Wall clock time and date at job start Tue Mar 31 2020 00:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38142 * 120.40182 * 2 1 4 4 C 1.40073 * 118.38861 * 180.27599 * 3 2 1 5 5 C 1.47836 * 120.45618 * 179.72618 * 4 3 2 6 6 C 1.39960 * 119.45102 * 179.72302 * 5 4 3 7 7 C 1.36593 * 119.45840 * 179.76434 * 6 5 4 8 8 C 1.41321 * 118.41624 * 0.50414 * 7 6 5 9 9 C 1.40981 * 120.55316 * 179.76826 * 8 7 6 10 10 H 1.07998 * 120.00112 * 204.91265 * 9 8 7 11 11 C 1.40097 * 119.99719 * 24.90762 * 9 8 7 12 12 N 1.30746 * 120.00333 * 14.70379 * 11 9 8 13 13 Si 1.86799 * 119.99622 * 194.69887 * 11 9 8 14 14 H 1.48501 * 109.47207 * 60.00636 * 13 11 9 15 15 H 1.48507 * 109.46897 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47560 * 300.00155 * 13 11 9 17 17 C 1.41008 * 118.89577 * 359.73873 * 8 7 6 18 18 C 1.50704 * 119.79563 * 180.02562 * 17 8 7 19 19 N 1.31219 * 120.40631 * 0.02562 * 17 8 7 20 20 C 1.39927 * 119.09407 * 359.47655 * 4 3 2 21 21 N 1.31318 * 120.70178 * 0.53446 * 20 4 3 22 22 C 1.32949 * 121.77413 * 359.74134 * 21 20 4 23 23 C 1.43196 * 119.58467 * 179.97438 * 22 21 20 24 24 N 3.47624 * 80.42170 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47280 * 89.99832 * 1 2 3 26 26 H 1.09001 * 109.47296 * 210.00303 * 1 2 3 27 27 H 1.09000 * 109.47059 * 330.00322 * 1 2 3 28 28 H 1.08000 * 120.80567 * 359.97438 * 3 2 1 29 29 H 1.07997 * 120.26895 * 0.02562 * 6 5 4 30 30 H 1.08000 * 120.78982 * 180.22261 * 7 6 5 31 31 H 0.96997 * 120.00202 * 179.97438 * 12 11 9 32 32 H 1.08998 * 109.47285 * 269.98241 * 18 17 8 33 33 H 1.09000 * 109.47066 * 29.98605 * 18 17 8 34 34 H 1.09000 * 109.46697 * 149.98160 * 18 17 8 35 35 H 1.08000 * 119.64808 * 180.29628 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1915 0.0000 4 6 3.6059 1.1423 -0.0059 5 6 4.3995 2.3895 -0.0123 6 6 5.7972 2.3159 -0.0123 7 6 6.5306 3.4681 -0.0230 8 6 5.8432 4.7029 -0.0229 9 6 6.5553 5.9196 -0.0289 10 1 6.0977 6.8151 0.3650 11 6 7.8566 5.9670 -0.5457 12 7 8.3068 4.9797 -1.2750 13 14 8.9485 7.4410 -0.1927 14 1 9.1398 7.5754 1.2738 15 1 10.2669 7.2487 -0.8487 16 1 8.3069 8.6707 -0.7230 17 6 4.4331 4.6977 -0.0174 18 6 3.6795 6.0028 -0.0178 19 7 3.7732 3.5636 -0.0120 20 6 4.2429 -0.1036 -0.0004 21 7 3.5429 -1.2146 -0.0004 22 6 2.2134 -1.2043 -0.0004 23 6 1.4969 -2.4441 -0.0009 24 7 0.9285 -3.4278 -0.0015 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6859 2.1380 -0.0004 29 1 6.2917 1.3558 -0.0081 30 1 7.6101 3.4363 -0.0268 31 1 9.2077 5.0127 -1.6331 32 1 3.5015 6.3199 1.0097 33 1 4.2666 6.7612 -0.5356 34 1 2.7252 5.8710 -0.5279 35 1 5.3219 -0.1519 -0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242354774.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:35 Heat of formation + Delta-G solvation = 62.947249 kcal Electronic energy + Delta-G solvation = -19760.735334 eV Core-core repulsion = 16722.303687 eV Total energy + Delta-G solvation = -3038.431646 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.49442 -40.18823 -37.68019 -36.19568 -34.76417 -34.36939 -32.87574 -31.78487 -28.93765 -28.37081 -27.54020 -25.10285 -23.87299 -22.65083 -21.69814 -20.34569 -19.27374 -17.95083 -17.32657 -16.87953 -16.37254 -15.94901 -15.71106 -15.39833 -14.93553 -14.50503 -14.36061 -14.22098 -14.10877 -13.86395 -13.75574 -13.66975 -13.46671 -13.36192 -13.30296 -12.93244 -12.87959 -12.61107 -12.50670 -12.19856 -11.67430 -11.30446 -10.77823 -10.66689 -10.20506 -10.05623 -9.95033 -9.08900 -8.74798 -6.42070 -0.64588 0.25602 0.79044 1.11131 1.42070 1.42874 1.50599 1.54315 1.88509 2.15865 2.52476 2.63909 2.97090 3.54293 3.58977 3.70494 3.89104 3.97915 4.06080 4.32826 4.50783 4.58052 4.66543 4.71835 4.73473 4.96475 5.00466 5.04140 5.08995 5.13708 5.21255 5.25926 5.39605 5.51409 5.56482 5.81524 5.93786 6.00878 6.26352 6.45731 6.65611 6.72461 6.79089 7.68304 8.12571 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.037122 B = 0.003687 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.098603 B = 7592.868668 C = 8266.154283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.061 4.061 3 C -0.080 4.080 4 C -0.004 4.004 5 C -0.024 4.024 6 C -0.122 4.122 7 C -0.167 4.167 8 C 0.047 3.953 9 C -0.442 4.442 10 H 0.100 0.900 11 C 0.034 3.966 12 N -0.799 5.799 13 Si 0.987 3.013 14 H -0.258 1.258 15 H -0.270 1.270 16 H -0.254 1.254 17 C -0.007 4.007 18 C -0.067 4.067 19 N -0.449 5.449 20 C 0.085 3.915 21 N -0.454 5.454 22 C 0.126 3.874 23 C 0.297 3.703 24 N -0.434 5.434 25 H 0.094 0.906 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.154 0.846 29 H 0.130 0.870 30 H 0.120 0.880 31 H 0.297 0.703 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.980 0.444 1.588 5.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.066 4.066 3 C -0.106 4.106 4 C -0.008 4.008 5 C -0.157 4.157 6 C -0.142 4.142 7 C -0.192 4.192 8 C 0.042 3.958 9 C -0.470 4.470 10 H 0.118 0.882 11 C -0.185 4.185 12 N -0.423 5.423 13 Si 0.807 3.193 14 H -0.182 1.182 15 H -0.194 1.194 16 H -0.178 1.178 17 C -0.154 4.154 18 C -0.125 4.125 19 N -0.157 5.157 20 C -0.078 4.078 21 N -0.163 5.163 22 C -0.011 4.011 23 C -0.018 4.018 24 N -0.112 5.112 25 H 0.112 0.888 26 H 0.088 0.912 27 H 0.115 0.885 28 H 0.172 0.828 29 H 0.148 0.852 30 H 0.138 0.862 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -6.124 -2.011 1.434 6.603 hybrid contribution 1.748 1.488 -0.060 2.296 sum -4.376 -0.523 1.374 4.616 Atomic orbital electron populations 1.20923 0.87498 1.04401 1.04332 1.20852 0.98774 0.90904 0.96061 1.21606 0.92702 0.98506 0.97802 1.19894 0.94043 0.92743 0.94103 1.18870 0.90135 0.90268 1.16431 1.21577 0.94045 0.98910 0.99638 1.21417 1.00066 0.92099 1.05611 1.18825 0.92789 0.94649 0.89552 1.20069 0.98309 0.96290 1.32313 0.88221 1.26972 0.99212 1.00655 0.91694 1.69773 1.18680 1.32564 1.21242 0.85141 0.76773 0.77485 0.79912 1.18210 1.19434 1.17782 1.21535 0.90976 0.93575 1.09294 1.20278 0.98575 0.92008 1.01593 1.66753 1.41421 0.97921 1.09640 1.22907 1.00698 0.85419 0.98777 1.67369 1.06397 1.32149 1.10369 1.16315 0.89099 0.86775 1.08873 1.24980 0.92322 0.91681 0.92857 1.81203 1.10233 1.10051 1.09691 0.88794 0.91217 0.88490 0.82841 0.85235 0.86244 0.89189 0.91766 0.91343 0.91832 0.80558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 9.62 71.23 0.68 -1.44 16 2 C -0.06 -1.59 5.92 -19.55 -0.12 -1.71 16 3 C -0.08 -2.41 9.35 22.69 0.21 -2.20 16 4 C 0.00 -0.15 5.90 -19.88 -0.12 -0.26 16 5 C -0.02 -0.97 6.74 41.92 0.28 -0.69 16 6 C -0.12 -5.07 9.39 22.30 0.21 -4.86 16 7 C -0.17 -7.81 8.73 22.64 0.20 -7.62 16 8 C 0.05 2.22 5.59 -21.17 -0.12 2.10 16 9 C -0.44 -19.98 8.16 23.39 0.19 -19.79 16 10 H 0.10 4.16 6.84 -2.91 -0.02 4.14 16 11 C 0.03 1.44 5.22 85.31 0.45 1.89 16 12 N -0.80 -36.00 10.83 21.85 0.24 -35.76 16 13 Si 0.99 32.05 29.58 68.60 2.03 34.08 16 14 H -0.26 -8.26 7.11 99.48 0.71 -7.55 16 15 H -0.27 -8.47 7.11 99.48 0.71 -7.77 16 16 H -0.25 -7.93 7.11 99.48 0.71 -7.23 16 17 C -0.01 -0.29 6.86 43.33 0.30 0.00 16 18 C -0.07 -2.42 9.58 71.24 0.68 -1.74 16 19 N -0.45 -19.37 9.37 -170.99 -1.60 -20.98 16 20 C 0.08 2.68 10.59 85.18 0.90 3.59 16 21 N -0.45 -14.47 10.26 -187.99 -1.93 -16.39 16 22 C 0.13 3.68 6.59 40.55 0.27 3.95 16 23 C 0.30 8.62 13.98 88.33 1.24 9.86 16 24 N -0.43 -13.33 18.54 19.00 0.35 -12.98 16 25 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.07 1.27 7.09 -2.39 -0.02 1.26 16 27 H 0.10 1.49 8.09 -2.39 -0.02 1.47 16 28 H 0.15 4.49 7.60 -2.91 -0.02 4.47 16 29 H 0.13 4.54 6.16 -2.91 -0.02 4.52 16 30 H 0.12 5.73 6.17 -2.91 -0.02 5.71 16 31 H 0.30 12.04 8.29 -92.71 -0.77 11.27 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.07 2.42 6.76 -2.39 -0.02 2.41 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.18 4.99 6.16 -2.91 -0.02 4.98 16 Total: -1.00 -53.13 309.70 5.49 -47.64 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 1.15 Total: 23.32 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 5.26 Total: -18.92 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -2.94 Total: -86.11 kcal Atomic # 14 Polarization: 32.05 SS G_CDS: 2.03 Total: 34.08 kcal Total: -53.13 5.49 -47.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242354774.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.584 kcal (2) G-P(sol) polarization free energy of solvation -53.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds