 11 9 8 13 13 Si 1.86799 * 119.99622 * 194.69887 * 11 9 8 14 14 H 1.48501 * 109.47207 * 60.00636 * 13 11 9 15 15 H 1.48507 * 109.46897 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47560 * 300.00155 * 13 11 9 17 17 C 1.41008 * 118.89577 * 359.73873 * 8 7 6 18 18 C 1.50704 * 119.79563 * 180.02562 * 17 8 7 19 19 N 1.31219 * 120.40631 * 0.02562 * 17 8 7 20 20 C 1.39927 * 119.09407 * 359.47655 * 4 3 2 21 21 N 1.31318 * 120.70178 * 0.53446 * 20 4 3 22 22 C 1.32949 * 121.77413 * 359.74134 * 21 20 4 23 23 C 1.43196 * 119.58467 * 179.97438 * 22 21 20 24 24 N 3.47624 * 80.42170 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47280 * 89.99832 * 1 2 3 26 26 H 1.09001 * 109.47296 * 210.00303 * 1 2 3 27 27 H 1.09000 * 109.47059 * 330.00322 * 1 2 3 28 28 H 1.08000 * 120.80567 * 359.97438 * 3 2 1 29 29 H 1.07997 * 120.26895 * 0.02562 * 6 5 4 30 30 H 1.08000 * 120.78982 * 180.22261 * 7 6 5 31 31 H 0.96997 * 120.00202 * 179.97438 * 12 11 9 32 32 H 1.08998 * 109.47285 * 269.98241 * 18 17 8 33 33 H 1.09000 * 109.47066 * 29.98605 * 18 17 8 34 34 H 1.09000 * 109.46697 * 149.98160 * 18 17 8 35 35 H 1.08000 * 119.64808 * 180.29628 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1915 0.0000 4 6 3.6059 1.1423 -0.0059 5 6 4.3995 2.3895 -0.0123 6 6 5.7972 2.3159 -0.0123 7 6 6.5306 3.4681 -0.0230 8 6 5.8432 4.7029 -0.0229 9 6 6.5553 5.9196 -0.0289 10 1 6.0977 6.8151 0.3650 11 6 7.8566 5.9670 -0.5457 12 7 8.3068 4.9797 -1.2750 13 14 8.9485 7.4410 -0.1927 14 1 9.1398 7.5754 1.2738 15 1 10.2669 7.2487 -0.8487 16 1 8.3069 8.6707 -0.7230 17 6 4.4331 4.6977 -0.0174 18 6 3.6795 6.0028 -0.0178 19 7 3.7732 3.5636 -0.0120 20 6 4.2429 -0.1036 -0.0004 21 7 3.5429 -1.2146 -0.0004 22 6 2.2134 -1.2043 -0.0004 23 6 1.4969 -2.4441 -0.0009 24 7 0.9285 -3.4278 -0.0015 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6859 2.1380 -0.0004 29 1 6.2917 1.3558 -0.0081 30 1 7.6101 3.4363 -0.0268 31 1 9.2077 5.0127 -1.6331 32 1 3.5015 6.3199 1.0097 33 1 4.2666 6.7612 -0.5356 34 1 2.7252 5.8710 -0.5279 35 1 5.3219 -0.1519 -0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242354774.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:36 Heat of formation + Delta-G solvation = 74.159531 kcal Electronic energy + Delta-G solvation = -19760.249132 eV Core-core repulsion = 16722.303687 eV Total energy + Delta-G solvation = -3037.945445 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.15315 -38.62985 -36.36694 -34.64618 -33.56601 -32.89482 -31.31506 -30.28766 -27.61417 -27.05278 -26.06651 -23.64809 -22.51475 -21.10735 -20.21632 -19.03140 -17.68104 -16.55331 -15.88841 -15.43594 -14.84524 -14.69679 -14.35574 -13.97223 -13.39757 -13.21499 -13.09005 -12.94379 -12.88002 -12.55660 -12.48853 -12.45224 -12.10943 -11.91512 -11.83614 -11.57897 -11.44952 -11.17405 -11.11120 -10.83928 -10.12529 -9.80362 -9.40158 -9.34760 -8.82632 -8.50978 -8.31589 -7.52151 -7.20259 -4.77878 0.68969 1.52969 2.31221 2.71011 2.75722 2.81667 2.82641 2.86102 3.25788 3.56274 3.82492 4.07588 4.40659 4.74655 4.89445 5.14843 5.27094 5.32623 5.36344 5.56763 5.60345 5.72504 5.93164 6.04735 6.13042 6.21070 6.34030 6.46238 6.46858 6.57533 6.65620 6.73067 6.85140 6.90168 7.06853 7.42000 7.52990 7.54272 7.65121 8.06484 8.08591 8.25694 8.37628 9.32331 9.63439 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.037122 B = 0.003687 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.098603 B = 7592.868668 C = 8266.154283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.074 4.074 3 C -0.086 4.086 4 C 0.017 3.983 5 C -0.021 4.021 6 C -0.115 4.115 7 C -0.145 4.145 8 C 0.075 3.925 9 C -0.413 4.413 10 H 0.093 0.907 11 C 0.068 3.932 12 N -0.765 5.765 13 Si 0.919 3.081 14 H -0.259 1.259 15 H -0.274 1.274 16 H -0.260 1.260 17 C 0.015 3.985 18 C -0.074 4.074 19 N -0.439 5.439 20 C 0.078 3.922 21 N -0.440 5.440 22 C 0.123 3.877 23 C 0.287 3.713 24 N -0.425 5.425 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.149 0.851 29 H 0.105 0.895 30 H 0.131 0.869 31 H 0.292 0.708 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.707 0.677 1.386 4.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.079 4.079 3 C -0.112 4.112 4 C 0.013 3.987 5 C -0.154 4.154 6 C -0.136 4.136 7 C -0.169 4.169 8 C 0.070 3.930 9 C -0.441 4.441 10 H 0.111 0.889 11 C -0.154 4.154 12 N -0.387 5.387 13 Si 0.742 3.258 14 H -0.183 1.183 15 H -0.198 1.198 16 H -0.184 1.184 17 C -0.133 4.133 18 C -0.131 4.131 19 N -0.147 5.147 20 C -0.085 4.085 21 N -0.148 5.148 22 C -0.014 4.014 23 C -0.029 4.029 24 N -0.103 5.103 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.167 0.833 29 H 0.123 0.877 30 H 0.149 0.851 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.836 -1.779 1.232 5.298 hybrid contribution 1.549 1.689 0.002 2.292 sum -3.287 -0.090 1.233 3.512 Atomic orbital electron populations 1.20813 0.90270 1.03216 1.02948 1.20603 0.96970 0.92287 0.98047 1.21493 0.93343 0.97638 0.98729 1.19909 0.93248 0.93472 0.92070 1.18427 0.89703 0.89421 1.17824 1.21308 0.93701 0.98340 1.00209 1.21367 1.00326 0.91140 1.04098 1.18487 0.91873 0.94011 0.88626 1.19844 0.97172 0.96205 1.30884 0.88909 1.26198 0.98498 0.98231 0.92499 1.69725 1.18053 1.30745 1.20176 0.86146 0.78586 0.80733 0.80312 1.18281 1.19846 1.18379 1.21008 0.90824 0.92201 1.09316 1.20290 0.98596 0.93636 1.00620 1.66674 1.41362 0.97664 1.09034 1.22768 1.00045 0.85973 0.99719 1.67337 1.05733 1.32122 1.09640 1.16101 0.89205 0.86240 1.09823 1.25104 0.92671 0.91939 0.93182 1.81179 1.09777 1.09833 1.09510 0.90440 0.91669 0.90369 0.83317 0.87691 0.85127 0.89704 0.93077 0.91374 0.92940 0.81829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 9.62 36.00 0.35 -0.93 16 2 C -0.07 -1.07 5.92 -104.14 -0.62 -1.69 16 3 C -0.09 -1.38 9.35 -38.93 -0.36 -1.75 16 4 C 0.02 0.30 5.90 -104.65 -0.62 -0.32 16 5 C -0.02 -0.44 6.74 -82.76 -0.56 -1.00 16 6 C -0.11 -2.37 9.39 -39.53 -0.37 -2.74 16 7 C -0.15 -3.27 8.73 -39.00 -0.34 -3.61 16 8 C 0.08 1.73 5.59 -106.64 -0.60 1.14 16 9 C -0.41 -9.10 8.16 -37.85 -0.31 -9.41 16 10 H 0.09 1.90 6.84 -52.49 -0.36 1.54 16 11 C 0.07 1.43 5.22 -17.32 -0.09 1.34 16 12 N -0.76 -16.71 10.83 55.56 0.60 -16.11 16 13 Si 0.92 15.60 29.58 -169.99 -5.03 10.57 16 14 H -0.26 -4.39 7.11 56.52 0.40 -3.99 16 15 H -0.27 -4.58 7.11 56.52 0.40 -4.18 16 16 H -0.26 -4.36 7.11 56.52 0.40 -3.96 16 17 C 0.01 0.33 6.86 -81.80 -0.56 -0.23 16 18 C -0.07 -1.34 9.58 36.01 0.34 -1.00 16 19 N -0.44 -9.49 9.37 -5.40 -0.05 -9.54 16 20 C 0.08 1.29 10.59 -17.14 -0.18 1.11 16 21 N -0.44 -7.42 10.26 -10.77 -0.11 -7.53 16 22 C 0.12 1.94 6.59 -84.94 -0.56 1.39 16 23 C 0.29 4.51 13.98 -22.47 -0.31 4.19 16 24 N -0.43 -7.02 18.54 41.84 0.78 -6.24 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.71 7.09 -51.93 -0.37 0.34 16 27 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 28 H 0.15 2.33 7.60 -52.49 -0.40 1.93 16 29 H 0.11 1.84 6.16 -52.49 -0.32 1.52 16 30 H 0.13 2.98 6.17 -52.49 -0.32 2.66 16 31 H 0.29 5.75 8.29 -40.82 -0.34 5.41 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.20 6.76 -51.93 -0.35 0.85 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.16 2.42 6.16 -52.49 -0.32 2.10 16 LS Contribution 309.70 15.07 4.67 4.67 Total: -1.00 -24.69 309.70 -7.20 -31.89 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -3.27 Total: 5.81 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -4.79 Total: -13.51 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 1.22 Total: -39.43 kcal Atomic # 14 Polarization: 15.60 SS G_CDS: -5.03 Total: 10.57 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -24.69 -7.20 -31.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242354774.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.053 kcal (2) G-P(sol) polarization free energy of solvation -24.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds