Wall clock time and date at job start Tue Mar 31 2020 01:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35123 * 125.91591 * 2 1 4 4 C 1.34975 * 108.04896 * 180.02562 * 3 2 1 5 5 C 1.41059 * 107.85013 * 359.97438 * 4 3 2 6 6 C 1.47909 * 126.06768 * 180.02562 * 5 4 3 7 7 N 1.31581 * 119.45213 * 334.72868 * 6 5 4 8 8 C 1.33658 * 121.74642 * 179.76136 * 7 6 5 9 9 C 1.40480 * 120.97996 * 180.33004 * 8 7 6 10 10 C 1.36240 * 119.70875 * 180.24744 * 9 8 7 11 11 C 1.39167 * 121.75430 * 359.95769 * 10 9 8 12 12 C 1.36133 * 121.46209 * 359.97438 * 11 10 9 13 13 C 1.40781 * 119.47114 * 0.02852 * 12 11 10 14 14 C 1.40022 * 121.41267 * 180.02562 * 13 12 11 15 15 C 1.40373 * 117.96789 * 179.97438 * 14 13 12 16 16 C 1.40849 * 120.41107 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00321 * 152.35885 * 16 15 14 18 18 C 1.40083 * 119.99711 * 332.35467 * 16 15 14 19 19 N 1.30775 * 120.00078 * 345.20411 * 18 16 15 20 20 Si 1.86800 * 120.00010 * 165.20054 * 18 16 15 21 21 H 1.48501 * 109.47252 * 94.40532 * 20 18 16 22 22 H 1.48499 * 109.47229 * 214.40554 * 20 18 16 23 23 H 1.48499 * 109.46985 * 334.40600 * 20 18 16 24 24 N 1.31870 * 107.86209 * 0.02562 * 5 4 3 25 25 H 1.09004 * 109.46802 * 270.01891 * 1 2 3 26 26 H 1.08995 * 109.47081 * 30.01999 * 1 2 3 27 27 H 1.09004 * 109.47093 * 150.02806 * 1 2 3 28 28 H 1.08010 * 125.97372 * 0.04714 * 3 2 1 29 29 H 1.07996 * 126.07834 * 180.26765 * 4 3 2 30 30 H 1.08003 * 120.14227 * 0.20672 * 9 8 7 31 31 H 1.08000 * 119.12724 * 179.97438 * 10 9 8 32 32 H 1.07991 * 119.27185 * 180.02562 * 11 10 9 33 33 H 1.08005 * 120.26177 * 179.97438 * 12 11 10 34 34 H 1.08002 * 121.01771 * 359.95715 * 14 13 12 35 35 H 0.97002 * 119.99765 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2576 1.0943 0.0000 4 6 3.5423 0.6802 -0.0006 5 6 3.5419 -0.7304 -0.0003 6 6 4.7372 -1.6015 -0.0003 7 7 5.8703 -1.1453 -0.4895 8 6 6.9793 -1.8912 -0.5080 9 6 8.1823 -1.3854 -1.0281 10 6 9.2960 -2.1700 -1.0388 11 6 9.2802 -3.4709 -0.5446 12 6 8.1477 -4.0203 -0.0260 13 6 6.9638 -3.2594 0.0128 14 6 5.7763 -3.7837 0.5378 15 6 4.6386 -2.9614 0.5413 16 6 3.4170 -3.4367 1.0566 17 1 2.7000 -2.7440 1.4719 18 6 3.1319 -4.8080 1.0303 19 7 3.8451 -5.6099 0.2829 20 14 1.7331 -5.4911 2.0627 21 1 0.5004 -5.5670 1.2380 22 1 2.0909 -6.8495 2.5443 23 1 1.4958 -4.5999 3.2266 24 7 2.2866 -1.1345 -0.0002 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3633 -0.8903 -0.5134 28 1 1.9219 2.1209 0.0007 29 1 4.4154 1.3158 0.0034 30 1 8.2238 -0.3792 -1.4183 31 1 10.2157 -1.7718 -1.4412 32 1 10.1865 -4.0574 -0.5725 33 1 8.1572 -5.0320 0.3518 34 1 5.7367 -4.7901 0.9277 35 1 3.6479 -6.5595 0.2650 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242456956.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:51 Heat of formation + Delta-G solvation = 107.381339 kcal Electronic energy + Delta-G solvation = -20514.606452 eV Core-core repulsion = 17478.101613 eV Total energy + Delta-G solvation = -3036.504840 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.86078 -40.51949 -37.63088 -35.95592 -34.10054 -33.42488 -31.55076 -30.67947 -30.58927 -27.71466 -27.12220 -24.63462 -23.62904 -22.39584 -21.57995 -21.11477 -19.61866 -18.29304 -17.91063 -17.46277 -16.58327 -16.30524 -16.17758 -15.23845 -15.07722 -14.80793 -14.65495 -14.42521 -14.32165 -13.80365 -13.55212 -13.51110 -13.27172 -13.08550 -12.93338 -12.74107 -12.33652 -12.24759 -12.03469 -11.71787 -11.40151 -11.21532 -10.72724 -10.30159 -10.07639 -9.50648 -9.05406 -8.80067 -8.69730 -6.33656 -0.23781 0.31769 1.09398 1.30980 1.34118 1.47642 1.58894 1.80376 1.93311 2.14358 2.45937 2.95903 3.43742 3.76498 3.97041 4.03129 4.13426 4.29341 4.34006 4.51912 4.55666 4.63919 4.67111 4.72937 4.78256 4.91621 5.06989 5.10038 5.16833 5.26505 5.38239 5.57705 5.63482 5.75726 5.79859 5.93098 6.01999 6.26778 6.35453 6.51193 6.67140 6.75295 6.90538 7.43269 8.18458 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.012805 B = 0.007707 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.037777 B = 3631.960075 C = 5701.294489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.386 5.386 3 C 0.064 3.936 4 C -0.272 4.272 5 C 0.113 3.887 6 C 0.122 3.878 7 N -0.456 5.456 8 C -0.006 4.006 9 C -0.071 4.071 10 C -0.162 4.162 11 C -0.100 4.100 12 C -0.152 4.152 13 C -0.065 4.065 14 C -0.200 4.200 15 C 0.049 3.951 16 C -0.423 4.423 17 H 0.089 0.911 18 C 0.031 3.969 19 N -0.806 5.806 20 Si 0.986 3.014 21 H -0.260 1.260 22 H -0.260 1.260 23 H -0.258 1.258 24 N -0.296 5.296 25 H 0.086 0.914 26 H 0.126 0.874 27 H 0.079 0.921 28 H 0.226 0.774 29 H 0.148 0.852 30 H 0.132 0.868 31 H 0.152 0.848 32 H 0.148 0.852 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.181 7.467 0.438 8.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.169 5.169 3 C -0.081 4.081 4 C -0.302 4.302 5 C -0.051 4.051 6 C -0.035 4.035 7 N -0.165 5.165 8 C -0.129 4.129 9 C -0.090 4.090 10 C -0.182 4.182 11 C -0.118 4.118 12 C -0.171 4.171 13 C -0.068 4.068 14 C -0.226 4.226 15 C 0.043 3.957 16 C -0.452 4.452 17 H 0.107 0.893 18 C -0.186 4.186 19 N -0.431 5.431 20 Si 0.806 3.194 21 H -0.185 1.185 22 H -0.184 1.184 23 H -0.182 1.182 24 N -0.121 5.121 25 H 0.104 0.896 26 H 0.144 0.856 27 H 0.098 0.902 28 H 0.243 0.757 29 H 0.166 0.834 30 H 0.150 0.850 31 H 0.169 0.831 32 H 0.166 0.834 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.999 7.072 -0.018 8.124 hybrid contribution -0.080 -0.832 0.606 1.033 sum -4.080 6.239 0.588 7.478 Atomic orbital electron populations 1.22185 0.71935 1.05814 1.04538 1.49146 1.08073 1.03531 1.56169 1.23026 0.89616 0.94858 1.00623 1.21663 0.98549 0.92830 1.17133 1.20281 0.90374 0.93363 1.01055 1.20326 0.89965 0.92414 1.00747 1.67218 0.98475 1.36119 1.14678 1.19847 0.93429 0.91507 1.08105 1.20787 0.90531 0.99967 0.97709 1.20801 0.98558 0.94633 1.04229 1.20990 0.97852 0.95824 0.97093 1.21054 0.92688 0.99522 1.03853 1.20022 0.95164 0.94224 0.97388 1.21416 0.90854 1.01095 1.09234 1.19553 0.94753 0.90721 0.90686 1.19847 1.00965 0.93192 1.31156 0.89284 1.26920 1.00327 0.96602 0.94749 1.69845 1.37294 1.06583 1.29333 0.85136 0.77363 0.78181 0.78768 1.18475 1.18427 1.18218 1.78004 1.01365 1.07655 1.25121 0.89600 0.85610 0.90241 0.75747 0.83441 0.85036 0.83067 0.83417 0.86209 0.86493 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.92 11.46 127.77 1.46 3.38 16 2 N -0.39 -12.69 4.01 -369.69 -1.48 -14.17 16 3 C 0.06 1.86 11.46 83.44 0.96 2.81 16 4 C -0.27 -10.54 10.62 22.21 0.24 -10.31 16 5 C 0.11 5.49 6.63 42.39 0.28 5.77 16 6 C 0.12 6.69 6.91 43.96 0.30 6.99 16 7 N -0.46 -24.11 10.08 -169.19 -1.71 -25.81 16 8 C -0.01 -0.28 6.74 41.54 0.28 0.00 16 9 C -0.07 -2.89 9.98 22.35 0.22 -2.67 16 10 C -0.16 -5.48 9.90 22.03 0.22 -5.27 16 11 C -0.10 -3.45 9.91 22.00 0.22 -3.23 16 12 C -0.15 -6.48 9.80 22.40 0.22 -6.26 16 13 C -0.07 -3.37 5.87 -20.10 -0.12 -3.49 16 14 C -0.20 -11.24 8.52 23.22 0.20 -11.04 16 15 C 0.05 2.80 5.70 -19.91 -0.11 2.69 16 16 C -0.42 -23.42 7.91 23.36 0.18 -23.23 16 17 H 0.09 4.91 6.24 -2.91 -0.02 4.89 16 18 C 0.03 1.59 5.19 85.30 0.44 2.03 16 19 N -0.81 -42.45 11.01 21.85 0.24 -42.21 16 20 Si 0.99 38.54 29.59 68.60 2.03 40.57 16 21 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 22 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 23 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 24 N -0.30 -13.70 10.13 -48.28 -0.49 -14.19 16 25 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.23 3.58 8.06 -2.91 -0.02 3.56 16 29 H 0.15 5.41 8.06 -2.91 -0.02 5.38 16 30 H 0.13 4.74 8.06 -2.91 -0.02 4.71 16 31 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 32 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 33 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 34 H 0.12 6.67 6.36 -2.91 -0.02 6.65 16 35 H 0.29 13.80 8.29 -92.71 -0.77 13.03 16 Total: -1.00 -74.42 306.44 4.70 -69.72 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: 1.12 Total: 27.91 kcal Atomic # 6 Polarization: -46.82 SS G_CDS: 4.99 Total: -41.82 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -3.44 Total: -96.38 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Total: -74.42 4.70 -69.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242456956.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.103 kcal (2) G-P(sol) polarization free energy of solvation -74.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds