Wall clock time and date at job start Tue Mar 31 2020 01:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35123 * 125.91591 * 2 1 4 4 C 1.34975 * 108.04896 * 180.02562 * 3 2 1 5 5 C 1.41059 * 107.85013 * 359.97438 * 4 3 2 6 6 C 1.47909 * 126.06768 * 180.02562 * 5 4 3 7 7 N 1.31581 * 119.45213 * 334.72868 * 6 5 4 8 8 C 1.33658 * 121.74642 * 179.76136 * 7 6 5 9 9 C 1.40480 * 120.97996 * 180.33004 * 8 7 6 10 10 C 1.36240 * 119.70875 * 180.24744 * 9 8 7 11 11 C 1.39167 * 121.75430 * 359.95769 * 10 9 8 12 12 C 1.36133 * 121.46209 * 359.97438 * 11 10 9 13 13 C 1.40781 * 119.47114 * 0.02852 * 12 11 10 14 14 C 1.40022 * 121.41267 * 180.02562 * 13 12 11 15 15 C 1.40373 * 117.96789 * 179.97438 * 14 13 12 16 16 C 1.40849 * 120.41107 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00321 * 152.35885 * 16 15 14 18 18 C 1.40083 * 119.99711 * 332.35467 * 16 15 14 19 19 N 1.30775 * 120.00078 * 345.20411 * 18 16 15 20 20 Si 1.86800 * 120.00010 * 165.20054 * 18 16 15 21 21 H 1.48501 * 109.47252 * 94.40532 * 20 18 16 22 22 H 1.48499 * 109.47229 * 214.40554 * 20 18 16 23 23 H 1.48499 * 109.46985 * 334.40600 * 20 18 16 24 24 N 1.31870 * 107.86209 * 0.02562 * 5 4 3 25 25 H 1.09004 * 109.46802 * 270.01891 * 1 2 3 26 26 H 1.08995 * 109.47081 * 30.01999 * 1 2 3 27 27 H 1.09004 * 109.47093 * 150.02806 * 1 2 3 28 28 H 1.08010 * 125.97372 * 0.04714 * 3 2 1 29 29 H 1.07996 * 126.07834 * 180.26765 * 4 3 2 30 30 H 1.08003 * 120.14227 * 0.20672 * 9 8 7 31 31 H 1.08000 * 119.12724 * 179.97438 * 10 9 8 32 32 H 1.07991 * 119.27185 * 180.02562 * 11 10 9 33 33 H 1.08005 * 120.26177 * 179.97438 * 12 11 10 34 34 H 1.08002 * 121.01771 * 359.95715 * 14 13 12 35 35 H 0.97002 * 119.99765 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2576 1.0943 0.0000 4 6 3.5423 0.6802 -0.0006 5 6 3.5419 -0.7304 -0.0003 6 6 4.7372 -1.6015 -0.0003 7 7 5.8703 -1.1453 -0.4895 8 6 6.9793 -1.8912 -0.5080 9 6 8.1823 -1.3854 -1.0281 10 6 9.2960 -2.1700 -1.0388 11 6 9.2802 -3.4709 -0.5446 12 6 8.1477 -4.0203 -0.0260 13 6 6.9638 -3.2594 0.0128 14 6 5.7763 -3.7837 0.5378 15 6 4.6386 -2.9614 0.5413 16 6 3.4170 -3.4367 1.0566 17 1 2.7000 -2.7440 1.4719 18 6 3.1319 -4.8080 1.0303 19 7 3.8451 -5.6099 0.2829 20 14 1.7331 -5.4911 2.0627 21 1 0.5004 -5.5670 1.2380 22 1 2.0909 -6.8495 2.5443 23 1 1.4958 -4.5999 3.2266 24 7 2.2866 -1.1345 -0.0002 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3633 -0.8903 -0.5134 28 1 1.9219 2.1209 0.0007 29 1 4.4154 1.3158 0.0034 30 1 8.2238 -0.3792 -1.4183 31 1 10.2157 -1.7718 -1.4412 32 1 10.1865 -4.0574 -0.5725 33 1 8.1572 -5.0320 0.3518 34 1 5.7367 -4.7901 0.9277 35 1 3.6479 -6.5595 0.2650 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242456956.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:51 Heat of formation + Delta-G solvation = 125.426009 kcal Electronic energy + Delta-G solvation = -20513.823977 eV Core-core repulsion = 17478.101613 eV Total energy + Delta-G solvation = -3035.722364 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.42445 -38.77859 -35.93372 -34.14769 -32.76122 -31.63881 -29.98835 -29.03823 -28.99503 -26.26885 -25.45711 -23.01985 -21.87662 -20.72156 -20.18790 -19.49929 -17.84708 -16.81931 -16.22062 -15.81398 -14.98193 -14.94298 -14.63322 -13.69069 -13.43347 -13.30653 -13.12550 -12.82237 -12.73119 -12.29995 -12.16440 -12.08620 -11.80470 -11.53870 -11.26666 -11.04658 -10.77959 -10.61542 -10.42291 -10.06884 -9.73082 -9.49216 -8.93842 -8.79532 -8.23937 -8.06766 -7.27691 -7.07318 -6.93690 -4.43919 1.49296 2.07458 2.49206 2.91603 2.97455 3.01795 3.04028 3.22960 3.65781 3.79871 4.15706 4.73854 4.84756 5.17268 5.25244 5.36029 5.58358 5.61861 5.71192 5.74149 5.89955 6.02104 6.24324 6.30046 6.35882 6.36885 6.64967 6.71331 6.90867 6.93536 7.05521 7.21558 7.33232 7.42548 7.47029 7.53683 7.77618 7.87219 7.95663 8.35413 8.42707 8.54614 8.61680 9.28790 9.94237 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.012805 B = 0.007707 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.037777 B = 3631.960075 C = 5701.294489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.392 5.392 3 C 0.030 3.970 4 C -0.242 4.242 5 C 0.148 3.852 6 C 0.143 3.857 7 N -0.447 5.447 8 C 0.022 3.978 9 C -0.055 4.055 10 C -0.183 4.183 11 C -0.116 4.116 12 C -0.131 4.131 13 C -0.043 4.043 14 C -0.174 4.174 15 C 0.079 3.921 16 C -0.398 4.398 17 H 0.097 0.903 18 C 0.070 3.930 19 N -0.772 5.772 20 Si 0.916 3.084 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.258 1.258 24 N -0.251 5.251 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.165 0.835 29 H 0.145 0.855 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.131 0.869 35 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.324 5.984 0.729 6.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.176 5.176 3 C -0.114 4.114 4 C -0.272 4.272 5 C -0.017 4.017 6 C -0.013 4.013 7 N -0.155 5.155 8 C -0.102 4.102 9 C -0.074 4.074 10 C -0.204 4.204 11 C -0.134 4.134 12 C -0.150 4.150 13 C -0.045 4.045 14 C -0.199 4.199 15 C 0.073 3.927 16 C -0.426 4.426 17 H 0.115 0.885 18 C -0.151 4.151 19 N -0.395 5.395 20 Si 0.739 3.261 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.182 1.182 24 N -0.074 5.074 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.182 0.818 29 H 0.163 0.837 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.149 0.851 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.152 5.596 0.282 6.974 hybrid contribution -0.173 -0.506 0.618 0.817 sum -4.325 5.090 0.899 6.740 Atomic orbital electron populations 1.21685 0.75239 1.03795 1.02707 1.48706 1.06265 1.04309 1.58308 1.22278 0.91325 0.93027 1.04759 1.21496 0.96439 0.94473 1.14767 1.20272 0.90724 0.91837 0.98856 1.19867 0.88640 0.91975 1.00834 1.67145 0.98192 1.35871 1.14287 1.19201 0.92186 0.91261 1.07529 1.20470 0.91140 0.98505 0.97267 1.20225 0.97790 0.95301 1.07072 1.20461 0.97384 0.95515 1.00083 1.20837 0.92754 0.98943 1.02506 1.19685 0.94364 0.93361 0.97126 1.21452 0.89753 1.01365 1.07357 1.19176 0.94058 0.89654 0.89835 1.19791 1.00989 0.92247 1.29585 0.88473 1.26074 0.97875 0.96974 0.94133 1.69794 1.35535 1.06030 1.28123 0.86158 0.80612 0.78625 0.80667 1.19197 1.19852 1.18179 1.78149 1.00954 1.04652 1.23691 0.91387 0.90240 0.89602 0.81755 0.83710 0.86948 0.87788 0.87954 0.87169 0.85122 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.24 11.46 59.85 0.69 1.92 16 2 N -0.39 -6.72 4.01 -68.20 -0.27 -6.99 16 3 C 0.03 0.47 11.46 -17.26 -0.20 0.27 16 4 C -0.24 -4.65 10.62 -39.67 -0.42 -5.07 16 5 C 0.15 3.44 6.63 -82.82 -0.55 2.89 16 6 C 0.14 3.68 6.91 -80.60 -0.56 3.12 16 7 N -0.45 -11.21 10.08 -4.83 -0.05 -11.26 16 8 C 0.02 0.53 6.74 -82.94 -0.56 -0.03 16 9 C -0.05 -1.15 9.98 -39.46 -0.39 -1.54 16 10 C -0.18 -3.43 9.90 -39.96 -0.40 -3.83 16 11 C -0.12 -2.19 9.91 -39.99 -0.40 -2.59 16 12 C -0.13 -2.80 9.80 -39.38 -0.39 -3.18 16 13 C -0.04 -1.05 5.87 -104.98 -0.62 -1.66 16 14 C -0.17 -4.53 8.52 -38.11 -0.32 -4.85 16 15 C 0.08 2.10 5.70 -104.69 -0.60 1.51 16 16 C -0.40 -10.26 7.91 -37.90 -0.30 -10.56 16 17 H 0.10 2.49 6.24 -52.49 -0.33 2.17 16 18 C 0.07 1.70 5.19 -17.31 -0.09 1.61 16 19 N -0.77 -19.18 11.01 55.56 0.61 -18.57 16 20 Si 0.92 18.15 29.59 -169.99 -5.03 13.12 16 21 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 22 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 23 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 24 N -0.25 -5.61 10.13 33.39 0.34 -5.27 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.17 1.76 8.06 -52.48 -0.42 1.34 16 29 H 0.15 2.60 8.06 -52.49 -0.42 2.18 16 30 H 0.11 2.11 8.06 -52.48 -0.42 1.69 16 31 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 33 H 0.11 2.15 8.06 -52.48 -0.42 1.73 16 34 H 0.13 3.42 6.36 -52.49 -0.33 3.09 16 35 H 0.29 6.41 8.29 -40.82 -0.34 6.07 16 LS Contribution 306.44 15.07 4.62 4.62 Total: -1.00 -30.57 306.44 -8.48 -39.05 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -3.60 Total: 7.31 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -5.10 Total: -22.00 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.63 Total: -42.09 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.57 -8.48 -39.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242456956.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.476 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds